BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 2845dc16381b4104b3ff44a52794e4f3.SwissProt.fasta
           4 sequences; 1,078 total letters



Query= ACIAD2340

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P75826 Lysine exporter LysO [Escherichia coli (strain K12)]           100     4e-29
P44201 Putative lysine exporter [Haemophilus influenzae (strain A...  85.5    2e-24
Q0AM65 Na(+)/H(+) antiporter NhaA [Maricaulis maris (strain MCS10)]   42.4    1e-08
A1S7I6 Inner membrane-spanning protein YciB [Shewanella amazonens...  36.2    7e-07


>P75826 Lysine exporter LysO [Escherichia coli (strain K12)]
Length=299

 Score = 100 bits (249),  Expect = 4e-29
 Identities = 62/182 (34%), Positives = 103/182 (57%), Gaps = 3/182 (2%)

Query  75   LMVGATIGIFSLWQNLDFVFNSWYLLLVFIFLIGIELAFT--RFDRSWLSWKILIVPCAA  132
            +++G  IG+  L         S Y L++ +FL+GI+L        +  L+ + +IV    
Sbjct  115  VVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVV  174

Query  133  IIGSSLAAVFCAYLIQGLSLREIVALSQGYGWYSMSGILFTQLHSTELGGIALLTDLFRE  192
            ++ S +  +  A+++  L +   +A++ G+GWYS+SGIL T+     +G  A   DL RE
Sbjct  175  VVSSLIGGLINAFILD-LPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARE  233

Query  193  IFAILLMYCFGWRFPRSAISSAGATSMDATLAMVKQSCGTHYVPHAMVSGVILSLLAPIM  252
            + AI+L+     R   +A+   GATSMD TL +++++ G   VP A+V G ILSLL PI+
Sbjct  234  LIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPIL  293

Query  253  IS  254
            I+
Sbjct  294  IA  295


 Score = 20.8 bits (42),  Expect = 0.10
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (6%)

Query  96   SWYLLLVFIFLIGIELAF  113
            SW + L+ +F +GI LAF
Sbjct  34   SWMVYLI-LFFMGISLAF  50


 Score = 14.6 bits (26),  Expect = 9.4
 Identities = 6/21 (29%), Positives = 13/21 (62%), Gaps = 0/21 (0%)

Query  7    EFTLAIHQISQPELILPTALI  27
            +FTL + Q +    ++P A++
Sbjct  261  DFTLPVLQRTGGLDMVPAAIV  281


>P44201 Putative lysine exporter [Haemophilus influenzae (strain 
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=195

 Score = 85.5 bits (210),  Expect = 2e-24
 Identities = 53/185 (29%), Positives = 96/185 (52%), Gaps = 7/185 (4%)

Query  75   LMVGATIGIFSLWQNLDFVF----NSWYLLLVFIFLIGIELAFTRFDRS--WLSWKILIV  128
            L+    IGI   W   D++     ++ Y+L+  IF +GI+L           L+ + L++
Sbjct  4    LLSAVIIGIVLGWLCKDWLHFPNGSNLYVLITLIFFVGIQLRNNGISLKEVLLNKQGLMM  63

Query  129  PCAAIIGSSLAAVFCAYLIQGLSLREIVALSQGYGWYSMSGILFTQLHSTELGGIALLTD  188
                 + S +  V  A+ +  + + + +A S G+GWYS+S ++ T       G IA   D
Sbjct  64   GAIFTLSSLIGGVISAFFLS-MPITQGLAFSSGFGWYSLSSVVLTNAWGPMQGSIAFFND  122

Query  189  LFREIFAILLMYCFGWRFPRSAISSAGATSMDATLAMVKQSCGTHYVPHAMVSGVILSLL  248
            L REI ++ L+  F   +  +AI   GAT++D TL ++++S G    P A+  G++ +LL
Sbjct  123  LSREILSLFLIPLFMQHYRSTAIEITGATALDCTLPIIQKSGGIEVTPIAISFGMVTNLL  182

Query  249  APIMI  253
             P+++
Sbjct  183  PPLLL  187


>Q0AM65 Na(+)/H(+) antiporter NhaA [Maricaulis maris (strain MCS10)]
Length=403

 Score = 42.4 bits (98),  Expect = 1e-08
 Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 29/216 (13%)

Query  61   FLNAIKNISHAFFALMVGATIGIFSLWQNLDFVFNSWYLLLVFIFLIGIELAFTRFDRSW  120
            F ++ + I HA  A+ +G+    F L + L    N   L++VF FLIG+E+    F+   
Sbjct  45   FADSYEAIHHAPAAISIGS----FELAKPLILWINEG-LMIVFFFLIGLEIKREVFEGQL  99

Query  121  LSWKILIVPCAAIIGSSL--AAVFCAY------LIQGLSLREIVALSQGYGWYSMSGILF  172
             S K + +P  A +G  L  AA+F A+       ++G ++     +       +M G   
Sbjct  100  SSPKQIALPAFAALGGMLVPAAIFLAFNNGSEEYVRGWAVPAATDIVLALALLAMLGSRV  159

Query  173  TQLHSTELGGIALLTDLFREIFAILLMYCFGWRFPRSAISSAGATSMDATLAMVKQSCGT  232
                   L  +A+  D F  +  I L Y  G   P   +++ G  ++   L  ++ +  T
Sbjct  160  PIALKVFLTALAIFDD-FGTLVIIALAYSEGLSLPSLLMAALGTLAL-IVLNRLRVASLT  217

Query  233  HYV--------------PHAMVSGVILSLLAPIMIS  254
             YV               H+ ++GVI++   P+ +S
Sbjct  218  AYVLVGVFVWVSVLESGVHSTLAGVIIAWCIPMRVS  253


 Score = 15.4 bits (28),  Expect = 5.5
 Identities = 6/12 (50%), Positives = 8/12 (67%), Gaps = 0/12 (0%)

Query  162  YGWYSMSGILFT  173
            YG   +SG+ FT
Sbjct  339  YGAALLSGVGFT  350


>A1S7I6 Inner membrane-spanning protein YciB [Shewanella amazonensis 
(strain ATCC BAA-1098 / SB2B)]
Length=181

 Score = 36.2 bits (82),  Expect = 7e-07
 Identities = 31/117 (26%), Positives = 57/117 (49%), Gaps = 15/117 (13%)

Query  34   IASFITCLITYQVFDKNSIQGKVSLKLFLNAIKNISHAFFAL-----MVGATIGIFS-LW  87
            +ASF T  + +   D   I+ KV++   L AI  I+  F        M+G  + +   +W
Sbjct  58   VASFGTATLIFH--DDAFIKWKVTIVYALFAIALIAGQFLGKPILKSMLGQEMPVDDKIW  115

Query  88   QNLDFVFNSWYLLLVFIF--LIGIELAFTRFDRSWLSWKILIVPCAAIIGSSLAAVF  142
              L     +WY +L F+   LI I +AF+    +W+++K+  +  A ++ + L  V+
Sbjct  116  ARL-----TWYWVLFFVACGLINIYVAFSLSQETWVNFKVFGLTAATLVNTLLTVVY  167



Lambda      K        H        a         alpha
   0.333    0.143    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 212892


  Database: 2845dc16381b4104b3ff44a52794e4f3.SwissProt.fasta
    Posted date:  Jun 3, 2024  10:37 AM
  Number of letters in database: 1,078
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40