BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: aa6bd6c3f2ba6949e4687980e297faa9.TrEMBL.fasta
           20 sequences; 6,807 total letters



Query= ACIAD2557

Length=342
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A7G2SCM6 tRNA-dihydrouridine synthase B [Acinetobacter sp]          672     0.0   
Q6F9E2 tRNA-dihydrouridine synthase B [Acinetobacter baylyi (stra...  672     0.0   
A0A0B0KME6 tRNA-dihydrouridine synthase B [Acinetobacter sp. neg1]    623     0.0   
A0A3N4RUY6 tRNA-dihydrouridine synthase B [Acinetobacter sp. BIGb...  622     0.0   
N9PW32 tRNA-dihydrouridine synthase B [Acinetobacter courvalinii]     622     0.0   
A0A1Q3N8A2 tRNA-dihydrouridine synthase B [Acinetobacter sp. 38-8]    621     0.0   
A0A829HG88 tRNA-dihydrouridine synthase B [Acinetobacter gyllenbe...  621     0.0   
K9A5Z0 tRNA-dihydrouridine synthase B [Acinetobacter sp. WC-141]      620     0.0   
N9PMR9 tRNA-dihydrouridine synthase B [Acinetobacter colistinires...  620     0.0   
N9FM21 tRNA-dihydrouridine synthase B [Acinetobacter beijerinckii...  620     0.0   
A0A8B6X914 tRNA-dihydrouridine synthase B [Derxia gummosa DSM 723]    375     2e-133
Q14SX5 tRNA-dihydrouridine synthase [Ruminococcus flavefaciens]       216     3e-71 
A0A0N9SFG3 tRNA dihydrouridine synthase [Rathayibacter toxicus]       191     1e-61 
A0A0N9RSK8 tRNA dihydrouridine synthase [Rathayibacter toxicus]       189     1e-60 
A0A0N9SGF1 tRNA dihydrouridine synthase [Rathayibacter toxicus]       189     1e-60 
Q8GQD1 tRNA-dihydrouridine synthase [Leptospira interrogans]          186     1e-59 
Q9WXV1 tRNA-dihydrouridine synthase [Thermotoga maritima (strain ...  156     2e-48 
Q5EXK0 tRNA-dihydrouridine(16) synthase [Klebsiella pneumoniae]       114     2e-32 
Q6PEH0 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] [Danio rerio]     105     5e-28 
Q9XZE8 NifR3 homolog X2 [Oxytricha trifallax]                         70.1    3e-18 


>A0A7G2SCM6 tRNA-dihydrouridine synthase B [Acinetobacter sp]
Length=341

 Score = 672 bits (1733),  Expect = 0.0
 Identities = 341/341 (100%), Positives = 341/341 (100%), Gaps = 0/341 (0%)

Query  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60
            MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF
Sbjct  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60

Query  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120
            DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL
Sbjct  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120

Query  121  VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
            VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST
Sbjct  121  VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180

Query  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240
            ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY
Sbjct  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240

Query  241  LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300
            LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM
Sbjct  241  LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300

Query  301  YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSIK  341
            YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSIK
Sbjct  301  YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSIK  341


>Q6F9E2 tRNA-dihydrouridine synthase B [Acinetobacter baylyi (strain 
ATCC 33305 / BD413 / ADP1)]
Length=341

 Score = 672 bits (1733),  Expect = 0.0
 Identities = 341/341 (100%), Positives = 341/341 (100%), Gaps = 0/341 (0%)

Query  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60
            MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF
Sbjct  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60

Query  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120
            DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL
Sbjct  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120

Query  121  VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
            VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST
Sbjct  121  VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180

Query  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240
            ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY
Sbjct  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240

Query  241  LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300
            LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM
Sbjct  241  LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300

Query  301  YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSIK  341
            YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSIK
Sbjct  301  YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSIK  341


>A0A0B0KME6 tRNA-dihydrouridine synthase B [Acinetobacter sp. 
neg1]
Length=341

 Score = 623 bits (1607),  Expect = 0.0
 Identities = 313/341 (92%), Positives = 329/341 (96%), Gaps = 0/341 (0%)

Query  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60
            MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF
Sbjct  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60

Query  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120
            DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL
Sbjct  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120

Query  121  VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
            VARILDAVVAAVDVPVTLKTRLGFLNG ENILRVAK+AE+SGIAALALHGRTREDMYL+T
Sbjct  121  VARILDAVVAAVDVPVTLKTRLGFLNGHENILRVAKRAEESGIAALALHGRTREDMYLNT  180

Query  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240
            ARY+LIKQVK ++ IP+IANGDIDSP+KAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY
Sbjct  181  ARYELIKQVKELIDIPLIANGDIDSPEKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240

Query  241  LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300
            LKTGEHLAAPDIAEVK VLLGHL+ELY FYGEYSGCRIARKHIAWYTKGL SSNEFRQNM
Sbjct  241  LKTGEHLAAPDIAEVKAVLLGHLAELYEFYGEYSGCRIARKHIAWYTKGLRSSNEFRQNM  300

Query  301  YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSIK  341
            Y+VE+TAEQA++VE+YF+ LL QGQ MSDVQ E V+LL IK
Sbjct  301  YKVENTAEQAKVVESYFDQLLDQGQRMSDVQAEQVNLLDIK  341


>A0A3N4RUY6 tRNA-dihydrouridine synthase B [Acinetobacter sp. 
BIGb0102]
Length=341

 Score = 622 bits (1604),  Expect = 0.0
 Identities = 312/341 (91%), Positives = 329/341 (96%), Gaps = 0/341 (0%)

Query  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60
            MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF
Sbjct  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60

Query  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120
            DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL
Sbjct  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120

Query  121  VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
            VARILDAVVAAVDVPVTLKTRLGFLNG ENILRVAK+AE+SGIAALALHGRTREDMYL+T
Sbjct  121  VARILDAVVAAVDVPVTLKTRLGFLNGHENILRVAKRAEESGIAALALHGRTREDMYLNT  180

Query  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240
            ARY+LIKQVK ++ IP+IANGDIDSP+KAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY
Sbjct  181  ARYELIKQVKQLIDIPLIANGDIDSPEKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240

Query  241  LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300
            LKTGEHLAAPDIAEVK VLLGHL+ELY FYGEYSGCRIARKHIAWYTKGL SSNEFRQNM
Sbjct  241  LKTGEHLAAPDIAEVKAVLLGHLAELYEFYGEYSGCRIARKHIAWYTKGLRSSNEFRQNM  300

Query  301  YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSIK  341
            Y+VE+TA+QA++VE+YF+ LL QGQ MSDVQ E V+LL IK
Sbjct  301  YKVENTADQAKVVESYFDQLLDQGQRMSDVQAEQVNLLDIK  341


>N9PW32 tRNA-dihydrouridine synthase B [Acinetobacter courvalinii]
Length=341

 Score = 622 bits (1603),  Expect = 0.0
 Identities = 312/341 (91%), Positives = 329/341 (96%), Gaps = 0/341 (0%)

Query  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60
            MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF
Sbjct  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60

Query  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120
            DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL
Sbjct  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120

Query  121  VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
            VARILDAVVAAVDVPVTLKTRLGFLNG ENILRVAK+AE+SGIAALALHGRTREDMYL+T
Sbjct  121  VARILDAVVAAVDVPVTLKTRLGFLNGHENILRVAKRAEESGIAALALHGRTREDMYLNT  180

Query  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240
            ARY+LIKQVK ++ IP+IANGDIDSP+KAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY
Sbjct  181  ARYELIKQVKQLIDIPLIANGDIDSPEKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240

Query  241  LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300
            LKTGEHLAAPDIAEVK VLLGHL+ELY FYGEYSGCRIARKHIAWYTKGL SSNEFRQNM
Sbjct  241  LKTGEHLAAPDIAEVKAVLLGHLAELYAFYGEYSGCRIARKHIAWYTKGLRSSNEFRQNM  300

Query  301  YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSIK  341
            Y+VE+TA+QA++VE+YF+ LL QGQ MSDVQ E V+LL IK
Sbjct  301  YKVENTADQAKVVESYFDQLLDQGQRMSDVQVEQVNLLDIK  341


>A0A1Q3N8A2 tRNA-dihydrouridine synthase B [Acinetobacter sp. 
38-8]
Length=341

 Score = 621 bits (1602),  Expect = 0.0
 Identities = 312/341 (91%), Positives = 329/341 (96%), Gaps = 0/341 (0%)

Query  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60
            MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF
Sbjct  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60

Query  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120
            DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL
Sbjct  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120

Query  121  VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
            VARILDAVVAAVDVPVTLKTRLGFLNG ENILRVAK+AE+SGIAALALHGRTREDMYL+T
Sbjct  121  VARILDAVVAAVDVPVTLKTRLGFLNGHENILRVAKRAEESGIAALALHGRTREDMYLNT  180

Query  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240
            ARY+LIKQVK ++ IP+IANGDIDSP+KAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY
Sbjct  181  ARYELIKQVKELIDIPLIANGDIDSPEKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240

Query  241  LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300
            LKTG+HLAAPDIAEVK VLLGHLSELY+FYGEYSGCRIARKHIAWYTKGL SSNEFRQNM
Sbjct  241  LKTGKHLAAPDIAEVKAVLLGHLSELYQFYGEYSGCRIARKHIAWYTKGLRSSNEFRQNM  300

Query  301  YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSIK  341
            Y+VE+TA+QA++VEAYFN LL  GQ MSDV+ E V+LL IK
Sbjct  301  YKVENTADQAKVVEAYFNQLLDLGQRMSDVEVEQVNLLDIK  341


>A0A829HG88 tRNA-dihydrouridine synthase B [Acinetobacter gyllenbergii 
CIP 110306 = MTCC 11365]
Length=340

 Score = 621 bits (1602),  Expect = 0.0
 Identities = 311/340 (91%), Positives = 330/340 (97%), Gaps = 0/340 (0%)

Query  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60
            MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF
Sbjct  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60

Query  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120
            DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL
Sbjct  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120

Query  121  VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
            VARILDAVVAAVDVPVTLKTRLGFLNG ENILRVAK+AE+SGIAALALHGRTREDMYL+T
Sbjct  121  VARILDAVVAAVDVPVTLKTRLGFLNGHENILRVAKRAEESGIAALALHGRTREDMYLNT  180

Query  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240
            ARY+LIKQVK+++ IP+IANGDIDSP+KAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY
Sbjct  181  ARYELIKQVKALIDIPLIANGDIDSPEKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240

Query  241  LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300
            LKTGEHLAAPDIAEVK VLLGHL+ELY+FYGEYSGCRIARKHIAWYTKGL SSNEFRQNM
Sbjct  241  LKTGEHLAAPDIAEVKTVLLGHLAELYQFYGEYSGCRIARKHIAWYTKGLRSSNEFRQNM  300

Query  301  YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSI  340
            Y+VE+TA+QA++VE+YF+ LL QG  MSDVQ EHV+LL I
Sbjct  301  YKVENTADQAKVVESYFDELLDQGLRMSDVQVEHVNLLDI  340


>K9A5Z0 tRNA-dihydrouridine synthase B [Acinetobacter sp. WC-141]
Length=341

 Score = 620 bits (1600),  Expect = 0.0
 Identities = 311/338 (92%), Positives = 325/338 (96%), Gaps = 0/338 (0%)

Query  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60
            MYIG YQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF
Sbjct  1    MYIGPYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60

Query  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120
            DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL
Sbjct  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120

Query  121  VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
            VARILDAVV AVDVPVTLKTRLGFLNGQENILRVAK+AE++GIAALALHGRTREDMYL+T
Sbjct  121  VARILDAVVTAVDVPVTLKTRLGFLNGQENILRVAKRAEEAGIAALALHGRTREDMYLNT  180

Query  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240
            ARYDLIK VK ++ IPVIANGDIDSP+KAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY
Sbjct  181  ARYDLIKHVKELINIPVIANGDIDSPEKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240

Query  241  LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300
            LKTGEHLAAP+I EVK+VLLGHLSELY+FYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM
Sbjct  241  LKTGEHLAAPNIEEVKDVLLGHLSELYQFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300

Query  301  YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLL  338
            Y+VESTAEQA +VE YFN LL +G LMSDVQ E V+LL
Sbjct  301  YKVESTAEQALVVENYFNQLLAEGNLMSDVQVEQVNLL  338


>N9PMR9 tRNA-dihydrouridine synthase B [Acinetobacter colistiniresistens]
Length=341

 Score = 620 bits (1598),  Expect = 0.0
 Identities = 311/341 (91%), Positives = 330/341 (97%), Gaps = 0/341 (0%)

Query  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60
            MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF
Sbjct  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60

Query  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120
            DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL
Sbjct  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120

Query  121  VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
            VARILDAVVAAVDVPVTLKTRLGFLNG ENI+RVAK+AE+SGIAALALHGRTREDMYL+T
Sbjct  121  VARILDAVVAAVDVPVTLKTRLGFLNGHENIMRVAKRAEESGIAALALHGRTREDMYLNT  180

Query  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240
            ARY+LIKQVK ++ IP+IANGDIDSP+KAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY
Sbjct  181  ARYELIKQVKELIDIPLIANGDIDSPEKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240

Query  241  LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300
            LKTGEHLAAPDIAEVK VLLGHL+ELY+FYGEYSGCRIARKHIAWYTKGL SSNEFRQ+M
Sbjct  241  LKTGEHLAAPDIAEVKTVLLGHLAELYQFYGEYSGCRIARKHIAWYTKGLRSSNEFRQSM  300

Query  301  YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSIK  341
            Y+VE+TA+QA++VEAYF+ LL QGQ MSDVQ E V+LL IK
Sbjct  301  YKVENTADQAKVVEAYFDQLLDQGQRMSDVQVELVNLLDIK  341


>N9FM21 tRNA-dihydrouridine synthase B [Acinetobacter beijerinckii 
CIP 110307]
Length=341

 Score = 620 bits (1598),  Expect = 0.0
 Identities = 311/341 (91%), Positives = 326/341 (96%), Gaps = 0/341 (0%)

Query  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60
            MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF
Sbjct  1    MYIGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANF  60

Query  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120
            DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL
Sbjct  61   DGELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDL  120

Query  121  VARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
            VARILDAVVAAVDVPVTLKTRLGFLNG ENILRVAK+AE+SGIAALALHGRTREDMYL+T
Sbjct  121  VARILDAVVAAVDVPVTLKTRLGFLNGHENILRVAKRAEESGIAALALHGRTREDMYLNT  180

Query  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240
            ARYDLIKQVK ++ IP+IANGDIDSP+KAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY
Sbjct  181  ARYDLIKQVKELIDIPLIANGDIDSPEKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHY  240

Query  241  LKTGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNM  300
            LKTGEHL APDI EVK+VLLGHL+ELY+FYGEYSGCRIARKHIAWYTKGL SSNEFRQNM
Sbjct  241  LKTGEHLPAPDIQEVKDVLLGHLAELYQFYGEYSGCRIARKHIAWYTKGLRSSNEFRQNM  300

Query  301  YQVESTAEQARLVEAYFNHLLMQGQLMSDVQTEHVDLLSIK  341
            Y+VEST +QAR+VEAYF  LL  GQ MSDVQ E ++LL IK
Sbjct  301  YKVESTVDQARVVEAYFEQLLDLGQRMSDVQVEQINLLEIK  341


>A0A8B6X914 tRNA-dihydrouridine synthase B [Derxia gummosa DSM 
723]
Length=347

 Score = 375 bits (963),  Expect = 2e-133
 Identities = 193/318 (61%), Positives = 229/318 (72%), Gaps = 0/318 (0%)

Query  3    IGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANFDG  62
            IG +  +NN+ VAPMAGVTDRPFR LC+ FGAGHAVSEM  ++  L  ++K+  R N DG
Sbjct  7    IGRFTTANNVFVAPMAGVTDRPFRALCRRFGAGHAVSEMAASNPKLWGTEKTQRRLNHDG  66

Query  63   ELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDLVA  122
            E +P + QIAG+DP  LAEAARY V  GA+I+DINMGCPAKKVCN  AGSALL+DE LVA
Sbjct  67   EASPRAVQIAGADPVMLAEAARYNVDRGAEIIDINMGCPAKKVCNVAAGSALLRDEALVA  126

Query  123  RILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLSTAR  182
            RIL++VVAAVDVPVTLKTR G+   Q N +RVA+ AEQSGIA L LHGRTR D+Y   A 
Sbjct  127  RILESVVAAVDVPVTLKTRTGWSREQRNAIRVARIAEQSGIALLTLHGRTRADLYEGEAE  186

Query  183  YDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHYLK  242
            YD I  VK+ + IPV+ANGDIDSP KA  VL +T ADA+M+GRAAQGRPWIFREIAH+L 
Sbjct  187  YDTIAAVKAEVGIPVVANGDIDSPAKAARVLAHTKADAVMVGRAAQGRPWIFREIAHHLA  246

Query  243  TGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNMYQ  302
            TG  L  P I EV++ L+ HL   Y FYGE +G R ARKHI WY + L     FR  M  
Sbjct  247  TGGQLPPPTIGEVRDALVEHLHSHYAFYGELTGLRTARKHIGWYVRDLPGGETFRARMNT  306

Query  303  VESTAEQARLVEAYFNHL  320
            +EST  Q      + + L
Sbjct  307  LESTQAQVEATVEFLDSL  324


>Q14SX5 tRNA-dihydrouridine synthase [Ruminococcus flavefaciens]
Length=332

 Score = 216 bits (550),  Expect = 3e-71
 Identities = 125/317 (39%), Positives = 177/317 (56%), Gaps = 4/317 (1%)

Query  3    IGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANFDG  62
            IG+  +     +APMAGV DR +R +CK +GA + VSEM++A       +K+        
Sbjct  7    IGNVTIPRTAALAPMAGVADRAYRLMCKRYGAAYVVSEMVSAKGICYSDRKTAELCTVTE  66

Query  63   ELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDLVA  122
            E  P++ Q+ GS+P+ +AEA +  +     I+DINMGCP  KV    AGSAL++D  L A
Sbjct  67   EERPMAVQLFGSEPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTGAGSALMKDPALAA  126

Query  123  RILDAVV-AAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLSTA  181
             I +A V AA D PVT+K R G+ +   N   +A+  E SG AA+A+HGRTR+  Y   +
Sbjct  127  AITEAAVKAAGDTPVTVKIRSGWSSDSINAPEMARALEASGTAAIAVHGRTRDMFYSGQS  186

Query  182  RYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHYL  241
              ++IK VK  +++PVI NGDI   +    +   TG D +MIGR + G P+IFREIA  +
Sbjct  187  DMNVIKAVKEAVSVPVIGNGDITDAESCAEMYGRTGCDLVMIGRGSYGNPFIFREIAARM  246

Query  242  KTGEHLAAPDIAEVKEVLLGHLSELYRFYG--EYSGCRIARKHIAWYTKGLHSSNEFRQN  299
            + G     P + E   V+L H+  +       E      ARKH AWY  G + S +FR  
Sbjct  247  E-GSEYQPPSLEEKMRVMLEHIRLIAGLSEKCEELAMHEARKHAAWYMNGYYGSAKFRGR  305

Query  300  MYQVESTAEQARLVEAY  316
             YQ+ S AE   L E +
Sbjct  306  CYQLSSYAEAEALAEEF  322


>A0A0N9SFG3 tRNA dihydrouridine synthase [Rathayibacter toxicus]
Length=332

 Score = 191 bits (485),  Expect = 1e-61
 Identities = 116/315 (37%), Positives = 167/315 (53%), Gaps = 4/315 (1%)

Query  3    IGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANFDG  62
            IG       +++APMAG+T+  FR LC+ FG G  VSEM+T+   +  + +S+       
Sbjct  4    IGPLAFDAPVVLAPMAGITNTAFRRLCREFGHGLYVSEMITSRALIERTPESMRLIRHHP  63

Query  63   ELAPISAQIAGSDPEQLAEAARYQVANG-AQIVDINMGCPAKKVCNKLAGSALLQDEDLV  121
              +  S Q+ G DP+ +AEA    V    A  +D+N GCP  KV  K  G+AL     L 
Sbjct  64   SESVRSIQLYGVDPKTVAEAVTMLVTEDRADHIDLNFGCPVPKVTRKGGGAALPWKLSLF  123

Query  122  ARILD-AVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
              I++ AV AA D+P+T+K R G        L  A+ AE +G+AA+ALH RT  + Y   
Sbjct  124  REIVEGAVRAAGDLPLTIKMRKGIDPDHLTYLEAARAAEGAGVAAIALHARTASEFYSGH  183

Query  181  ARYDLIKQVKSILT-IPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAH  239
            A +  I  +K  +T IPV+ NGDI S + A  ++  TG D +++GR   GRPW+F ++A 
Sbjct  184  ADWSAIAALKEAVTSIPVLGNGDIWSAEHALRMMGETGCDGVVVGRGCLGRPWLFGDLAA  243

Query  240  YLKTGEHLAAPDIAEVKEVLLGHLSELYRFY-GEYSGCRIARKHIAWYTKGLHSSNEFRQ  298
                 +    P +A+V E    H   L  F+  E  GCR  RKH+AWY KG     + R 
Sbjct  244  AFAGSDERFRPSLAQVVEAFRRHAELLVDFFESEERGCRDIRKHVAWYFKGYEVGGDLRA  303

Query  299  NMYQVESTAEQARLV  313
             +  VES A+   L+
Sbjct  304  RLATVESLAQLDELL  318


>A0A0N9RSK8 tRNA dihydrouridine synthase [Rathayibacter toxicus]
Length=332

 Score = 189 bits (479),  Expect = 1e-60
 Identities = 116/315 (37%), Positives = 166/315 (53%), Gaps = 4/315 (1%)

Query  3    IGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANFDG  62
            IG       +++APMAG+T+  FR LC+ FG G  VSEM+T+   +  + +S+       
Sbjct  4    IGPLAFDAPVVLAPMAGITNTAFRRLCREFGHGLYVSEMITSRALIERTPESMRLIRHHP  63

Query  63   ELAPISAQIAGSDPEQLAEAARYQVANG-AQIVDINMGCPAKKVCNKLAGSALLQDEDLV  121
              +  S Q+ G DP+ +AEA    V    A  +D+N GCP  KV  K  G+AL     L 
Sbjct  64   SESVRSIQLYGVDPKTVAEAVTMLVTEDRADHIDLNFGCPVPKVTRKGGGAALPWKLSLF  123

Query  122  ARILD-AVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
              I++ AV AA D+P+T+K R G        L  A+ AE +G+AA+ALH RT  + Y   
Sbjct  124  REIVEGAVRAAGDLPLTIKMRKGIDPDHLTYLEAARAAEGAGVAAIALHARTASEFYSGH  183

Query  181  ARYDLIKQVKSILT-IPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAH  239
            A +  I  +K  +T IPV+ NGDI S + A  ++  TG D +++GR   GRPW+F ++A 
Sbjct  184  ADWSAIAALKEAVTSIPVLGNGDIWSAEHALRMMGETGCDGVVVGRGCLGRPWLFGDLAA  243

Query  240  YLKTGEHLAAPDIAEVKEVLLGHLSELYRFY-GEYSGCRIARKHIAWYTKGLHSSNEFRQ  298
                      P +A+V E    H   L  F+  E  GCR  RKH+AWY KG     + R 
Sbjct  244  AFAGSGERFRPSLAQVVEAFRRHAELLVDFFESEERGCRDIRKHVAWYFKGYAVGGDLRA  303

Query  299  NMYQVESTAEQARLV  313
             +  VES A+   L+
Sbjct  304  RLATVESLAQLDELL  318


>A0A0N9SGF1 tRNA dihydrouridine synthase [Rathayibacter toxicus]
Length=332

 Score = 189 bits (479),  Expect = 1e-60
 Identities = 116/315 (37%), Positives = 166/315 (53%), Gaps = 4/315 (1%)

Query  3    IGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANFDG  62
            IG       +++APMAG+T+  FR LC+ FG G  VSEM+T+   +  + +S+       
Sbjct  4    IGPLAFDAPVVLAPMAGITNTAFRRLCREFGHGLYVSEMITSRALIERTPESMRLIRHHP  63

Query  63   ELAPISAQIAGSDPEQLAEAARYQVANG-AQIVDINMGCPAKKVCNKLAGSALLQDEDLV  121
              +  S Q+ G DP+ +AEA    V    A  +D+N GCP  KV  K  G+AL     L 
Sbjct  64   SESVRSIQLYGVDPKTVAEAVTMLVTEDRADHIDLNFGCPVPKVTRKGGGAALPWKLSLF  123

Query  122  ARILD-AVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLST  180
              I++ AV AA D+P+T+K R G        L  A+ AE +G+AA+ALH RT  + Y   
Sbjct  124  REIVEGAVRAAGDLPLTIKMRKGIDPDHLTYLEAARAAEGAGVAAIALHARTASEFYSGH  183

Query  181  ARYDLIKQVKSILT-IPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAH  239
            A +  I  +K  +T IPV+ NGDI S + A  ++  TG D +++GR   GRPW+F ++A 
Sbjct  184  ADWSAIAALKEAVTSIPVLGNGDIWSAEHALRMMGETGCDGVVVGRGCLGRPWLFGDLAA  243

Query  240  YLKTGEHLAAPDIAEVKEVLLGHLSELYRFY-GEYSGCRIARKHIAWYTKGLHSSNEFRQ  298
                      P +A+V E    H   L  F+  E  GCR  RKH+AWY KG     + R 
Sbjct  244  AFAGSGERFRPSLAQVVEAFRRHAELLVDFFESEERGCRDIRKHVAWYFKGYAVGGDLRA  303

Query  299  NMYQVESTAEQARLV  313
             +  VES A+   L+
Sbjct  304  RLATVESLAQLDELL  318


>Q8GQD1 tRNA-dihydrouridine synthase [Leptospira interrogans]
Length=329

 Score = 186 bits (471),  Expect = 1e-59
 Identities = 106/302 (35%), Positives = 167/302 (55%), Gaps = 8/302 (3%)

Query  3    IGSYQLSNNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANFDG  62
            IG+  +   + ++PMAG++D P R +C+ FGA  + +E +  D+ +  + K+L    +  
Sbjct  4    IGNVTIPGKISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKALKMFRYKL  63

Query  63   ELAPISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDLVA  122
            E  PI+ QI G+  E +AEAA         I+D+NMGC  +KV  + AG+ LL+   L  
Sbjct  64   EERPITFQIFGNRLEIIAEAAEIIQELKPDIIDLNMGCSTRKVSLRGAGAGLLRRPLLAG  123

Query  123  RILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLSTAR  182
            +I++A+   V++PVT K R+G+ +   N L V+K  E+SG+ AL +HGRT+E  Y   A 
Sbjct  124  KIIEAIKKRVNIPVTAKIRIGWDSTSRNYLEVSKILEESGVDALTVHGRTKEMAYTGFAD  183

Query  183  YDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHYLK  242
            +D I ++K    IP+  NGDI S Q+A + +D    D ++IGR A G PWIF        
Sbjct  184  WDAIGEIKVNRKIPIFGNGDIKSFQEANFKIDKYLLDGVLIGRNAIGNPWIF--------  235

Query  243  TGEHLAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNMYQ  302
            +G        +EV  V+L HL  +   YGE  G  + RKH+  Y  GL     ++  + +
Sbjct  236  SGVKKEELSWSEVLAVILQHLRWMIEDYGEEFGLVLFRKHLVKYLNGLEFDLAWKTELLE  295

Query  303  VE  304
            ++
Sbjct  296  IK  297


>Q9WXV1 tRNA-dihydrouridine synthase [Thermotoga maritima (strain 
ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)]
Length=306

 Score = 156 bits (394),  Expect = 2e-48
 Identities = 107/314 (34%), Positives = 168/314 (54%), Gaps = 24/314 (8%)

Query  14   VAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLRMSKKSLYRANFDGELAP------I  67
            +APMAG TD  FRTL   +GA  A SEM++A   L  S+K+        EL P      +
Sbjct  7    LAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKT-------EELLPQPHERNV  59

Query  68   SAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDLVARILDA  127
            + QI GS+P +L+EAAR  ++   + +D+N GCP +KV  K AG ALL+D      I+  
Sbjct  60   AVQIFGSEPNELSEAARI-LSEKYKWIDLNAGCPVRKVVKKGAGGALLKDLRHFRYIVRE  118

Query  128  VVAAVDVPVTLKTRLGF-LNGQENILRVAKQAEQSGIAALALHGRTREDMYLSTARYDLI  186
            +  +V    ++KTRLG+  N  E I R+  +    G+  + +H RT    +   A +  +
Sbjct  119  LRKSVSGKFSVKTRLGWEKNEVEEIYRILVE---EGVDEVFIHTRTVVQSFTGRAEWKAL  175

Query  187  KQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAHYLKTGEH  246
              ++    IP   +GDI +P+ AK  L+ +G D +++ R A GRPWIF++I  +L++G++
Sbjct  176  SVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKY  233

Query  247  LAAPDIAEVKEVLLGHLSELYRFYGEYSGCRIARKHIAWYTKGLHSSNEFRQNMYQVEST  306
             + P   E+      HL  L +  GE       RK +A YTK L  +  FR+ + ++E  
Sbjct  234  -SEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMKIE--  290

Query  307  AEQARLVEAYFNHL  320
             E   L E ++N +
Sbjct  291  -EVQILKEMFYNFI  303


>Q5EXK0 tRNA-dihydrouridine(16) synthase [Klebsiella pneumoniae]
Length=312

 Score = 114 bits (285),  Expect = 2e-32
 Identities = 86/239 (36%), Positives = 126/239 (53%), Gaps = 13/239 (5%)

Query  12   LIVAPMAGVTDRPFRTLCKYFGAGH-AVSEMMTADKTLRMSKKSLYRAN---FDGELAP-  66
            +++APM GV D   R L          ++E +     L +  KS YR      +  L P 
Sbjct  3    VLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQL-LPVKSFYRLCPELHNNSLTPS  61

Query  67   ---ISAQIAGSDPEQLAEAARYQVANGAQIVDINMGCPAKKVCNKLAGSALLQDEDLVAR  123
               +  Q+ G  P+ LAE A   V  G+  VD+N GCP+K V     G+ LL+D +L+ R
Sbjct  62   GTRVRVQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKLVNGSGGGATLLKDPELIYR  121

Query  124  ILDAVVAAV--DVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMY-LST  180
               A+  AV   +PVT+K RLG+ +G E    +A   +Q+G + L +HGRT+ED Y    
Sbjct  122  GAKAMREAVPTHLPVTVKVRLGWDSG-ERRFEIADAVQQAGASELVVHGRTKEDGYKAER  180

Query  181  ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREIAH  239
              +  I +++  LTIPV+ANG+I   Q A+  L  TG D++MIGR A   P + R I +
Sbjct  181  IDWQAIGEIRQRLTIPVVANGEIWDWQSAQDCLAATGCDSVMIGRGALNVPNLSRVIKY  239


>Q6PEH0 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] [Danio rerio]
Length=660

 Score = 105 bits (261),  Expect = 5e-28
 Identities = 70/232 (30%), Positives = 110/232 (47%), Gaps = 7/232 (3%)

Query  10   NNLIVAPMAGVTDRPFRTLCKYFGAGHAVSEMMTADKTLR--MSKKSLYRANFDGELAPI  67
            + L +AP+    + PFR +CK FGA     EM      L+   S+ +L + +   +L   
Sbjct  315  DKLYLAPLTTCGNLPFRRVCKRFGADITCGEMAMCTNLLQGQASEWALLKRHASEDL--F  372

Query  68   SAQIAGSDPEQLAEAARYQVAN-GAQIVDINMGCPAKKVCNKLAGSALLQDEDLVARILD  126
              Q+ G  P+ +   A     N     VDIN GCP   V  K  G  L+       +I+ 
Sbjct  373  GVQLEGCFPDTMTRCAELLNQNIDVDFVDINSGCPIDLVYKKGGGCGLMTRTSKFEQIVR  432

Query  127  AVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHGRTREDMYLSTARYDLI  186
             + + +DVP+T+K R G         ++  + ++ G++ + LHGR+RE  Y   A +D I
Sbjct  433  GMNSVLDVPLTVKIRTGVQQNSNIAHKLIPEMKKWGVSLITLHGRSREQRYTKLADWDYI  492

Query  187  KQVKSILT-IPVIANGDIDSPQKAKYVLDYTGADAIMIGRAAQGRPWIFREI  237
                 +   +P+  NGDI S + A    + TG   IM+ R A  +PW+F EI
Sbjct  493  NTCAQLAAPVPLFGNGDILSYEDAMKARE-TGVSGIMVARGALIKPWLFTEI  543


>Q9XZE8 NifR3 homolog X2 [Oxytricha trifallax]
Length=116

 Score = 70.1 bits (170),  Expect = 3e-18
 Identities = 40/109 (37%), Positives = 64/109 (59%), Gaps = 4/109 (4%)

Query  111  GSALLQDEDLVARILDAVVAAVDVPVTLKTRLGFLNGQENILRVAKQAEQSGIAALALHG  170
            GS LL+  +L+  ++  +   + VPVT K R   L  +E+ L++A+  E+ G A L +HG
Sbjct  4    GSFLLEKTELIRSLVTTLAQNLKVPVTCKVRC--LPNEEDTLKLARMIEECGAALLVVHG  61

Query  171  RTREDMYLST--ARYDLIKQVKSILTIPVIANGDIDSPQKAKYVLDYTG  217
            RTRE     T  A +++I+++K  L IPVIANG + + +     L+Y G
Sbjct  62   RTREHKKQQTGPANWEIIRKIKQSLRIPVIANGGMATYEDCMKCLEYLG  110



Lambda      K        H        a         alpha
   0.321    0.135    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1707311


  Database: aa6bd6c3f2ba6949e4687980e297faa9.TrEMBL.fasta
    Posted date:  Jun 3, 2024  6:33 PM
  Number of letters in database: 6,807
  Number of sequences in database:  20



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40