BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1fe01ac943b9a69325f2d6dd73bb4b02.SwissProt.fasta
11 sequences; 1,461 total letters
Query= ACIAD2356
Length=129
Score E
Sequences producing significant alignments: (Bits) Value
P24688 Type II secretion system protein I [Dickeya chrysanthemi] 52.0 2e-13
P15748 Type II secretion system protein I [Klebsiella pneumoniae] 50.8 5e-13
Q00516 Type II secretion system protein I [Pseudomonas aeruginosa... 50.1 1e-12
P31737 Type II secretion system protein I [Aeromonas hydrophila] 49.7 1e-12
A0A0H3HA88 Type II secretion system protein I [Klebsiella michiga... 48.5 3e-12
Q8VPC3 Type II secretion system protein I [Escherichia coli] 47.0 1e-11
P45775 Type II secretion system protein I [Vibrio cholerae seroty... 45.8 3e-11
P31588 Type II secretion system protein I [Pectobacterium carotov... 45.4 5e-11
P45760 Putative type II secretion system protein I [Escherichia c... 33.9 1e-06
P24689 Type II secretion system protein J [Dickeya chrysanthemi] 34.3 1e-06
P18774 Fimbrial protein [Pseudomonas aeruginosa] 33.5 2e-06
>P24688 Type II secretion system protein I [Dickeya chrysanthemi]
Length=125
Score = 52.0 bits (123), Expect = 2e-13
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query 1 MKAKGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAILRTKAQFVAMNEASLMQINH 60
MK +G TLLEVMVAL IFA A + + K Q +T A ++A N+ + M++
Sbjct 1 MKQQGMTLLEVMVALVIFALAGLTVLKTTAQQANGLGRLEEKTFALWIAENQQAAMRLEK 60
Query 61 EWLQGT-QSKQVTSQGETWQIDKRAESTISPNVQRIEIQV 99
+W Q +V G W + +T V+ I+++V
Sbjct 61 QWPQSQWVDGEVNFAGSLWFWRIQGIATADTRVRAIDVEV 100
>P15748 Type II secretion system protein I [Klebsiella pneumoniae]
Length=121
Score = 50.8 bits (120), Expect = 5e-13
Identities = 28/99 (28%), Positives = 55/99 (56%), Gaps = 1/99 (1%)
Query 2 KAKGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAILRTKAQFVAMNEASLMQINHE 61
K G TL+EVMVAL +FA A +A+ + +Q T+ +T A ++A N+ +++ +
Sbjct 3 KQSGMTLIEVMVALVVFALAGLAVMQATLQQTRQLGRMEEKTLASWLADNQLVQLRLENR 62
Query 62 WLQGTQSK-QVTSQGETWQIDKRAESTISPNVQRIEIQV 99
W + S+ + + G +W I + T P ++ ++++V
Sbjct 63 WPALSWSETTLQAAGVSWHIRWQGVETDLPQLRALDVEV 101
>Q00516 Type II secretion system protein I [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=129
Score = 50.1 bits (118), Expect = 1e-12
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query 2 KAKGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAILRTKAQFVAMNEASLMQINH- 60
+A+GFTLLEV+VALAIFA A ++ + Q+ + +T A ++A N + +Q+
Sbjct 3 RARGFTLLEVLVALAIFAMVAASVLSASARSLQNASRLEDKTLAMWIADNRLNELQLEQT 62
Query 61 EWLQGTQSKQVTSQGETWQIDKRAESTISPNVQRIEIQVS 100
G ++ G W+ + +ST +++R+ + V+
Sbjct 63 PPSSGRNQGELEFAGRRWEWRTQVDSTAEQDMRRVIVWVA 102
>P31737 Type II secretion system protein I [Aeromonas hydrophila]
Length=119
Score = 49.7 bits (117), Expect = 1e-12
Identities = 31/104 (30%), Positives = 53/104 (51%), Gaps = 9/104 (9%)
Query 1 MKAKGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAILRTKAQFVAMNEASLMQI-- 58
M A+G TLLEVMVALA+FA A +A+ K ++ + +T A +V N+ ++
Sbjct 1 MNARGMTLLEVMVALAVFAIAGLAVMKTASEHLSALNYLEEKTLATWVVENQLVQQKLEA 60
Query 59 ---NHEWLQGTQSKQVTSQGETWQIDKRAESTISPNVQRIEIQV 99
W++G + G+TW R +T N + ++++V
Sbjct 61 KWPGDSWVEGGEQ----MAGQTWYWRYRGVATADNNFKALDMEV 100
>A0A0H3HA88 Type II secretion system protein I [Klebsiella michiganensis
(strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318
/ NRRL B-199 / KCTC 1686 / BUCSAV 143 / CCM 1901)]
Length=121
Score = 48.5 bits (114), Expect = 3e-12
Identities = 30/99 (30%), Positives = 50/99 (51%), Gaps = 1/99 (1%)
Query 2 KAKGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAILRTKAQFVAMNEASLMQINHE 61
K KG TLLEV+VALAIF+ A + L + Q ++ + A ++A N+ + +N
Sbjct 3 KQKGMTLLEVLVALAIFSLAGLTLLQTTAQQARNAGMMKEKMLASWLADNQQVRLHLNKL 62
Query 62 WLQ-GTQSKQVTSQGETWQIDKRAESTISPNVQRIEIQV 99
W + VT GE W + + T ++ ++I+V
Sbjct 63 WPEKSATGALVTYAGEEWYLSWQGVDTEFSQLRALDIEV 101
>Q8VPC3 Type II secretion system protein I [Escherichia coli]
Length=123
Score = 47.0 bits (110), Expect = 1e-11
Identities = 35/114 (31%), Positives = 60/114 (53%), Gaps = 11/114 (10%)
Query 4 KGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAILRTKAQFVAMNEASLMQINHEWL 63
+GFTLLEVM+ALAIFA +A A+ ++ + +T A +VA N+ +L+ +L
Sbjct 3 RGFTLLEVMLALAIFALSATAVLQIASGALSNQHVLEEKTVAGWVAENQTALL-----YL 57
Query 64 QGTQSKQVTSQGET------WQIDKRAESTISPNVQRIEIQVSLFDTQQNKVEA 111
+ V QGE+ W ST + +Q ++I+VSL + + +++
Sbjct 58 MTRGQRAVRQQGESDMAGSRWYWRTTPLSTGNALLQAVDIEVSLHEDFSSVIQS 111
>P45775 Type II secretion system protein I [Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=117
Score = 45.8 bits (107), Expect = 3e-11
Identities = 29/79 (37%), Positives = 46/79 (58%), Gaps = 2/79 (3%)
Query 1 MKAK-GFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAILRTKAQFVAMNEASLMQIN 59
MK+K GFTLLEV+VALAIFATAA+++ + Q+ + + A V N+ + + +N
Sbjct 1 MKSKRGFTLLEVLVALAIFATAAISVIRSVSQHINTVNYLEEKMFAAMVVDNQMAQVMLN 60
Query 60 HEWLQGTQSKQVTSQGETW 78
+ L + + + G TW
Sbjct 61 PQSLAAREGSEQMA-GRTW 78
>P31588 Type II secretion system protein I [Pectobacterium carotovorum
subsp. carotovorum]
Length=121
Score = 45.4 bits (106), Expect = 5e-11
Identities = 26/99 (26%), Positives = 51/99 (52%), Gaps = 1/99 (1%)
Query 2 KAKGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAILRTKAQFVAMNEASLMQINHE 61
+ KG TL+EV+VAL++FA A +A+ + + S + +T A +VA N+ +++
Sbjct 3 RQKGMTLVEVLVALSVFALAGIAVLQTTARQASSLSRLEEKTFAGWVAENQQVQLRLEQR 62
Query 62 WLQGTQSKQVTS-QGETWQIDKRAESTISPNVQRIEIQV 99
W + + + T G W + T P + ++++V
Sbjct 63 WPEASWVRGETQFAGLRWHWRWQGVETGDPQTKALDVEV 101
>P45760 Putative type II secretion system protein I [Escherichia
coli (strain K12)]
Length=125
Score = 33.9 bits (76), Expect = 1e-06
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query 2 KAKGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAILR----TKAQFVAMNEASLMQ 57
K G TLLEV++A++IF A+ L M Q NAI R T A ++A N+
Sbjct 3 KQSGMTLLEVLLAMSIFTAVALTL----MSSMQGQRNAIERMRNETLALWIADNQLQSQD 58
Query 58 INHEWLQGTQSKQVTSQGETW 78
E + K++ + GE W
Sbjct 59 SFGEENTSSSGKELIN-GEEW 78
Score = 15.4 bits (28), Expect = 2.8
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
Query 3 AKGFTLLEVMVALAIFATAAVALTK 27
+K TLLE + + + + +LT+
Sbjct 87 SKDGTLLERTITVTLPSGQTTSLTR 111
>P24689 Type II secretion system protein J [Dickeya chrysanthemi]
Length=206
Score = 34.3 bits (77), Expect = 1e-06
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (4%)
Query 4 KGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAILRTKAQFVAMNEA-SLMQ 57
+GFTLLEVM+ALAIFA ++A +++ M A R +A+ + SLM+
Sbjct 6 RGFTLLEVMLALAIFAALSLAASQV-MNGVMRNDEASARKEARLAELQRGFSLME 59
>P18774 Fimbrial protein [Pseudomonas aeruginosa]
Length=154
Score = 33.5 bits (75), Expect = 2e-06
Identities = 33/111 (30%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query 1 MKA-KGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAILRTKAQFVAMNEASLMQIN 59
MKA KGFTL+E+M+ +AI A YT T + R ++ A+ A+ I
Sbjct 1 MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTART--QVTRAVSEVSALKTAAESAI- 57
Query 60 HEWLQGTQSKQVTSQGETWQIDKRAESTISPNVQRIEIQVSLFDTQQNKVE 110
L+G + + +T EST+ + +IQV+ D Q VE
Sbjct 58 ---LEGKEIVSSATPKDTQYDIGFTESTLLDGSGKSQIQVT--DNQDGTVE 103
Lambda K H a alpha
0.320 0.128 0.351 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 111969
Database: 1fe01ac943b9a69325f2d6dd73bb4b02.SwissProt.fasta
Posted date: May 13, 2024 11:10 AM
Number of letters in database: 1,461
Number of sequences in database: 11
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
