BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 059f225c44d2acbc7b6c0e4f5a6b6f91.SwissProt.fasta
           1 sequences; 364 total letters



Query= ACIAD2558

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P77562 Uncharacterized protein YaiW [Escherichia coli (strain K12)]   193     2e-62


>P77562 Uncharacterized protein YaiW [Escherichia coli (strain 
K12)]
Length=364

 Score = 193 bits (490),  Expect = 2e-62
 Identities = 123/395 (31%), Positives = 203/395 (51%), Gaps = 45/395 (11%)

Query  11   LKPFGLFAICVAFAGCGDTSWWSKNDDPELKSEQ-------IRKLIPSRVHDRQSWANDI  63
            L    L A+ V  AGC      S+   P  K E+       +R+ +P+ V DR +WA D+
Sbjct  7    LSSLSLLAVLV-LAGCS-----SQAPQPLKKGEKAIDVASVVRQKMPASVKDRDAWAKDL  60

Query  64   NDIMEKLKIPKTKDNVCSVVAIVDQESNFVANPVVAGLGEKAVKEVSTRLNEKFEEKLGT  123
                E   +  T +NVCSV+A+  QESN+ A+P V GL + A +E+  R           
Sbjct  61   ATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIAWQEIDRRAERMHIP----  116

Query  124  TIGGQVAGYFEDVLKNQPTPDDNYMSQMRRVRTEKDLDVLYRQIFDYMASHYHVSALTGA  183
                  A      LK +     +Y  ++  VRTEK L  ++  + + +            
Sbjct  117  ------AFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLINMVP-----------  159

Query  184  AKLVGQDIAEKMNPITTLGSMQVNIVYAKEN-KRVKLQSVNNLRDDLYTQYGGLYYGIHR  242
               +GQ +   +NP+ T G MQV+I +A+++ K    +    +R +++++ GGL++G + 
Sbjct  160  ---MGQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYH  216

Query  243  LMLYQTSYDKPIYRFADYNSGMYSSRNAALQSMLNKLGDEQLTEDGDLLLYNKDGSIQST  302
            L+ Y  SY  PIYRFAD+N+G Y+SRNAA Q+ ++K    +L  DGDL+ Y+       T
Sbjct  217  LLNYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSK-EPGKT  275

Query  303  RSSSEKALIKIFTLNNVLLTPNQIRTDLKQEKSQSFEQTPTYIAITKLYQKQTGKEAPYA  362
              ++ K   K+       ++ ++IR  L++  S SFE+T  Y  + +L + +TGK  P  
Sbjct  276  ELATRKLAAKLG------MSDSEIRRQLEKGDSFSFEETALYKKVYQLAETKTGKSLPRE  329

Query  363  MMPQVIISGPKLSRDYNTNWYASRVNGRYQTCMQR  397
            M+P + +  PK++R+  T W+A RV+ R   CM++
Sbjct  330  MLPGIQLESPKITRNLTTAWFAKRVDERRARCMKQ  364


 Score = 29.3 bits (64),  Expect = 1e-04
 Identities = 12/27 (44%), Positives = 17/27 (63%), Gaps = 1/27 (4%)

Query  377  DYNTNWYASRVNGRYQTCMQRAKRIKL  403
            D+N  WYASR N  +Q  + +A  +KL
Sbjct  233  DFNAGWYASR-NAAFQNAVSKASGVKL  258



Lambda      K        H        a         alpha
   0.318    0.133    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124916


  Database: 059f225c44d2acbc7b6c0e4f5a6b6f91.SwissProt.fasta
    Posted date:  Jun 2, 2024  10:32 AM
  Number of letters in database: 364
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40