BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 34f80d03d55a167267245126e91c411c.SwissProt.fasta
28 sequences; 5,614 total letters
Query= ACIAD2358
Length=205
Score E
Sequences producing significant alignments: (Bits) Value
P67439 HTH-type transcriptional regulator Mb1846 [Mycobacterium b... 44.7 4e-09
P9WMC8 HTH-type transcriptional regulator MT1864 [Mycobacterium t... 44.7 4e-09
P9WMC9 HTH-type transcriptional regulator Rv1816 [Mycobacterium t... 44.7 4e-09
Q2YWD0 HTH-type transcriptional regulator SAB2452 [Staphylococcus... 41.6 4e-08
Q5HCX3 HTH-type transcriptional regulator SACOL2593 [Staphylococc... 41.2 5e-08
Q79ZX9 HTH-type transcriptional regulator MW2498 [Staphylococcus ... 41.2 5e-08
Q99R60 HTH-type transcriptional regulator SAV2578 [Staphylococcus... 41.2 5e-08
Q6GDM3 HTH-type transcriptional regulator SAR2658 [Staphylococcus... 41.2 5e-08
Q2FV42 HTH-type transcriptional regulator SAOUHSC_02897 [Staphylo... 41.2 5e-08
P32398 Uncharacterized HTH-type transcriptional regulator YhgD [B... 41.2 5e-08
Q6GDD9 Biofilm operon icaADBC HTH-type negative transcriptional r... 39.7 2e-07
Q7A352 Biofilm operon icaADBC HTH-type negative transcriptional r... 39.7 2e-07
Q7A2K5 Biofilm operon icaADBC HTH-type negative transcriptional r... 39.7 2e-07
A6QKF4 Biofilm operon icaADBC HTH-type negative transcriptional r... 39.7 2e-07
Q9RQQ0 Biofilm operon icaADBC HTH-type negative transcriptional r... 39.7 2e-07
A1JHW9 Nucleoid occlusion factor SlmA [Yersinia enterocolitica se... 39.3 3e-07
A8GLE8 Nucleoid occlusion factor SlmA [Serratia proteamaculans (s... 38.9 3e-07
A7ML90 HTH-type transcriptional repressor FabR [Cronobacter sakaz... 38.9 4e-07
P44923 Uncharacterized HTH-type transcriptional regulator HI_0893... 38.5 4e-07
Q9KVD2 Nucleoid occlusion factor SlmA [Vibrio cholerae serotype O... 38.5 5e-07
Q8G2M8 HTH-type transcriptional repressor BepR [Brucella suis bio... 37.7 9e-07
P0ACU5 HTH-type transcriptional repressor FabR [Escherichia coli ... 37.7 1e-06
P94423 Uncharacterized HTH-type transcriptional regulator YcnC [B... 37.4 2e-06
Q5HKQ1 Biofilm operon icaADBC HTH-type negative transcriptional r... 36.6 2e-06
Q8GLC6 Biofilm operon icaADBC HTH-type negative transcriptional r... 36.6 2e-06
P9WMB9 HTH-type transcriptional repressor KstR2 [Mycobacterium tu... 35.8 4e-06
P0A0N4 HTH-type transcriptional regulator QacR [Staphylococcus au... 35.4 5e-06
Q9RAJ1 HTH-type transcriptional repressor DhaR [Mycobacterium sp.... 35.4 5e-06
>P67439 HTH-type transcriptional regulator Mb1846 [Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97)]
Length=234
Score = 44.7 bits (104), Expect = 4e-09
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 0/52 (0%)
Query 13 EALIFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIV 64
EA I E+ + LL++G AG++L A+A L + +Y++ S+DEL LL+V
Sbjct 18 EAKIVELGRRQLLDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDELLTLLLV 69
Score = 20.0 bits (40), Expect = 0.67
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 10/34 (29%)
Query 161 LTHGAAAI----------LNSSFYQRYLGSRDTL 184
L HGAA + + SS RY+ SRD L
Sbjct 30 LDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDEL 63
>P9WMC8 HTH-type transcriptional regulator MT1864 [Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh)]
Length=234
Score = 44.7 bits (104), Expect = 4e-09
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 0/52 (0%)
Query 13 EALIFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIV 64
EA I E+ + LL++G AG++L A+A L + +Y++ S+DEL LL+V
Sbjct 18 EAKIVELGRRQLLDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDELLTLLLV 69
Score = 20.0 bits (40), Expect = 0.67
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 10/34 (29%)
Query 161 LTHGAAAI----------LNSSFYQRYLGSRDTL 184
L HGAA + + SS RY+ SRD L
Sbjct 30 LDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDEL 63
>P9WMC9 HTH-type transcriptional regulator Rv1816 [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=234
Score = 44.7 bits (104), Expect = 4e-09
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 0/52 (0%)
Query 13 EALIFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIV 64
EA I E+ + LL++G AG++L A+A L + +Y++ S+DEL LL+V
Sbjct 18 EAKIVELGRRQLLDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDELLTLLLV 69
Score = 20.0 bits (40), Expect = 0.67
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 10/34 (29%)
Query 161 LTHGAAAI----------LNSSFYQRYLGSRDTL 184
L HGAA + + SS RY+ SRD L
Sbjct 30 LDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDEL 63
>Q2YWD0 HTH-type transcriptional regulator SAB2452 [Staphylococcus
aureus (strain bovine RF122 / ET3-1)]
Length=185
Score = 41.6 bits (96), Expect = 4e-08
Identities = 19/51 (37%), Positives = 32/51 (63%), Gaps = 0/51 (0%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRN 66
I E+A +L E G ++++ +A EL + GTLY+HF+ K +L +I R+
Sbjct 12 IEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCFYVIQRD 62
>Q5HCX3 HTH-type transcriptional regulator SACOL2593 [Staphylococcus
aureus (strain COL)]
Length=185
Score = 41.2 bits (95), Expect = 5e-08
Identities = 19/51 (37%), Positives = 32/51 (63%), Gaps = 0/51 (0%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRN 66
I E+A +L E G ++++ +A EL + GTLY+HF+ K +L +I R+
Sbjct 12 IEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRD 62
>Q79ZX9 HTH-type transcriptional regulator MW2498 [Staphylococcus
aureus (strain MW2)]
Length=185
Score = 41.2 bits (95), Expect = 5e-08
Identities = 19/51 (37%), Positives = 32/51 (63%), Gaps = 0/51 (0%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRN 66
I E+A +L E G ++++ +A EL + GTLY+HF+ K +L +I R+
Sbjct 12 IEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRD 62
>Q99R60 HTH-type transcriptional regulator SAV2578 [Staphylococcus
aureus (strain Mu50 / ATCC 700699)]
Length=185
Score = 41.2 bits (95), Expect = 5e-08
Identities = 19/51 (37%), Positives = 32/51 (63%), Gaps = 0/51 (0%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRN 66
I E+A +L E G ++++ +A EL + GTLY+HF+ K +L +I R+
Sbjct 12 IEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRD 62
>Q6GDM3 HTH-type transcriptional regulator SAR2658 [Staphylococcus
aureus (strain MRSA252)]
Length=185
Score = 41.2 bits (95), Expect = 5e-08
Identities = 19/51 (37%), Positives = 32/51 (63%), Gaps = 0/51 (0%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRN 66
I E+A +L E G ++++ +A EL + GTLY+HF+ K +L +I R+
Sbjct 12 IEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRD 62
Score = 18.5 bits (36), Expect = 2.0
Identities = 14/56 (25%), Positives = 25/56 (45%), Gaps = 6/56 (11%)
Query 49 YKHFQSKDELY------MLLIVRNERMLLEMIQDKQKSFPEHLAFFMLHHLHHPER 98
Y F+S D++Y MLL + R+ I+ + S + + + +L ER
Sbjct 128 YDLFKSDDDIYTKFKTDMLLQALSTRVFDFQIEHRNISIEAYRNYLLNIYLDEVER 183
>Q2FV42 HTH-type transcriptional regulator SAOUHSC_02897 [Staphylococcus
aureus (strain NCTC 8325 / PS 47)]
Length=185
Score = 41.2 bits (95), Expect = 5e-08
Identities = 19/51 (37%), Positives = 32/51 (63%), Gaps = 0/51 (0%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRN 66
I E+A +L E G ++++ +A EL + GTLY+HF+ K +L +I R+
Sbjct 12 IEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRD 62
>P32398 Uncharacterized HTH-type transcriptional regulator YhgD
[Bacillus subtilis (strain 168)]
Length=191
Score = 41.2 bits (95), Expect = 5e-08
Identities = 34/128 (27%), Positives = 58/128 (45%), Gaps = 11/128 (9%)
Query 12 REALIFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRNERMLL 71
R+ LI E A + + G T+D +A ++ KGT+Y F++K+EL+ + +L
Sbjct 5 RKKLILEAATKSFTQFGYKATTMDLVAKLANVGKGTIYTFFKNKEELFDEIFT---TLLK 61
Query 72 EMIQDKQKSFPEHLAFFMLHHLHHPERTVMFHQIEERLSTTGQGIYDLFQELYQVRKQRL 131
EM Q ++ L F H +F +E R T Q +FQE ++ +
Sbjct 62 EMKQKADEAMEPSLPF------HENVHRALFAILEFR--KTHQLTIKIFQENAEIGTMAV 113
Query 132 RIIINMTE 139
+ +I E
Sbjct 114 QEVIQKME 121
>Q6GDD9 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain MRSA252)]
Length=186
Score = 39.7 bits (91), Expect = 2e-07
Identities = 43/168 (26%), Positives = 65/168 (39%), Gaps = 10/168 (6%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELY---MLLIVRNERMLLE 72
I + A L E G G TLD +A +++ K +LY HF SK +Y + ++
Sbjct 5 IIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIM 64
Query 73 MIQDKQKSFPEHLAFFMLHHLHHPERTV--MFHQIEERLSTTGQGIYDLFQELYQVRKQR 130
M Q+K + L F+ + E M+ Q+ IY Q+L Q +
Sbjct 65 MNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKE 124
Query 131 LRII-----INMTEIYLQEIQSTMTVRDYLAAIWSLTHGAAAILNSSF 173
+ I MT+ Q + YL A +S GA S F
Sbjct 125 IAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQF 172
>Q7A352 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain N315)]
Length=186
Score = 39.7 bits (91), Expect = 2e-07
Identities = 43/168 (26%), Positives = 65/168 (39%), Gaps = 10/168 (6%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELY---MLLIVRNERMLLE 72
I + A L E G G TLD +A +++ K +LY HF SK +Y + ++
Sbjct 5 IIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIM 64
Query 73 MIQDKQKSFPEHLAFFMLHHLHHPERTV--MFHQIEERLSTTGQGIYDLFQELYQVRKQR 130
M Q+K + L F+ + E M+ Q+ IY Q+L Q +
Sbjct 65 MNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKE 124
Query 131 LRII-----INMTEIYLQEIQSTMTVRDYLAAIWSLTHGAAAILNSSF 173
+ I MT+ Q + YL A +S GA S F
Sbjct 125 IAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQF 172
>Q7A2K5 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain Mu50 / ATCC
700699)]
Length=186
Score = 39.7 bits (91), Expect = 2e-07
Identities = 43/168 (26%), Positives = 65/168 (39%), Gaps = 10/168 (6%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELY---MLLIVRNERMLLE 72
I + A L E G G TLD +A +++ K +LY HF SK +Y + ++
Sbjct 5 IIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIM 64
Query 73 MIQDKQKSFPEHLAFFMLHHLHHPERTV--MFHQIEERLSTTGQGIYDLFQELYQVRKQR 130
M Q+K + L F+ + E M+ Q+ IY Q+L Q +
Sbjct 65 MNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKE 124
Query 131 LRII-----INMTEIYLQEIQSTMTVRDYLAAIWSLTHGAAAILNSSF 173
+ I MT+ Q + YL A +S GA S F
Sbjct 125 IAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQF 172
>A6QKF4 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain Newman)]
Length=186
Score = 39.7 bits (91), Expect = 2e-07
Identities = 43/168 (26%), Positives = 65/168 (39%), Gaps = 10/168 (6%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELY---MLLIVRNERMLLE 72
I + A L E G G TLD +A +++ K +LY HF SK +Y + ++
Sbjct 5 IIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIM 64
Query 73 MIQDKQKSFPEHLAFFMLHHLHHPERTV--MFHQIEERLSTTGQGIYDLFQELYQVRKQR 130
M Q+K + L F+ + E M+ Q+ IY Q+L Q +
Sbjct 65 MNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKE 124
Query 131 LRII-----INMTEIYLQEIQSTMTVRDYLAAIWSLTHGAAAILNSSF 173
+ I MT+ Q + YL A +S GA S F
Sbjct 125 IAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQF 172
>Q9RQQ0 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus aureus (strain NCTC 8325 /
PS 47)]
Length=186
Score = 39.7 bits (91), Expect = 2e-07
Identities = 43/168 (26%), Positives = 65/168 (39%), Gaps = 10/168 (6%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELY---MLLIVRNERMLLE 72
I + A L E G G TLD +A +++ K +LY HF SK +Y + ++
Sbjct 5 IIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIM 64
Query 73 MIQDKQKSFPEHLAFFMLHHLHHPERTV--MFHQIEERLSTTGQGIYDLFQELYQVRKQR 130
M Q+K + L F+ + E M+ Q+ IY Q+L Q +
Sbjct 65 MNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKE 124
Query 131 LRII-----INMTEIYLQEIQSTMTVRDYLAAIWSLTHGAAAILNSSF 173
+ I MT+ Q + YL A +S GA S F
Sbjct 125 IAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQF 172
>A1JHW9 Nucleoid occlusion factor SlmA [Yersinia enterocolitica
serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)]
Length=198
Score = 39.3 bits (90), Expect = 3e-07
Identities = 39/147 (27%), Positives = 71/147 (48%), Gaps = 16/147 (11%)
Query 12 REALIFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRNERMLL 71
RE ++ +A+ L +G +T LAA + +++ LY+HF SK ++ LI E L+
Sbjct 12 REEILQALAQMLESSDGSQRITTAKLAANVGVSEAALYRHFPSKTRMFDSLIEFIEDSLM 71
Query 72 E----MIQDKQKSFPEHLAFFMLHHLHHPERTVMFHQIEERLSTTGQGIYDLFQELYQVR 127
++QD++++F L +L L ER +I TG + +F+ Q R
Sbjct 72 SRINLILQDEKETF-NRLRLILLLVLGFAERNPGLTRI-----MTGHAL--MFE---QDR 120
Query 128 KQ-RLRIIINMTEIYLQEIQSTMTVRD 153
Q R+ + E+ L+++ +RD
Sbjct 121 LQGRINQLFERIEVQLRQVLREKKLRD 147
>A8GLE8 Nucleoid occlusion factor SlmA [Serratia proteamaculans
(strain 568)]
Length=198
Score = 38.9 bits (89), Expect = 3e-07
Identities = 37/135 (27%), Positives = 66/135 (49%), Gaps = 19/135 (14%)
Query 12 REALIFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRNERMLL 71
RE ++ +A+ L +G +T LAA + +++ LY+HF SK ++ LI E L+
Sbjct 12 REEILQALAQMLESSDGSQRITTAKLAANVGVSEAALYRHFPSKTRMFDSLIEFIEDSLI 71
Query 72 E----MIQDKQKSFPEHLAFFMLHHLHHPER-----------TVMFHQIEERLSTTGQGI 116
++QD++++F L +L L ER +MF Q +RL +
Sbjct 72 TRINLILQDEKETF-NRLRLILLLVLGFAERNPGLTRIMTGHALMFEQ--DRLQGRINQL 128
Query 117 YDLFQ-ELYQVRKQR 130
++ + +L QV K+R
Sbjct 129 FERIEAQLRQVLKER 143
>A7ML90 HTH-type transcriptional repressor FabR [Cronobacter sakazakii
(strain ATCC BAA-894)]
Length=211
Score = 38.9 bits (89), Expect = 4e-07
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 0/74 (0%)
Query 6 QAQFRAREALIFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVR 65
Q + R R +L+ QL E A ++L +A E +A + Y+HF+ DEL + ++
Sbjct 6 QQKERTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDE 65
Query 66 NERMLLEMIQDKQK 79
+ ML ++++ ++
Sbjct 66 SGLMLRQLMRQARQ 79
>P44923 Uncharacterized HTH-type transcriptional regulator HI_0893
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd)]
Length=187
Score = 38.5 bits (88), Expect = 4e-07
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (5%)
Query 5 RQAQFRAREALIFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIV 64
RQA+ E IF ++L+ G +++ LA E ++A GT+Y +F++KDEL
Sbjct 2 RQAKTDLAEQ-IFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAH 60
Query 65 RNERMLLEMIQDKQKSFPEHLAFF 88
R M + + +K F E FF
Sbjct 61 RVFSMFMATL---EKDFDETKPFF 81
>Q9KVD2 Nucleoid occlusion factor SlmA [Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=196
Score = 38.5 bits (88), Expect = 5e-07
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 7/151 (5%)
Query 12 REALIFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRNERMLL 71
RE ++ +AE L G + +T LA ++ +++ LY+HF SK ++ LI E L+
Sbjct 10 REEILQALAEMLESNEGASRITTAKLAKQVGVSEAALYRHFPSKARMFEGLIEFIEESLM 69
Query 72 EMIQ---DKQKSFPEHLAFFMLHHLHHPERTVMFHQI--EERLSTTGQGIYDLFQELYQV 126
I D++K + M L ER +I L + + D +L++
Sbjct 70 SRINRIFDEEKDTLNRIRLVMQLLLAFAERNPGLTRILSGHALMFENERLRDRINQLFER 129
Query 127 RKQRLRIIINMTEIYLQEIQSTMTVRDYLAA 157
+ LR I+ E L+E +S + LAA
Sbjct 130 IETSLRQILR--ERKLREGKSFPVDENILAA 158
>Q8G2M8 HTH-type transcriptional repressor BepR [Brucella suis
biovar 1 (strain 1330)]
Length=209
Score = 37.7 bits (86), Expect = 9e-07
Identities = 40/170 (24%), Positives = 73/170 (43%), Gaps = 26/170 (15%)
Query 12 REALIFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVR----NE 67
REA++ AEQ+ LE G TL +A + +G +Y HF+ K +++ +I R E
Sbjct 12 REAILL-AAEQVFLERGVNQSTLTEIACYAGVTRGAIYFHFEDKLDIFQSIIGRARFPQE 70
Query 68 RMLLEM--------IQDKQKSFPEHLAFFMLHHLHHPERTVMFHQIEERLSTTGQGIYDL 119
++L+ + ++S L F + V+F I +R G+ + +
Sbjct 71 EIMLQAARFDHPNPLHILEQSIVAALELFATDE----RQQVVFTIINQRCEYVGE-MAPV 125
Query 120 FQELYQVRKQRLRIIINMTEIYLQEIQSTMTVRDYLAAIWSLTHGAAAIL 169
L ++R L + I + ++ + R LA+ WS A +L
Sbjct 126 IDRLKEMRSDVLALFIGLLKVAER--------RGELASEWSAETAAQILL 167
>P0ACU5 HTH-type transcriptional repressor FabR [Escherichia coli
(strain K12)]
Length=234
Score = 37.7 bits (86), Expect = 1e-06
Identities = 19/74 (26%), Positives = 40/74 (54%), Gaps = 0/74 (0%)
Query 6 QAQFRAREALIFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVR 65
Q + + R +L+ QL E A ++L +A E +A + Y+HF+ DEL + ++
Sbjct 25 QQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDE 84
Query 66 NERMLLEMIQDKQK 79
+ ML ++++ ++
Sbjct 85 SGLMLRQLMRQARQ 98
>P94423 Uncharacterized HTH-type transcriptional regulator YcnC
[Bacillus subtilis (strain 168)]
Length=292
Score = 37.4 bits (85), Expect = 2e-06
Identities = 17/56 (30%), Positives = 34/56 (61%), Gaps = 0/56 (0%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRNERMLL 71
I A +L E +++ A+A E ++K ++YK FQSK++L + L+ N++ ++
Sbjct 8 ILLAARKLFSEKDFTSVSMQAIAEECKMSKASIYKLFQSKEDLLLELLSFNQKQMV 63
Score = 16.9 bits (32), Expect = 6.8
Identities = 8/23 (35%), Positives = 10/23 (43%), Gaps = 0/23 (0%)
Query 99 TVMFHQIEERLSTTGQGIYDLFQ 121
+V I E + IY LFQ
Sbjct 23 SVSMQAIAEECKMSKASIYKLFQ 45
>Q5HKQ1 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus epidermidis (strain ATCC 35984
/ RP62A)]
Length=185
Score = 36.6 bits (83), Expect = 2e-06
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 0/44 (0%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELY 59
I + A L E G G TLD ++ +++ K +LY H+ +K+E+Y
Sbjct 5 IIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIY 48
>Q8GLC6 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus epidermidis]
Length=185
Score = 36.6 bits (83), Expect = 2e-06
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 0/44 (0%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELY 59
I + A L E G G TLD ++ +++ K +LY H+ +K+E+Y
Sbjct 5 IIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIY 48
>P9WMB9 HTH-type transcriptional repressor KstR2 [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=200
Score = 35.8 bits (81), Expect = 4e-06
Identities = 20/57 (35%), Positives = 30/57 (53%), Gaps = 1/57 (2%)
Query 3 MDRQA-QFRAREALIFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDEL 58
MDR A Q +R + E+A + E G T+ +A + G+LY HF SK+E+
Sbjct 1 MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEM 57
>P0A0N4 HTH-type transcriptional regulator QacR [Staphylococcus
aureus]
Length=188
Score = 35.4 bits (80), Expect = 5e-06
Identities = 18/63 (29%), Positives = 34/63 (54%), Gaps = 0/63 (0%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRNERMLLEMIQ 75
I VA++L ++NG T + + +KG LY HF++K+ L++ ++ E E +
Sbjct 7 ILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWK 66
Query 76 DKQ 78
+Q
Sbjct 67 KEQ 69
>Q9RAJ1 HTH-type transcriptional repressor DhaR [Mycobacterium
sp. (strain GP1)]
Length=198
Score = 35.4 bits (80), Expect = 5e-06
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query 16 IFEVAEQLLLENGEAGMTLDALAAELDLAKGTLYKHFQSKDELYMLLIVRNERMLLEMIQ 75
+ E Q+ LE G +G + + A ++ KG+ Y HF+SK+ ++L E
Sbjct 10 LVEKGTQVFLERGYSGSAVQDITAAAEVPKGSFYNHFESKEAF-------GGQVLQEFFS 62
Query 76 DKQKSFPEHL 85
D Q++ L
Sbjct 63 DLQRTISSTL 72
Lambda K H a alpha
0.328 0.139 0.396 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 714420
Database: 34f80d03d55a167267245126e91c411c.SwissProt.fasta
Posted date: May 20, 2024 11:56 PM
Number of letters in database: 5,614
Number of sequences in database: 28
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
