BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: b6ad9c63a5d5fe9eb3925bf02329b1f9.SwissProt.fasta
15 sequences; 1,678 total letters
Query= ACIAD2506
Length=100
Score E
Sequences producing significant alignments: (Bits) Value
Q6F9J0 PqqA binding protein [Acinetobacter baylyi (strain ATCC 33... 199 4e-72
A4VL92 PqqA binding protein [Stutzerimonas stutzeri (strain A1501)] 97.1 9e-32
O33505 PqqA binding protein [Rahnella aquatilis] 96.7 1e-31
P59725 PqqA binding protein [Kluyvera intermedia] 95.9 2e-31
C1DEW6 PqqA binding protein [Azotobacter vinelandii (strain DJ / ... 93.2 3e-30
B5XX59 PqqA binding protein [Klebsiella pneumoniae (strain 342)] 93.2 3e-30
P27506 PqqA binding protein [Klebsiella pneumoniae] 92.8 4e-30
A6V6I1 PqqA binding protein [Pseudomonas aeruginosa (strain PA7)] 90.1 5e-29
Q4ZMC2 PqqA binding protein [Pseudomonas syringae pv. syringae (s... 89.4 1e-28
Q9I2C1 PqqA binding protein [Pseudomonas aeruginosa (strain ATCC ... 89.0 1e-28
Q02LD5 PqqA binding protein [Pseudomonas aeruginosa (strain UCBPP... 89.0 1e-28
B7VAB7 PqqA binding protein [Pseudomonas aeruginosa (strain LESB58)] 89.0 1e-28
P07781 PqqA binding protein [Acinetobacter calcoaceticus] 85.1 5e-27
Q49150 Pyrroloquinoline-quinone synthase / PqqA binding protein [... 42.4 1e-09
Q9L3B1 PqqA binding protein [Gluconobacter oxydans (strain 621H)] 39.7 3e-09
>Q6F9J0 PqqA binding protein [Acinetobacter baylyi (strain ATCC
33305 / BD413 / ADP1)]
Length=99
Score = 199 bits (505), Expect = 4e-72
Identities = 98/99 (99%), Positives = 99/99 (100%), Gaps = 0/99 (0%)
Query 1 LASKRIIRMSDLLHTTPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKL 60
+ASKRIIRMSDLLHTTPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKL
Sbjct 1 MASKRIIRMSDLLHTTPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKL 60
Query 61 TVHDIIQNLSAQFPDATGLDQDIVEFLKQAESRQWICLQ 99
TVHDIIQNLSAQFPDATGLDQDIVEFLKQAESRQWICLQ
Sbjct 61 TVHDIIQNLSAQFPDATGLDQDIVEFLKQAESRQWICLQ 99
>A4VL92 PqqA binding protein [Stutzerimonas stutzeri (strain A1501)]
Length=92
Score = 97.1 bits (240), Expect = 9e-32
Identities = 46/92 (50%), Positives = 66/92 (72%), Gaps = 1/92 (1%)
Query 9 MSDL-LHTTPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQ 67
MS++ L P F RG+RFQWE AQ +V+LYPEG+++LNESA +L ++DG TV I+
Sbjct 1 MSEIQLTQVPSFRRGFRFQWEPAQNCHVLLYPEGMIKLNESAAAVLTEVDGTRTVGAIVA 60
Query 68 NLSAQFPDATGLDQDIVEFLKQAESRQWICLQ 99
+L A++P+A G+ +DIV FL+ A R WI L+
Sbjct 61 DLQARYPEAEGIQEDIVAFLEVAVERFWIELR 92
>O33505 PqqA binding protein [Rahnella aquatilis]
Length=95
Score = 96.7 bits (239), Expect = 1e-31
Identities = 41/83 (49%), Positives = 63/83 (76%), Gaps = 0/83 (0%)
Query 14 HTTPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQF 73
H TP+F RGYR Q+E+ Q +VILYPEG+ +LN+SAT IL+ +DG+ T+ +II L+ +F
Sbjct 7 HYTPMFRRGYRMQFEKTQDCHVILYPEGMAKLNDSATFILQLVDGERTIANIIDELNERF 66
Query 74 PDATGLDQDIVEFLKQAESRQWI 96
P+A G++ D+ +F QA +++WI
Sbjct 67 PEAGGVNDDVKDFFAQAHAQKWI 89
>P59725 PqqA binding protein [Kluyvera intermedia]
Length=92
Score = 95.9 bits (237), Expect = 2e-31
Identities = 43/80 (54%), Positives = 57/80 (71%), Gaps = 0/80 (0%)
Query 17 PVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQFPDA 76
P F RGYR QWE AQ S+V+LYPEG+ +LNE+A IL+ +DGK V I+ L A+FPDA
Sbjct 7 PAFRRGYRMQWEAAQDSHVVLYPEGMAKLNETAVAILELVDGKQDVAAIVATLDARFPDA 66
Query 77 TGLDQDIVEFLKQAESRQWI 96
G+ D+ EFL+ A ++WI
Sbjct 67 GGVGDDVKEFLQSAIEQKWI 86
>C1DEW6 PqqA binding protein [Azotobacter vinelandii (strain DJ
/ ATCC BAA-1303)]
Length=92
Score = 93.2 bits (230), Expect = 3e-30
Identities = 40/84 (48%), Positives = 60/84 (71%), Gaps = 0/84 (0%)
Query 13 LHTTPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQ 72
L+ P RG+RFQWE AQ +V+LYPEG+V+LN+SA IL Q+DG ++ I+ L +
Sbjct 6 LNDIPQLRRGFRFQWEPAQNCHVLLYPEGMVKLNDSAAAILGQVDGDRSIAAIVAALRER 65
Query 73 FPDATGLDQDIVEFLKQAESRQWI 96
FP++ G+++D++EFL+ A R WI
Sbjct 66 FPESDGIEEDVLEFLEVARERSWI 89
>B5XX59 PqqA binding protein [Klebsiella pneumoniae (strain 342)]
Length=92
Score = 93.2 bits (230), Expect = 3e-30
Identities = 43/78 (55%), Positives = 59/78 (76%), Gaps = 0/78 (0%)
Query 19 FNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQFPDATG 78
F RGYR QWE AQ+S+VILYPEG+ +LNE+A IL+ +DG+ V II L+ +FP+A G
Sbjct 9 FRRGYRLQWEAAQESHVILYPEGMAKLNETAAAILELVDGRRDVAAIIAMLNERFPEAGG 68
Query 79 LDQDIVEFLKQAESRQWI 96
+D D+VEFL+ A ++WI
Sbjct 69 VDDDVVEFLQIACQQKWI 86
>P27506 PqqA binding protein [Klebsiella pneumoniae]
Length=92
Score = 92.8 bits (229), Expect = 4e-30
Identities = 42/78 (54%), Positives = 59/78 (76%), Gaps = 0/78 (0%)
Query 19 FNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQFPDATG 78
F RGYR QWE AQ+S+VILYPEG+ +LNE+A IL+ +DG+ V II L+ +FP+A G
Sbjct 9 FRRGYRLQWEAAQESHVILYPEGMAKLNETAAAILELVDGRRDVAAIIAMLNERFPEAGG 68
Query 79 LDQDIVEFLKQAESRQWI 96
+D D++EFL+ A ++WI
Sbjct 69 VDDDVIEFLQIACQQKWI 86
>A6V6I1 PqqA binding protein [Pseudomonas aeruginosa (strain PA7)]
Length=92
Score = 90.1 bits (222), Expect = 5e-29
Identities = 43/87 (49%), Positives = 62/87 (71%), Gaps = 0/87 (0%)
Query 13 LHTTPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQ 72
L + PV RG+RFQ+E AQ +V+LYPEG+V+LN+SA ILK +DG+ V I+ L +
Sbjct 6 LDSVPVLRRGFRFQFEPAQDCHVLLYPEGMVKLNDSAGEILKLVDGRRDVAAIVAALRER 65
Query 73 FPDATGLDQDIVEFLKQAESRQWICLQ 99
FP+ G+D+DI+ FL+ A ++ WI LQ
Sbjct 66 FPEVPGIDEDILTFLEVAHAQFWIELQ 92
>Q4ZMC2 PqqA binding protein [Pseudomonas syringae pv. syringae
(strain B728a)]
Length=94
Score = 89.4 bits (220), Expect = 1e-28
Identities = 42/83 (51%), Positives = 60/83 (72%), Gaps = 0/83 (0%)
Query 16 TPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQFPD 75
TP +++GYRFQ+E AQ+++V+LYPEG+++LNESA LI IDGK T+ II L QFP+
Sbjct 11 TPKWHQGYRFQYEPAQKAHVVLYPEGMIKLNESAALIGGLIDGKRTIAAIIDELHQQFPN 70
Query 76 ATGLDQDIVEFLKQAESRQWICL 98
L D+ EF++ A+ + WI L
Sbjct 71 VPELGMDVDEFMEGAKKKNWIDL 93
>Q9I2C1 PqqA binding protein [Pseudomonas aeruginosa (strain ATCC
15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 /
1C / PRS 101 / PAO1)]
Length=92
Score = 89.0 bits (219), Expect = 1e-28
Identities = 42/87 (48%), Positives = 62/87 (71%), Gaps = 0/87 (0%)
Query 13 LHTTPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQ 72
L + P+ RG+RFQ+E AQ +V+LYPEG+V+LN+SA ILK +DG+ V I+ L +
Sbjct 6 LDSVPMLRRGFRFQFEPAQDCHVLLYPEGMVKLNDSAGEILKLVDGRRDVAAIVAALRER 65
Query 73 FPDATGLDQDIVEFLKQAESRQWICLQ 99
FP+ G+D+DI+ FL+ A ++ WI LQ
Sbjct 66 FPEVPGIDEDILAFLEVAHAQFWIELQ 92
>Q02LD5 PqqA binding protein [Pseudomonas aeruginosa (strain UCBPP-PA14)]
Length=92
Score = 89.0 bits (219), Expect = 1e-28
Identities = 42/87 (48%), Positives = 62/87 (71%), Gaps = 0/87 (0%)
Query 13 LHTTPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQ 72
L + P+ RG+RFQ+E AQ +V+LYPEG+V+LN+SA ILK +DG+ V I+ L +
Sbjct 6 LDSVPMLRRGFRFQFEPAQDCHVLLYPEGMVKLNDSAGEILKLVDGRRDVAAIVAALRER 65
Query 73 FPDATGLDQDIVEFLKQAESRQWICLQ 99
FP+ G+D+DI+ FL+ A ++ WI LQ
Sbjct 66 FPEVPGIDEDILAFLEVAHAQFWIELQ 92
>B7VAB7 PqqA binding protein [Pseudomonas aeruginosa (strain LESB58)]
Length=92
Score = 89.0 bits (219), Expect = 1e-28
Identities = 42/87 (48%), Positives = 62/87 (71%), Gaps = 0/87 (0%)
Query 13 LHTTPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQ 72
L + P+ RG+RFQ+E AQ +V+LYPEG+V+LN+SA ILK +DG+ V I+ L +
Sbjct 6 LDSVPMLRRGFRFQFEPAQDCHVLLYPEGMVKLNDSAGEILKLVDGRRDVAAIVAALRER 65
Query 73 FPDATGLDQDIVEFLKQAESRQWICLQ 99
FP+ G+D+DI+ FL+ A ++ WI LQ
Sbjct 66 FPEVPGIDEDILAFLEVAHAQFWIELQ 92
>P07781 PqqA binding protein [Acinetobacter calcoaceticus]
Length=94
Score = 85.1 bits (209), Expect = 5e-27
Identities = 40/86 (47%), Positives = 59/86 (69%), Gaps = 0/86 (0%)
Query 13 LHTTPVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQ 72
L+ P + +GYRFQ+E AQ +VILYPEG+++LNESA I + IDG+ V II L +
Sbjct 8 LNLVPTWRQGYRFQFEPAQNGFVILYPEGMIKLNESAGAIGQYIDGQQNVSAIIAQLKQK 67
Query 73 FPDATGLDQDIVEFLKQAESRQWICL 98
F D + +DQD+V+++ A+ + WI L
Sbjct 68 FGDISEIDQDVVDYMLVAKQQHWIDL 93
>Q49150 Pyrroloquinoline-quinone synthase / PqqA binding protein
[Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 /
JCM 2805 / NCIMB 9133 / AM1)]
Length=372
Score = 42.4 bits (98), Expect = 1e-09
Identities = 23/72 (32%), Positives = 40/72 (56%), Gaps = 1/72 (1%)
Query 17 PVFNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQF-PD 75
P RG R ++++ + +V+L PE L+++A +LK +DG+ TV I Q L + D
Sbjct 290 PRLPRGVRLRFDEVRNKHVLLAPERTFDLDDNAVAVLKLVDGRNTVSQIAQILGQTYDAD 349
Query 76 ATGLDQDIVEFL 87
++ DI+ L
Sbjct 350 PAIIEADILPML 361
Score = 13.9 bits (24), Expect = 8.8
Identities = 5/17 (29%), Positives = 6/17 (35%), Gaps = 0/17 (0%)
Query 27 WEQAQQSYVILYPEGLV 43
W Q Y G+V
Sbjct 230 WTQLDALYFAYVAPGMV 246
>Q9L3B1 PqqA binding protein [Gluconobacter oxydans (strain 621H)]
Length=96
Score = 39.7 bits (91), Expect = 3e-09
Identities = 19/55 (35%), Positives = 34/55 (62%), Gaps = 0/55 (0%)
Query 19 FNRGYRFQWEQAQQSYVILYPEGLVRLNESATLILKQIDGKLTVHDIIQNLSAQF 73
F RG+R Q ++ + +++ PE + +A IL+ +DGK +V +IIQ L+ +F
Sbjct 16 FARGHRLQHDRVRDVWIVQAPEKAFVVEGAAPHILRLLDGKRSVGEIIQQLAIEF 70
Lambda K H a alpha
0.329 0.141 0.423 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 90576
Database: b6ad9c63a5d5fe9eb3925bf02329b1f9.SwissProt.fasta
Posted date: May 12, 2024 8:20 AM
Number of letters in database: 1,678
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
