BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 0a9fa970fd34f1d8220e2e63dd6b6fa3.SwissProt.fasta
18 sequences; 4,290 total letters
Query= ACIAD2523
Length=334
Score E
Sequences producing significant alignments: (Bits) Value
O05494 Uncharacterized HTH-type transcriptional regulator YdhC [B... 67.0 2e-16
P10585 Gluconate operon transcriptional repressor [Bacillus subti... 57.0 8e-13
P44487 Uxu operon regulator [Haemophilus influenzae (strain ATCC ... 53.9 1e-11
P46833 Gluconate operon transcriptional repressor [Bacillus liche... 51.6 5e-11
P0ACM4 Uncharacterized HTH-type transcriptional regulator YdfH [S... 48.9 3e-10
P0ACM3 Uncharacterized HTH-type transcriptional regulator YdfH [E... 48.9 3e-10
P0ACM2 HTH-type transcriptional repressor RspR [Escherichia coli ... 48.9 3e-10
Q8FHD1 Uncharacterized HTH-type transcriptional regulator YdfH [E... 47.8 8e-10
O07007 HTH-type transcriptional regulator LutR [Bacillus subtilis... 45.1 6e-09
O34817 HTH-type transcriptional repressor NagR [Bacillus subtilis... 43.1 3e-08
P96061 Putative transcriptional regulator of 2-aminoethylphosphon... 40.0 3e-07
Q5PFQ9 Putative transcriptional regulator of 2-aminoethylphosphon... 40.0 3e-07
Q7CR30 Putative transcriptional regulator of 2-aminoethylphosphon... 40.0 3e-07
Q57SD4 Putative transcriptional regulator of 2-aminoethylphosphon... 39.7 4e-07
Q9X9E0 Exu regulon transcriptional regulator [Dickeya chrysanthemi] 37.0 3e-06
P0A8W0 HTH-type transcriptional repressor NanR [Escherichia coli ... 36.6 5e-06
P31460 Galactonate operon transcriptional repressor [Escherichia ... 35.8 7e-06
P42239 Uncharacterized HTH-type transcriptional regulator YcbG [B... 35.8 7e-06
>O05494 Uncharacterized HTH-type transcriptional regulator YdhC
[Bacillus subtilis (strain 168)]
Length=224
Score = 67.0 bits (162), Expect = 2e-16
Identities = 55/210 (26%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query 110 KIYDQLHMTISNIILYGHYRLDEHIIADFFNVSRSVVREALKSLHIQGLIEKEPYGEWLA 169
+ Y+QL I N R++E +A F VSRS +REA++ L GL++ + +
Sbjct 15 QFYNQLKKMIFNGTFKPGERINETQLAKSFGVSRSPIREAMRLLEKDGLLKADDRNGFSI 74
Query 170 GPLTAKSVNENYEIRSVLEPVALKKNIVKLSVAELTEMSSRITQVQH--HPDQINFQLIQ 227
LTAK V+E Y+IR LE +A++ I + ELT + ++ + + H + ++I
Sbjct 75 TSLTAKDVDEIYKIRIPLEQLAVELVIDEADEEELTILEKQLEETEKAIHNGTEDTEII- 133
Query 228 QIEKDLHQTICNVSTFNEKMGNILIHAQSSILISQLLHQAIHVNDY--HLMLNEHAQVFE 285
++ + H+ + + S N + N+L H I ++L+ + D+ +L EH ++FE
Sbjct 134 RLNQKFHELLVDFS-HNRHLKNLLEHVNDLIHFCRILN---YTGDHRAETILREHRRIFE 189
Query 286 ALFYGSVNDAAQALEKHIQSAQKRSVDYLK 315
+ +A ++H+ + ++LK
Sbjct 190 EV----KKKNKEAAKQHVLAHFNHDCEHLK 215
Score = 36.6 bits (83), Expect = 4e-06
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query 6 ITQPTSPRYQTIYEIIKTAITKNHLNYGTVLLEAPLAKLFNTSRVPVRQALQLLCEKQLI 65
+ +PT P Y Y +K I G + E LAK F SR P+R+A++LL + L+
Sbjct 6 LDKPT-PYYLQFYNQLKKMIFNGTFKPGERINETQLAKSFGVSRSPIREAMRLLEKDGLL 64
Query 66 TRFEGRGYLV 75
+ G+ +
Sbjct 65 KADDRNGFSI 74
>P10585 Gluconate operon transcriptional repressor [Bacillus subtilis
(strain 168)]
Length=243
Score = 57.0 bits (136), Expect = 8e-13
Identities = 56/208 (27%), Positives = 95/208 (46%), Gaps = 16/208 (8%)
Query 114 QLHMTISNIILYGHYRLDEHIIADFFNVSRSVVREALKSLHIQGLIEKEPYGEWLAGPLT 173
+L M I + ++ L E+ IA F+VSRS VREALK L + +I E G + G LT
Sbjct 26 ELRMRIVSGLIESGTILSENTIAAEFSVSRSPVREALKILASEKIIRLERMGAVVIG-LT 84
Query 174 AKSVNENYEIRSVLEPVALKKNIVKLSVAELTEMSSRITQVQ------HHPDQINFQLIQ 227
K + E Y++R +LE ++ +VK+ + L + S+I ++ D+ +FQ +
Sbjct 85 EKKIAEIYDVRLLLETFVFER-LVKIDIEPLVKDLSKILEMMKVSIKYEDADEFSFQDVL 143
Query 228 QIEKDLHQTICNV---STFNEKMGNILIHAQSSILISQLLHQAIHVNDYHLMLNEHAQVF 284
H+TI S N+ +S IL+S + D+ +L+ H
Sbjct 144 -----FHETIIRAIDHSYIQMIWNNLKPVMESFILLSMRVRLKEKYEDFTRILDNHELYI 198
Query 285 EALFYGSVNDAAQALEKHIQSAQKRSVD 312
+A+ Q+L ++ Q + D
Sbjct 199 QAIKTKDRALMIQSLHQNFDDVQDKVED 226
Score = 37.0 bits (84), Expect = 3e-06
Identities = 25/74 (34%), Positives = 42/74 (57%), Gaps = 3/74 (4%)
Query 2 PTKLITQPTSPRYQTIYEIIKTAITKNHLNYGTVLLEAPLAKLFNTSRVPVRQALQLLCE 61
P K +++ S + YE+ + I + GT+L E +A F+ SR PVR+AL++L
Sbjct 10 PAKWLSK-ASTGVRVAYEL-RMRIVSGLIESGTILSENTIAAEFSVSRSPVREALKILAS 67
Query 62 KQLITRFEGRGYLV 75
+++I R E G +V
Sbjct 68 EKII-RLERMGAVV 80
>P44487 Uxu operon regulator [Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd)]
Length=266
Score = 53.9 bits (128), Expect = 1e-11
Identities = 54/239 (23%), Positives = 112/239 (47%), Gaps = 25/239 (10%)
Query 110 KIYDQLHMTISNIILYGHYRLDEHI-----IADFFNVSRSVVREALKSLHIQGLIEKEPY 164
+ Y ++ + I G Y + + + I++ F VSR++VREA+ L ++ L+E +
Sbjct 24 RTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKLVEVKK- 82
Query 165 GEWLAGPLTAKSVNENYEIRSVLEPVAL--KKNIVKLSVAELTEMSSRITQVQHHPDQIN 222
G + T +S++ + + P L + +++ S+AE + + + + +N
Sbjct 83 GSGVYVVRTPESIHMEHSDLPDVGPFELLQARQLLESSIAEFAALQATKKDILNLKQILN 142
Query 223 --FQLIQQ------IEKDLHQTICNVSTFNE---KMGNILIHAQSSILISQLLHQAIHVN 271
+L+ Q +KD H + + T N+ K+ L + + + LH I N
Sbjct 143 REKELLTQNQDDYSADKDFHLALAEI-TQNDVLVKLQEQLWQYRFNSAMWAQLHSRILQN 201
Query 272 DY-HLMLNEHAQVFEALFYGSVNDAAQALEKHIQSAQKRSVDYLKVFSIIPEPHIAPYL 329
DY HL + +H + A+ + N+A +A+ +H+++ + + L S + +PH YL
Sbjct 202 DYHHLWIEDHQTILSAIQKKNANEARKAMWQHLENVKVK----LFELSDVEDPHFDGYL 256
Score = 26.9 bits (58), Expect = 0.006
Identities = 18/63 (29%), Positives = 34/63 (54%), Gaps = 1/63 (2%)
Query 14 YQTIYEIIKTAITKNHLNYGTVL-LEAPLAKLFNTSRVPVRQALQLLCEKQLITRFEGRG 72
Y I +++K I++ + G L E +++ F SR VR+A+ +L ++L+ +G G
Sbjct 26 YTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKLVEVKKGSG 85
Query 73 YLV 75
V
Sbjct 86 VYV 88
>P46833 Gluconate operon transcriptional repressor [Bacillus licheniformis]
Length=243
Score = 51.6 bits (122), Expect = 5e-11
Identities = 51/183 (28%), Positives = 86/183 (47%), Gaps = 16/183 (9%)
Query 114 QLHMTISNIILYGHYRLDEHIIADFFNVSRSVVREALKSLHIQGLIEKEPYGEWLAGPLT 173
+L M I + ++ L E+ +A F+VSRS +REALK L + +I E G + G LT
Sbjct 26 ELRMRIISGLIESGTILSENKLAAEFSVSRSPIREALKILASEKIIRLERMGAVVIG-LT 84
Query 174 AKSVNENYEIRSVLEPVALKKNIVKLSVAELTEMSSRITQVQ------HHPDQINFQLIQ 227
K + E Y++R V+E ++ + + +V EL S+I ++ D+ +FQ +
Sbjct 85 EKEIGEIYDVRLVMETFVFER-LGRANVDELVTDLSKILEMMKVSIKYKDADEFSFQDVL 143
Query 228 QIEKDLHQTI---CNVSTFNEKMGNILIHAQSSILISQLLHQAIHVNDYHLMLNEHAQVF 284
H+TI N S N+ +S IL+S D+ +L+ H
Sbjct 144 -----FHETIVRSINHSYILMIWNNLKPVMESFILLSMRARLKEKYEDFERILDNHELYI 198
Query 285 EAL 287
+A+
Sbjct 199 KAI 201
Score = 36.6 bits (83), Expect = 4e-06
Identities = 26/89 (29%), Positives = 45/89 (51%), Gaps = 16/89 (18%)
Query 21 IKTAITKNHLNYGTVLLEAPLAKLFNTSRVPVRQALQLLCEKQLITRFEGRGYLVNPNQQ 80
++ I + GT+L E LA F+ SR P+R+AL++L +++I R E G +V
Sbjct 27 LRMRIISGLIESGTILSENKLAAEFSVSRSPIREALKILASEKII-RLERMGAVV----- 80
Query 81 QIPPLRVSITREMLGTDQHRLLDTRLLSE 109
+ +T + +G + D RL+ E
Sbjct 81 ------IGLTEKEIG----EIYDVRLVME 99
>P0ACM4 Uncharacterized HTH-type transcriptional regulator YdfH
[Shigella flexneri]
Length=228
Score = 48.9 bits (115), Expect = 3e-10
Identities = 41/210 (20%), Positives = 91/210 (43%), Gaps = 4/210 (2%)
Query 96 TDQHRLLDTRLLSEKIYDQLHMTISNIILYGHYRLDEHIIADFFNVSRSVVREALKSLHI 155
T + +L T+ ++++IY L I + ++ L E ++ FNVSR VREA L
Sbjct 2 TVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAE 61
Query 156 QGLIEKEPYGEWLAGPLTAKSVNENYEIRSVLEPVALKKNIVKLSVAELTEMSSRITQVQ 215
GLI+ P ++ V IR +E ++ ++ ++ ++ + Q +
Sbjct 62 NGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQR 121
Query 216 HHPDQINFQLIQQIEKDLHQTICNVSTFNEKMGNILIHAQSSILISQLLHQAI-HVNDYH 274
++ +++ + HQ + ++ I + ++ + + HV+
Sbjct 122 IAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTI---ENLKATVDRVRYMSFDHVSPPE 178
Query 275 LMLNEHAQVFEALFYGSVNDAAQALEKHIQ 304
++L +H +F AL + +A+ +H+Q
Sbjct 179 MLLRQHLDIFSALQKRDGDAVERAMTQHLQ 208
Score = 42.7 bits (99), Expect = 4e-08
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 0/68 (0%)
Query 9 PTSPRYQTIYEIIKTAITKNHLNYGTVLLEAPLAKLFNTSRVPVRQALQLLCEKQLITRF 68
PT P Q IY I++ I + GT L E ++ FN SR PVR+A L E LI
Sbjct 9 PTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIR 68
Query 69 EGRGYLVN 76
RG VN
Sbjct 69 PQRGSYVN 76
>P0ACM3 Uncharacterized HTH-type transcriptional regulator YdfH
[Escherichia coli O157:H7]
Length=228
Score = 48.9 bits (115), Expect = 3e-10
Identities = 41/210 (20%), Positives = 91/210 (43%), Gaps = 4/210 (2%)
Query 96 TDQHRLLDTRLLSEKIYDQLHMTISNIILYGHYRLDEHIIADFFNVSRSVVREALKSLHI 155
T + +L T+ ++++IY L I + ++ L E ++ FNVSR VREA L
Sbjct 2 TVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAE 61
Query 156 QGLIEKEPYGEWLAGPLTAKSVNENYEIRSVLEPVALKKNIVKLSVAELTEMSSRITQVQ 215
GLI+ P ++ V IR +E ++ ++ ++ ++ + Q +
Sbjct 62 NGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQR 121
Query 216 HHPDQINFQLIQQIEKDLHQTICNVSTFNEKMGNILIHAQSSILISQLLHQAI-HVNDYH 274
++ +++ + HQ + ++ I + ++ + + HV+
Sbjct 122 IAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTI---ENLKATVDRVRYMSFDHVSPPE 178
Query 275 LMLNEHAQVFEALFYGSVNDAAQALEKHIQ 304
++L +H +F AL + +A+ +H+Q
Sbjct 179 MLLRQHLDIFSALQKRDGDAVERAMTQHLQ 208
Score = 42.7 bits (99), Expect = 4e-08
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 0/68 (0%)
Query 9 PTSPRYQTIYEIIKTAITKNHLNYGTVLLEAPLAKLFNTSRVPVRQALQLLCEKQLITRF 68
PT P Q IY I++ I + GT L E ++ FN SR PVR+A L E LI
Sbjct 9 PTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIR 68
Query 69 EGRGYLVN 76
RG VN
Sbjct 69 PQRGSYVN 76
>P0ACM2 HTH-type transcriptional repressor RspR [Escherichia coli
(strain K12)]
Length=228
Score = 48.9 bits (115), Expect = 3e-10
Identities = 41/210 (20%), Positives = 91/210 (43%), Gaps = 4/210 (2%)
Query 96 TDQHRLLDTRLLSEKIYDQLHMTISNIILYGHYRLDEHIIADFFNVSRSVVREALKSLHI 155
T + +L T+ ++++IY L I + ++ L E ++ FNVSR VREA L
Sbjct 2 TVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAE 61
Query 156 QGLIEKEPYGEWLAGPLTAKSVNENYEIRSVLEPVALKKNIVKLSVAELTEMSSRITQVQ 215
GLI+ P ++ V IR +E ++ ++ ++ ++ + Q +
Sbjct 62 NGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQR 121
Query 216 HHPDQINFQLIQQIEKDLHQTICNVSTFNEKMGNILIHAQSSILISQLLHQAI-HVNDYH 274
++ +++ + HQ + ++ I + ++ + + HV+
Sbjct 122 IAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTI---ENLKATVDRVRYMSFDHVSPPE 178
Query 275 LMLNEHAQVFEALFYGSVNDAAQALEKHIQ 304
++L +H +F AL + +A+ +H+Q
Sbjct 179 MLLRQHLDIFSALQKRDGDAVERAMTQHLQ 208
Score = 42.7 bits (99), Expect = 4e-08
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 0/68 (0%)
Query 9 PTSPRYQTIYEIIKTAITKNHLNYGTVLLEAPLAKLFNTSRVPVRQALQLLCEKQLITRF 68
PT P Q IY I++ I + GT L E ++ FN SR PVR+A L E LI
Sbjct 9 PTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIR 68
Query 69 EGRGYLVN 76
RG VN
Sbjct 69 PQRGSYVN 76
>Q8FHD1 Uncharacterized HTH-type transcriptional regulator YdfH
[Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=228
Score = 47.8 bits (112), Expect = 8e-10
Identities = 41/210 (20%), Positives = 90/210 (43%), Gaps = 4/210 (2%)
Query 96 TDQHRLLDTRLLSEKIYDQLHMTISNIILYGHYRLDEHIIADFFNVSRSVVREALKSLHI 155
T + +L T ++++IY L I + ++ L E ++ FNVSR VREA L
Sbjct 2 TVETQLNPTPPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAE 61
Query 156 QGLIEKEPYGEWLAGPLTAKSVNENYEIRSVLEPVALKKNIVKLSVAELTEMSSRITQVQ 215
GLI+ P ++ V IR +E ++ ++ ++ ++ + Q +
Sbjct 62 NGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQR 121
Query 216 HHPDQINFQLIQQIEKDLHQTICNVSTFNEKMGNILIHAQSSILISQLLHQAI-HVNDYH 274
++ +++ + HQ + ++ I + ++ + + HV+
Sbjct 122 IAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTI---ENLKATVDRVRYMSFDHVSPPE 178
Query 275 LMLNEHAQVFEALFYGSVNDAAQALEKHIQ 304
++L +H +F AL + +A+ +H+Q
Sbjct 179 MLLRQHLDIFSALQKRDGDAVERAMTQHLQ 208
Score = 42.4 bits (98), Expect = 5e-08
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 0/68 (0%)
Query 9 PTSPRYQTIYEIIKTAITKNHLNYGTVLLEAPLAKLFNTSRVPVRQALQLLCEKQLITRF 68
PT P Q IY I++ I + GT L E ++ FN SR PVR+A L E LI
Sbjct 9 PTPPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIR 68
Query 69 EGRGYLVN 76
RG VN
Sbjct 69 PQRGSYVN 76
>O07007 HTH-type transcriptional regulator LutR [Bacillus subtilis
(strain 168)]
Length=219
Score = 45.1 bits (105), Expect = 6e-09
Identities = 43/194 (22%), Positives = 90/194 (46%), Gaps = 26/194 (13%)
Query 135 IADFFNVSRSVVREALKSLHIQGLIE-KEPYGEWL--------AGPLTAKSVNENYEIRS 185
+A+ F VSRS VREAL +L GL+E K+ G +L + PL+A + + +++
Sbjct 19 LAESFQVSRSAVREALSALKAMGLVEMKQGEGTYLKEFELNQISQPLSAALLMKKEDVKQ 78
Query 186 VLEPVALKKNIVKLSVAELTEMSSRITQVQHHPD--------QINFQLIQQIEKDLHQTI 237
+LE + ++++ VA L ++ D + + +L ++ + H +
Sbjct 79 LLE----VRKLLEIGVASLAAEKRTEADLERIQDALKEMGSIEADGELGEKADFAFHLAL 134
Query 238 CNVSTFNEKMGNILIHAQSSILISQLLHQAIHV----NDYHLMLNEHAQVFEALFYGSVN 293
+ S NE + +++ H S +L + + I + + EH +++ A+ G+
Sbjct 135 ADASQ-NELLKHLMNHVSSLLLETMRETRKIWLFSKKTSVQRLYEEHERIYNAVAAGNGA 193
Query 294 DAAQALEKHIQSAQ 307
A A+ H+ + +
Sbjct 194 QAEAAMLAHLTNVE 207
Score = 27.7 bits (60), Expect = 0.003
Identities = 26/71 (37%), Positives = 34/71 (48%), Gaps = 4/71 (6%)
Query 41 LAKLFNTSRVPVRQALQLLCEKQLITRFEGRG-YLVNPNQQQI-PPLRVSITREMLGTDQ 98
LA+ F SR VR+AL L L+ +G G YL QI PL ++ M D
Sbjct 19 LAESFQVSRSAVREALSALKAMGLVEMKQGEGTYLKEFELNQISQPLSAALL--MKKEDV 76
Query 99 HRLLDTRLLSE 109
+LL+ R L E
Sbjct 77 KQLLEVRKLLE 87
>O34817 HTH-type transcriptional repressor NagR [Bacillus subtilis
(strain 168)]
Length=243
Score = 43.1 bits (100), Expect = 3e-08
Identities = 37/105 (35%), Positives = 49/105 (47%), Gaps = 5/105 (5%)
Query 8 QPTSPRYQTIYEIIKTAITKNHLNYGTVL-LEAPLAKLFNTSRVPVRQALQLLCEKQLIT 66
Q P Y I E +KT I L L E A+ F SR+ VRQAL L + L+
Sbjct 6 QSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLY 65
Query 67 RFEGRGYLVN-PNQQQIPPLRVSITREMLG---TDQHRLLDTRLL 107
R +GRG V+ P +Q S T +M T RL+D +L+
Sbjct 66 RLKGRGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLI 110
Score = 26.6 bits (57), Expect = 0.008
Identities = 19/51 (37%), Positives = 27/51 (53%), Gaps = 1/51 (2%)
Query 110 KIYDQLHMTISNIILYGHYRL-DEHIIADFFNVSRSVVREALKSLHIQGLI 159
+I +QL I N L L E A+ F +SR VR+AL +L +GL+
Sbjct 14 QIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLL 64
>P96061 Putative transcriptional regulator of 2-aminoethylphosphonate
degradation operons [Salmonella typhi]
Length=239
Score = 40.0 bits (92), Expect = 3e-07
Identities = 31/98 (32%), Positives = 47/98 (48%), Gaps = 2/98 (2%)
Query 12 PRYQTIYEIIKTAITKNHLNYGTVL-LEAPLAKLFNTSRVPVRQALQLLCEKQLITRFEG 70
P+Y I ++ I L G L E L +FNT+R+ +R++L L LI R +
Sbjct 9 PQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFNTTRITIRESLAQLESSGLIWRADR 68
Query 71 RGYLVNPNQQQIPPLRVSITREMLGTDQHRLLDTRLLS 108
RG+ V P + + P + + L +Q R T LLS
Sbjct 69 RGWFVTPERLWLDPTQ-NTNFHKLCREQGREPKTALLS 105
Score = 26.9 bits (58), Expect = 0.006
Identities = 13/40 (33%), Positives = 18/40 (45%), Gaps = 0/40 (0%)
Query 132 EHIIADFFNVSRSVVREALKSLHIQGLIEKEPYGEWLAGP 171
E + FN +R +RE+L L GLI + W P
Sbjct 36 ERELCAIFNTTRITIRESLAQLESSGLIWRADRRGWFVTP 75
>Q5PFQ9 Putative transcriptional regulator of 2-aminoethylphosphonate
degradation operons [Salmonella paratyphi A (strain
ATCC 9150 / SARB42)]
Length=239
Score = 40.0 bits (92), Expect = 3e-07
Identities = 31/98 (32%), Positives = 47/98 (48%), Gaps = 2/98 (2%)
Query 12 PRYQTIYEIIKTAITKNHLNYGTVL-LEAPLAKLFNTSRVPVRQALQLLCEKQLITRFEG 70
P+Y I ++ I L G L E L +FNT+R+ +R++L L LI R +
Sbjct 9 PQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFNTTRITIRESLAQLESSGLIWRADR 68
Query 71 RGYLVNPNQQQIPPLRVSITREMLGTDQHRLLDTRLLS 108
RG+ V P + + P + + L +Q R T LLS
Sbjct 69 RGWFVTPERLWLDPTQ-NTNFHKLCREQGREPKTALLS 105
Score = 26.9 bits (58), Expect = 0.006
Identities = 13/40 (33%), Positives = 18/40 (45%), Gaps = 0/40 (0%)
Query 132 EHIIADFFNVSRSVVREALKSLHIQGLIEKEPYGEWLAGP 171
E + FN +R +RE+L L GLI + W P
Sbjct 36 ERELCAIFNTTRITIRESLAQLESSGLIWRADRRGWFVTP 75
>Q7CR30 Putative transcriptional regulator of 2-aminoethylphosphonate
degradation operons [Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720)]
Length=239
Score = 40.0 bits (92), Expect = 3e-07
Identities = 31/98 (32%), Positives = 47/98 (48%), Gaps = 2/98 (2%)
Query 12 PRYQTIYEIIKTAITKNHLNYGTVL-LEAPLAKLFNTSRVPVRQALQLLCEKQLITRFEG 70
P+Y I ++ I L G L E L +FNT+R+ +R++L L LI R +
Sbjct 9 PQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFNTTRITIRESLAQLESSGLIWRADR 68
Query 71 RGYLVNPNQQQIPPLRVSITREMLGTDQHRLLDTRLLS 108
RG+ V P + + P + + L +Q R T LLS
Sbjct 69 RGWFVTPERLWLDPTQ-NTNFHKLCREQGREPKTALLS 105
Score = 26.9 bits (58), Expect = 0.006
Identities = 13/40 (33%), Positives = 18/40 (45%), Gaps = 0/40 (0%)
Query 132 EHIIADFFNVSRSVVREALKSLHIQGLIEKEPYGEWLAGP 171
E + FN +R +RE+L L GLI + W P
Sbjct 36 ERELCAIFNTTRITIRESLAQLESSGLIWRADRRGWFVTP 75
>Q57SD4 Putative transcriptional regulator of 2-aminoethylphosphonate
degradation operons [Salmonella choleraesuis (strain
SC-B67)]
Length=239
Score = 39.7 bits (91), Expect = 4e-07
Identities = 31/98 (32%), Positives = 47/98 (48%), Gaps = 2/98 (2%)
Query 12 PRYQTIYEIIKTAITKNHLNYGTVL-LEAPLAKLFNTSRVPVRQALQLLCEKQLITRFEG 70
P+Y I ++ I L G L E L +FNT+R+ +R++L L LI R +
Sbjct 9 PQYLLIKAQLQERIQSGALKSGDKLPSERELCAIFNTTRITIRESLAQLESSGLIWRADR 68
Query 71 RGYLVNPNQQQIPPLRVSITREMLGTDQHRLLDTRLLS 108
RG+ V P + + P + + L +Q R T LLS
Sbjct 69 RGWFVTPERLWLDPTQ-NTNFHKLCREQGREPKTALLS 105
Score = 26.9 bits (58), Expect = 0.006
Identities = 13/40 (33%), Positives = 18/40 (45%), Gaps = 0/40 (0%)
Query 132 EHIIADFFNVSRSVVREALKSLHIQGLIEKEPYGEWLAGP 171
E + FN +R +RE+L L GLI + W P
Sbjct 36 ERELCAIFNTTRITIRESLAQLESSGLIWRADRRGWFVTP 75
>Q9X9E0 Exu regulon transcriptional regulator [Dickeya chrysanthemi]
Length=259
Score = 37.0 bits (84), Expect = 3e-06
Identities = 45/220 (20%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Query 108 SEKIYDQLHMTISNIILYGHYRLDEHI-----IADFFNVSRSVVREALKSLHIQGLIE-K 161
S ++Y QL + I G Y + + + I++ NVSR+VVREA+ L ++G +E +
Sbjct 6 SRRLYQQLAAELKQRIENGVYPVGDKLPAERNISEEMNVSRTVVREAIIMLEVEGYVEVR 65
Query 162 EPYGEWLAGP-----LTAKSVNENYEIRSVLEPV----ALKKNIVKLSVAELTEMS-SRI 211
+ G + L A + ++ E + ++ NI + + ++T ++
Sbjct 66 KGSGIHVISNQQRHLLAANGSDADFLTAGPFELLQARQLIESNIAEFAATQVTRQDIIQL 125
Query 212 TQVQHHPDQINFQLIQQIEKDLHQTICNVSTFNEKMGNILIHAQSSILIS---QLLHQAI 268
++Q + Q + + + H + ++T N M I+ S + + + LH+ I
Sbjct 126 MEIQENARQEDRFRDSEWDLKFHVQVA-LATQNSAMATIVEKMWSQRIHNPYWRKLHEHI 184
Query 269 HVNDYHLMLNEHAQVFEALFYGSVNDAAQALEKHIQSAQK 308
+H Q+ +AL A A+ +H+++ ++
Sbjct 185 DDKSIESWCEDHDQILKALIRKDPYAAKLAMWQHLENTKQ 224
Score = 24.6 bits (52), Expect = 0.032
Identities = 26/97 (27%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query 14 YQTIYEIIKTAITKNHLNYGTVL-LEAPLAKLFNTSRVPVRQALQLLCEKQLITRFEGRG 72
YQ + +K I G L E +++ N SR VR+A+ +L + + +G G
Sbjct 10 YQQLAAELKQRIENGVYPVGDKLPAERNISEEMNVSRTVVREAIIMLEVEGYVEVRKGSG 69
Query 73 YLVNPNQQQIPPLRVSITREMLGTDQHRLLDTRLLSE 109
V NQQ+ + L LL R L E
Sbjct 70 IHVISNQQRHLLAANGSDADFLTAGPFELLQARQLIE 106
>P0A8W0 HTH-type transcriptional repressor NanR [Escherichia coli
(strain K12)]
Length=263
Score = 36.6 bits (83), Expect = 5e-06
Identities = 47/231 (20%), Positives = 96/231 (42%), Gaps = 33/231 (14%)
Query 100 RLLDTRLLSEKIYDQLHMTISNIIL-YGHYRLDEHIIADFFNVSRSVVREALKSLHIQGL 158
R L + LSE + ++L I G E + FFNV R VREAL +L +GL
Sbjct 25 RPLARKKLSEMVEEELEQMIRRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGL 84
Query 159 IE---------KEPYGEWLAGPLTAKSVN--------ENYEIRSVLEPVALKKNIVKLSV 201
++ P + + G L+ + + ++E + +L + + +
Sbjct 85 VQINNGERARVSRPSADTIIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHAT 144
Query 202 AELTEMSSRITQVQHHPDQINFQLIQQIEKDLHQTICNVSTFNEKMGNILIHAQSSILIS 261
E ++ ++ ++ N I+ + D H+ + + GN + A L+
Sbjct 145 DEQIDLLAKALEINSQSLDNNAAFIRS-DVDFHRVLAEIP------GNPIFMAIHVALLD 197
Query 262 QLL-------HQAIHVNDYHLMLNEHAQVFEALFYGSVNDAAQALEKHIQS 305
L+ QA+H ++ ++ +H + +A+ ++A +AL+ H+ S
Sbjct 198 WLIAARPTVTDQALHEHN-NVSYQQHIAIVDAIRRHDPDEADRALQSHLNS 247
Score = 23.1 bits (48), Expect = 0.099
Identities = 16/52 (31%), Positives = 23/52 (44%), Gaps = 1/52 (2%)
Query 15 QTIYEIIKTAITKNHLNYGTVL-LEAPLAKLFNTSRVPVRQALQLLCEKQLI 65
+ + E ++ I + G L E L FN R VR+AL L K L+
Sbjct 34 EMVEEELEQMIRRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLV 85
>P31460 Galactonate operon transcriptional repressor [Escherichia
coli (strain K12)]
Length=229
Score = 35.8 bits (81), Expect = 7e-06
Identities = 44/225 (20%), Positives = 98/225 (44%), Gaps = 35/225 (16%)
Query 113 DQLHMTISNIILYGHYRLDEHIIADF-----FNVSRSVVREALKSLHIQGLIEKE----- 162
D++ +T+ I++G Y + A+ F SR+++RE +SL + LIE +
Sbjct 7 DRIVITLGKQIVHGKYVPGSPLPAEAELCEEFATSRNIIREVFRSLMAKRLIEMKRYRGA 66
Query 163 ---PYGEW-----------LAGPLTAKSVNENYEIRSVLEPVALKKNIVKLSVAELTEMS 208
P +W L + ++ E+R+++EP + + + ++L ++
Sbjct 67 FVAPRNQWNYLDTDVLQWVLENDYDPRLISAMSEVRNLVEPAIARWAAERATSSDLAQIE 126
Query 209 SRITQ-VQHHPDQINFQLIQQIEKDLHQTICNVSTFNEKMGNILIHAQSSILISQLLHQA 267
S + + + ++ D+ + + + H+ + S N + + I S + + + +
Sbjct 127 SALNEMIANNQDR---EAFNEADIRYHEAVLQ-SVHNPVLQQLSIAISS---LQRAVFER 179
Query 268 IHVNDYHLM---LNEHAQVFEALFYGSVNDAAQALEKHIQSAQKR 309
+ D M L EH +F+A+ + + A QA I S+ +R
Sbjct 180 TWMGDEANMPQTLQEHKALFDAIRHQDGDAAEQAALTMIASSTRR 224
>P42239 Uncharacterized HTH-type transcriptional regulator YcbG
[Bacillus subtilis (strain 168)]
Length=233
Score = 35.8 bits (81), Expect = 7e-06
Identities = 42/201 (21%), Positives = 87/201 (43%), Gaps = 25/201 (12%)
Query 102 LDTRLLSEKIYDQL-HMTISNIILYGHYRLDEHIIADFFNVSRSVVREALKSLHIQGLIE 160
++ + L++++ +++ H+ S + G E + D +VSR V+REAL SL G+I
Sbjct 13 VNRKTLAKQVIERIVHLLSSGQLRAGDKLPTEMELMDILHVSRPVLREALSSLETLGVIT 72
Query 161 K--------------EPYGEWLAGPLTAKSVNENYEIRSVLEPVALKKNIVKLSVAELTE 206
+ +P+ LA L ++ E R LE + K++ EL
Sbjct 73 RKTRGGTYFNDKIGMQPFSVMLA--LATDNLPAIIEARMALELGLVTIAAEKINEEELQR 130
Query 207 MSSRITQVQHHPDQINFQLIQQIEKDLHQTICNVSTFNEKMGNILIHAQSSILISQLLHQ 266
+ I + + D + +K+ H+ I +S N + ++ QS ++ +
Sbjct 131 LQKTIDDIANSTD----NHYGEADKEFHRIIA-LSANNPVVEGMI---QSLLITHAKIDS 182
Query 267 AIHVNDYHLMLNEHAQVFEAL 287
I + + + H ++++AL
Sbjct 183 QIPYRERDVTVEYHKKIYDAL 203
Score = 19.6 bits (39), Expect = 1.2
Identities = 16/52 (31%), Positives = 24/52 (46%), Gaps = 1/52 (2%)
Query 17 IYEIIKTAITKNHLNYGTVL-LEAPLAKLFNTSRVPVRQALQLLCEKQLITR 67
+ E I ++ L G L E L + + SR +R+AL L +ITR
Sbjct 22 VIERIVHLLSSGQLRAGDKLPTEMELMDILHVSRPVLREALSSLETLGVITR 73
Lambda K H a alpha
0.322 0.136 0.387 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1005720
Database: 0a9fa970fd34f1d8220e2e63dd6b6fa3.SwissProt.fasta
Posted date: May 21, 2024 12:04 AM
Number of letters in database: 4,290
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
