BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 0be24a4ded9e5fafa88ed2ab0a5188f3.SwissProt.fasta
20 sequences; 4,520 total letters
Query= ACIAD2588
Length=203
Score E
Sequences producing significant alignments: (Bits) Value
Q6F9B5 Thymidylate kinase [Acinetobacter baylyi (strain ATCC 3330... 399 9e-148
A3M7Q1 Thymidylate kinase [Acinetobacter baumannii (strain ATCC 1... 319 6e-116
B0VTL6 Thymidylate kinase [Acinetobacter baumannii (strain SDF)] 318 1e-115
B2HWQ7 Thymidylate kinase [Acinetobacter baumannii (strain ACICU)] 318 1e-115
B0VCV4 Thymidylate kinase [Acinetobacter baumannii (strain AYE)] 316 1e-114
B7I585 Thymidylate kinase [Acinetobacter baumannii (strain AB0057)] 316 1e-114
B7GYE0 Thymidylate kinase [Acinetobacter baumannii (strain AB307-... 316 1e-114
B0KF60 Thymidylate kinase [Pseudomonas putida (strain GB-1)] 188 4e-64
A4VMR6 Thymidylate kinase [Stutzerimonas stutzeri (strain A1501)] 187 6e-64
B1J4Z5 Thymidylate kinase [Pseudomonas putida (strain W619)] 186 2e-63
A4XST1 Thymidylate kinase [Pseudomonas mendocina (strain ymp)] 186 3e-63
A5WBP5 Thymidylate kinase [Psychrobacter sp. (strain PRwf-1)] 185 4e-63
Q48L36 Thymidylate kinase [Pseudomonas savastanoi pv. phaseolicol... 184 1e-62
P0A720 Thymidylate kinase [Escherichia coli (strain K12)] 139 9e-45
O69169 Thymidylate kinase [Yersinia pestis] 137 3e-44
Q7WSH2 Thymidylate kinase [Onion yellows phytoplasma (strain OY-M)] 129 3e-41
P9WKE1 Thymidylate kinase [Mycobacterium tuberculosis (strain ATC... 42.4 2e-08
Q0WW55 Thymidylate kinase [Arabidopsis thaliana] 42.4 2e-08
P83749 Signal recognition particle receptor FtsY [Thermus aquaticus] 35.4 5e-06
D4GYW6 Signal recognition particle receptor FtsY [Haloferax volca... 33.9 2e-05
>Q6F9B5 Thymidylate kinase [Acinetobacter baylyi (strain ATCC
33305 / BD413 / ADP1)]
Length=202
Score = 399 bits (1026), Expect = 9e-148
Identities = 202/202 (100%), Positives = 202/202 (100%), Gaps = 0/202 (0%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS
Sbjct 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT
Sbjct 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
Query 121 FVSHMPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIKR 180
FVSHMPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIKR
Sbjct 121 FVSHMPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIKR 180
Query 181 LDATQAPEIVFQEALEHIQALV 202
LDATQAPEIVFQEALEHIQALV
Sbjct 181 LDATQAPEIVFQEALEHIQALV 202
>A3M7Q1 Thymidylate kinase [Acinetobacter baumannii (strain ATCC
17978 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)]
Length=199
Score = 319 bits (817), Expect = 6e-116
Identities = 155/198 (78%), Positives = 180/198 (91%), Gaps = 0/198 (0%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
MFISFEGTEGVGKTTLIRK+++HFE GKQVVLTREPGGTPLAEQIRS+LLAVNHDE MS
Sbjct 1 MFISFEGTEGVGKTTLIRKIHQHFEEQGKQVVLTREPGGTPLAEQIRSMLLAVNHDENMS 60
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
DTELLL+YAARAQHLQQVI+PAL K+VLSDRFTDAS+AYQC GRGLS+DKL LNQ
Sbjct 61 HDTELLLIYAARAQHLQQVILPALESNKIVLSDRFTDASFAYQCSGRGLSQDKLQLLNQN 120
Query 121 FVSHMPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIKR 180
FVS MP++TFWLDAPIELGM+RARERGALDRFEQEK+ FF +VR+GY+ L ++ PERIKR
Sbjct 121 FVSRMPEVTFWLDAPIELGMNRARERGALDRFEQEKLSFFTKVREGYETLWKVEPERIKR 180
Query 181 LDATQAPEIVFQEALEHI 198
LDATQ+P+ VF++AL+++
Sbjct 181 LDATQSPDQVFEQALQYL 198
>B0VTL6 Thymidylate kinase [Acinetobacter baumannii (strain SDF)]
Length=199
Score = 318 bits (815), Expect = 1e-115
Identities = 155/198 (78%), Positives = 179/198 (90%), Gaps = 0/198 (0%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
MFISFEGTEGVGKTTLIRK+++HFE GKQVVLTREPGGTPLAEQIRS+LLAVNHDE MS
Sbjct 1 MFISFEGTEGVGKTTLIRKIHQHFEEQGKQVVLTREPGGTPLAEQIRSMLLAVNHDENMS 60
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
DTELLL+YAARAQHLQQVI+PAL K+VLSDRFTDAS+AYQC GRGLS+DKL LNQ
Sbjct 61 HDTELLLIYAARAQHLQQVILPALESNKIVLSDRFTDASFAYQCSGRGLSQDKLQLLNQN 120
Query 121 FVSHMPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIKR 180
FVS MP++TFWLDAPIELGM+RARERGALDRFEQEK+ FF +VR+GY+ L + PERIKR
Sbjct 121 FVSRMPEVTFWLDAPIELGMNRARERGALDRFEQEKLSFFTKVREGYETLWKAEPERIKR 180
Query 181 LDATQAPEIVFQEALEHI 198
LDATQ+P+ VF++AL+++
Sbjct 181 LDATQSPDQVFEQALQYL 198
>B2HWQ7 Thymidylate kinase [Acinetobacter baumannii (strain ACICU)]
Length=199
Score = 318 bits (815), Expect = 1e-115
Identities = 155/198 (78%), Positives = 179/198 (90%), Gaps = 0/198 (0%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
MFISFEGTEGVGKTTLIRK+++HFE GKQVVLTREPGGTPLAEQIRS+LLAVNHDE MS
Sbjct 1 MFISFEGTEGVGKTTLIRKIHQHFEEQGKQVVLTREPGGTPLAEQIRSMLLAVNHDENMS 60
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
DTELLL+YAARAQHLQQVI+PAL K+VLSDRFTDAS+AYQC GRGLS+DKL LNQ
Sbjct 61 HDTELLLIYAARAQHLQQVILPALESNKIVLSDRFTDASFAYQCSGRGLSQDKLQLLNQN 120
Query 121 FVSHMPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIKR 180
FVS MP++TFWLDAPIELGM+RARERGALDRFEQEK+ FF +VR+GY+ L + PERIKR
Sbjct 121 FVSRMPEVTFWLDAPIELGMNRARERGALDRFEQEKLSFFTKVREGYETLWKAEPERIKR 180
Query 181 LDATQAPEIVFQEALEHI 198
LDATQ+P+ VF++AL+++
Sbjct 181 LDATQSPDQVFEQALQYL 198
>B0VCV4 Thymidylate kinase [Acinetobacter baumannii (strain AYE)]
Length=199
Score = 316 bits (809), Expect = 1e-114
Identities = 154/198 (78%), Positives = 179/198 (90%), Gaps = 0/198 (0%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
MFISFEGTEGVGKTTLIRK+++HFE GKQVVLTREPGGTPLAEQIRS+LLAVNH+E MS
Sbjct 1 MFISFEGTEGVGKTTLIRKIHQHFEEQGKQVVLTREPGGTPLAEQIRSMLLAVNHNENMS 60
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
DTELLL+YAARAQHLQQVI+PAL K+VLSDRFTDAS+AYQC GRGLS+DKL LNQ
Sbjct 61 HDTELLLIYAARAQHLQQVILPALESNKIVLSDRFTDASFAYQCSGRGLSQDKLQLLNQN 120
Query 121 FVSHMPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIKR 180
FVS MP++TFWLDAPIELGM+RARERGALDRFEQEK+ FF +VR+GY+ L + PERIKR
Sbjct 121 FVSSMPEVTFWLDAPIELGMNRARERGALDRFEQEKLSFFTKVREGYETLWKAEPERIKR 180
Query 181 LDATQAPEIVFQEALEHI 198
LDATQ+P+ VF++AL+++
Sbjct 181 LDATQSPDQVFEQALQYL 198
>B7I585 Thymidylate kinase [Acinetobacter baumannii (strain AB0057)]
Length=199
Score = 316 bits (809), Expect = 1e-114
Identities = 154/198 (78%), Positives = 179/198 (90%), Gaps = 0/198 (0%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
MFISFEGTEGVGKTTLIRK+++HFE GKQVVLTREPGGTPLAEQIRS+LLAVNH+E MS
Sbjct 1 MFISFEGTEGVGKTTLIRKIHQHFEEQGKQVVLTREPGGTPLAEQIRSMLLAVNHNENMS 60
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
DTELLL+YAARAQHLQQVI+PAL K+VLSDRFTDAS+AYQC GRGLS+DKL LNQ
Sbjct 61 HDTELLLIYAARAQHLQQVILPALESNKIVLSDRFTDASFAYQCSGRGLSQDKLQLLNQN 120
Query 121 FVSHMPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIKR 180
FVS MP++TFWLDAPIELGM+RARERGALDRFEQEK+ FF +VR+GY+ L + PERIKR
Sbjct 121 FVSSMPEVTFWLDAPIELGMNRARERGALDRFEQEKLSFFTKVREGYETLWKAEPERIKR 180
Query 181 LDATQAPEIVFQEALEHI 198
LDATQ+P+ VF++AL+++
Sbjct 181 LDATQSPDQVFEQALQYL 198
>B7GYE0 Thymidylate kinase [Acinetobacter baumannii (strain AB307-0294)]
Length=199
Score = 316 bits (809), Expect = 1e-114
Identities = 154/198 (78%), Positives = 179/198 (90%), Gaps = 0/198 (0%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
MFISFEGTEGVGKTTLIRK+++HFE GKQVVLTREPGGTPLAEQIRS+LLAVNH+E MS
Sbjct 1 MFISFEGTEGVGKTTLIRKIHQHFEEQGKQVVLTREPGGTPLAEQIRSMLLAVNHNENMS 60
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
DTELLL+YAARAQHLQQVI+PAL K+VLSDRFTDAS+AYQC GRGLS+DKL LNQ
Sbjct 61 HDTELLLIYAARAQHLQQVILPALESNKIVLSDRFTDASFAYQCSGRGLSQDKLQLLNQN 120
Query 121 FVSHMPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIKR 180
FVS MP++TFWLDAPIELGM+RARERGALDRFEQEK+ FF +VR+GY+ L + PERIKR
Sbjct 121 FVSSMPEVTFWLDAPIELGMNRARERGALDRFEQEKLSFFTKVREGYETLWKAEPERIKR 180
Query 181 LDATQAPEIVFQEALEHI 198
LDATQ+P+ VF++AL+++
Sbjct 181 LDATQSPDQVFEQALQYL 198
>B0KF60 Thymidylate kinase [Pseudomonas putida (strain GB-1)]
Length=210
Score = 188 bits (477), Expect = 4e-64
Identities = 106/191 (55%), Positives = 131/191 (69%), Gaps = 2/191 (1%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
+FI+ EG EG GK+T L G VVLTREPGGTPLAE++R LLLA + DE M+
Sbjct 4 LFITLEGPEGAGKSTNRDYLAARLREHGLDVVLTREPGGTPLAERVRELLLAPS-DESMA 62
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
+DTELLL++AARAQHL QVI PALA +VL DRFTDA+YAYQ GRGLS +++ TL Q
Sbjct 63 ADTELLLVFAARAQHLAQVIRPALARGAVVLCDRFTDATYAYQGGGRGLSVERIATLEQF 122
Query 121 FVSHM-PDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIK 179
+ PD+T D P+E+G++RA RG LDRFEQE FF+ VRQ Y Q + P+R
Sbjct 123 VQGGLRPDLTLVFDLPVEVGLARAAARGRLDRFEQEGQAFFEAVRQAYLQRAQRAPQRYS 182
Query 180 RLDATQAPEIV 190
LDA Q+ E V
Sbjct 183 LLDAAQSLEAV 193
>A4VMR6 Thymidylate kinase [Stutzerimonas stutzeri (strain A1501)]
Length=210
Score = 187 bits (476), Expect = 6e-64
Identities = 106/188 (56%), Positives = 130/188 (69%), Gaps = 4/188 (2%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
+F++ EG EG GK+T L E A G VVLTREPGGTPLAE+IR LLL DEPM+
Sbjct 4 LFVTLEGPEGAGKSTNREYLAERLRARGLDVVLTREPGGTPLAERIRELLLTPA-DEPMA 62
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
DTELLL++AARAQHL QVI PALA +VL DRFTDA+YAYQ GRGLS +++ L +T
Sbjct 63 VDTELLLVFAARAQHLAQVIRPALARGAVVLCDRFTDATYAYQGGGRGLSLERIAQL-ET 121
Query 121 FVSH--MPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERI 178
FV PD+T D P+++G++RA RG LDRFEQE + FF+ VR Y Q E P R
Sbjct 122 FVQGDLRPDLTLIFDLPVDVGLARAAARGRLDRFEQEGMRFFEAVRSAYLQRAEAAPSRY 181
Query 179 KRLDATQA 186
+ +DA QA
Sbjct 182 RVIDAGQA 189
>B1J4Z5 Thymidylate kinase [Pseudomonas putida (strain W619)]
Length=207
Score = 186 bits (473), Expect = 2e-63
Identities = 108/197 (55%), Positives = 132/197 (67%), Gaps = 3/197 (2%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
MFI+ EG EG GK+T L G VVLTREPGGTPLAE++R LLLA + DE M+
Sbjct 1 MFITLEGPEGAGKSTNRDYLAARLREQGLDVVLTREPGGTPLAEKVRELLLAPS-DEVMA 59
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
+DTELLL++AARAQHL QVI PALA +VL DRFTDA+YAYQ GRGLS +++ L Q
Sbjct 60 ADTELLLVFAARAQHLAQVIRPALARGAVVLCDRFTDATYAYQGGGRGLSVERIAALEQF 119
Query 121 FVSHM-PDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIK 179
+ PD+T D P+E+G++RA RG LDRFEQE FF+ VRQ Y Q P+R
Sbjct 120 VQGELRPDLTLVFDLPVEVGLARAAARGRLDRFEQEGQAFFEAVRQAYLQRARREPQRYD 179
Query 180 RLDATQAPEIVFQEALE 196
LDA Q E V Q A++
Sbjct 180 LLDAAQPLEAV-QRAID 195
>A4XST1 Thymidylate kinase [Pseudomonas mendocina (strain ymp)]
Length=210
Score = 186 bits (471), Expect = 3e-63
Identities = 105/186 (56%), Positives = 128/186 (69%), Gaps = 2/186 (1%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
+FI+ EG EG GK+T L E G VVLTREPGGTPLAE+IR LLL + DEPM+
Sbjct 4 LFITLEGPEGAGKSTNREYLAERLREQGVDVVLTREPGGTPLAERIRELLLDPS-DEPMA 62
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
+DTELLL++AARAQHLQQVI PALA +VL DRFTDA+YAYQ GRGLS +++ L Q
Sbjct 63 ADTELLLVFAARAQHLQQVIRPALAKGCVVLCDRFTDATYAYQGGGRGLSIERIAQLEQF 122
Query 121 FVSHM-PDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIK 179
+ PD+T D P+E+G++RA RG LDRFEQE FF+ VRQ Y Q P+ +
Sbjct 123 VQGELRPDLTLIFDLPVEVGLARAAARGRLDRFEQEGRGFFEAVRQAYLQRAVQAPQHYR 182
Query 180 RLDATQ 185
LDA Q
Sbjct 183 VLDAGQ 188
Score = 18.1 bits (35), Expect = 2.2
Identities = 21/85 (25%), Positives = 34/85 (40%), Gaps = 10/85 (12%)
Query 125 MPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIKRLDAT 184
M + L+ P G S RE A +R ++ V+ G L E E + LD +
Sbjct 1 MTGLFITLEGPEGAGKSTNREYLA-ERLREQGVDVVLTREPGGTPLAERIRELL--LDPS 57
Query 185 QAPE-------IVFQEALEHIQALV 202
P +VF +H+Q ++
Sbjct 58 DEPMAADTELLLVFAARAQHLQQVI 82
>A5WBP5 Thymidylate kinase [Psychrobacter sp. (strain PRwf-1)]
Length=208
Score = 185 bits (470), Expect = 4e-63
Identities = 97/186 (52%), Positives = 125/186 (67%), Gaps = 6/186 (3%)
Query 2 FISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMSS 61
F+SFEGTEGVGKTT I L E +A G + V TREPGG+P AEQ+R LLL ++
Sbjct 6 FVSFEGTEGVGKTTAINGLCERLQAQGIEYVRTREPGGSPFAEQLRELLLDTRTQ--IND 63
Query 62 DTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSK----DKLNTL 117
DTELLLM+AAR+ HL QVI+PAL+ K V+ DRF D++ AYQ GRG K+ L
Sbjct 64 DTELLLMFAARSDHLAQVIMPALSAGKWVICDRFIDSTVAYQGYGRGFGNADMLHKIEAL 123
Query 118 NQTFVSHMPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPER 177
FV +PDIT WLD P+ GM RA +R DRFEQ++++FF RV QG++ + P+R
Sbjct 124 IAGFVPRLPDITLWLDLPVAEGMQRAGKRSVADRFEQQQLDFFDRVYQGFEAQQQAQPQR 183
Query 178 IKRLDA 183
I+R+DA
Sbjct 184 IQRIDA 189
>Q48L36 Thymidylate kinase [Pseudomonas savastanoi pv. phaseolicola
(strain 1448A / Race 6)]
Length=210
Score = 184 bits (467), Expect = 1e-62
Identities = 103/186 (55%), Positives = 128/186 (69%), Gaps = 2/186 (1%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
+FI+ EG EG GK+T L A G QV+LTREPGGTPLAE+IR LLLA + DE MS
Sbjct 4 LFITLEGPEGAGKSTNREYLAAQLRAQGVQVLLTREPGGTPLAERIRELLLAPS-DEAMS 62
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
+DTELLL++AARAQHL +VI PALA ++VL DRFTDA+YAYQ GRGLS+ ++ L +
Sbjct 63 ADTELLLVFAARAQHLAEVIRPALARGEVVLCDRFTDATYAYQGGGRGLSQQRIAVLEEF 122
Query 121 FVSHM-PDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIK 179
+ PD+T D P+E+G+SRA RG LDRFEQE FF VR Y Q + P R +
Sbjct 123 VQGDLRPDLTLVFDLPVEIGLSRAAARGRLDRFEQEGRAFFDAVRSTYLQRAKADPARYR 182
Query 180 RLDATQ 185
+DA Q
Sbjct 183 LVDAAQ 188
>P0A720 Thymidylate kinase [Escherichia coli (strain K12)]
Length=213
Score = 139 bits (349), Expect = 9e-45
Identities = 85/193 (44%), Positives = 114/193 (59%), Gaps = 5/193 (3%)
Query 2 FISFEGTEGVGKTTLIRKLYEHFEASG-KQVVLTREPGGTPLAEQIRSLLLAVNH--DEP 58
+I EG EG GKTT + E E G + +V TREPGGT LAE++RSL+L + DE
Sbjct 5 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLVLDIKSVGDEV 64
Query 59 MSSDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLN 118
++ E+L+ YAAR Q ++ VI PALA+ V+ DR ++ AYQ GRG+ + L TL
Sbjct 65 ITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLR 124
Query 119 QTFVSHM-PDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPER 177
+ PD+T +LD E+G+ RAR RG LDR EQE +FF R R Y +L +
Sbjct 125 DAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLEL-AAQDKS 183
Query 178 IKRLDATQAPEIV 190
I +DATQ E V
Sbjct 184 IHTIDATQPLEAV 196
>O69169 Thymidylate kinase [Yersinia pestis]
Length=212
Score = 137 bits (346), Expect = 3e-44
Identities = 83/191 (43%), Positives = 111/191 (58%), Gaps = 3/191 (2%)
Query 2 FISFEGTEGVGKTTLIRKLYEHFEASG-KQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
FI EG EG GKTT + A G +V TREPGGTPLAE++R L+ E ++
Sbjct 5 FIVIEGLEGAGKTTTRDTVVAVLRAQGINDIVFTREPGGTPLAEKLRDLIKQGIDGEVLT 64
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
E+L++YAAR Q ++ VI PALA V+ DR +S AYQ GRG+ + +L T
Sbjct 65 DKAEVLMLYAARVQLVENVIKPALARGSWVVGDRHDLSSQAYQGGGRGIDSQLMASLRDT 124
Query 121 FVSHM-PDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIK 179
+ PD+T +LD P +G++RAR RG LDR EQE + FF+R R Y +L IK
Sbjct 125 VLGEFRPDLTLYLDLPPAVGLARARARGELDRIEQESLAFFERTRARYLEL-AASDASIK 183
Query 180 RLDATQAPEIV 190
+DA+Q E V
Sbjct 184 TIDASQPIEQV 194
>Q7WSH2 Thymidylate kinase [Onion yellows phytoplasma (strain
OY-M)]
Length=207
Score = 129 bits (325), Expect = 3e-41
Identities = 76/194 (39%), Positives = 122/194 (63%), Gaps = 5/194 (3%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMS 60
MFISFEG EG GKTT R L+E VLT+EPGG E IR++LL ++ + +
Sbjct 1 MFISFEGCEGTGKTTHSRYLFEKLSKK-YSCVLTKEPGGGLFNEVIRNILLHSSNKQ-ID 58
Query 61 SDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQT 120
TE LL A RA+HL ++I+PAL K+V+ DR+ D++ AYQ RGLS+D + +N
Sbjct 59 FHTEALLFAADRAEHLSKLIIPALQQNKIVICDRYLDSTIAYQVYARGLSQDFVLNINNF 118
Query 121 FVSHMPDITFWLDAPIELGMSRARE--RGALDRFEQEKVEFFQRVRQGYQQL-HELYPER 177
++++P+ITF+LD ++G+ R ++ ++ F+ +K+ F ++VR+GY L + +R
Sbjct 119 ALNYIPNITFYLDLDPKIGIQRVKQFRPKEINSFDLQKLSFHKKVRKGYLDLCQKDQQKR 178
Query 178 IKRLDATQAPEIVF 191
I +DA++ E ++
Sbjct 179 IFLIDASKPLENIY 192
>P9WKE1 Thymidylate kinase [Mycobacterium tuberculosis (strain
ATCC 25618 / H37Rv)]
Length=214
Score = 42.4 bits (98), Expect = 2e-08
Identities = 30/103 (29%), Positives = 46/103 (45%), Gaps = 1/103 (1%)
Query 1 MFISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPG-GTPLAEQIRSLLLAVNHDEPM 59
M I+ EG +G GK TL+ KL F A+G+ V P G +A I + L H +
Sbjct 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLA 60
Query 60 SSDTELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAY 102
SS + ++A I +V+ DR+ ++ AY
Sbjct 61 SSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAY 103
>Q0WW55 Thymidylate kinase [Arabidopsis thaliana]
Length=263
Score = 42.4 bits (98), Expect = 2e-08
Identities = 47/193 (24%), Positives = 79/193 (41%), Gaps = 10/193 (5%)
Query 3 ISFEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLAEQIRSLLLAVNHDEPMSSD 62
I EG + GK+T KL G L R P Q+ S L+ ++ D
Sbjct 62 IVLEGLDRSGKSTQCAKLLSFLNGLGHPTELWRFPDRETSVGQMISAYLS---NKSQLDD 118
Query 63 TELLLMYAARAQHLQQVIVPALADEKLVLSDRFTDASYAYQCVGRGLSKDKLNTLNQTFV 122
+ L+++A + ++ L ++ DR++ + A+ +GL + +
Sbjct 119 HTIHLLFSANRWEKRSLMEEKLKTGTTLIVDRYSYSGVAFSSA-KGLDIEWCKAPEIGLL 177
Query 123 SHMPDITFWLDAPIELGMSRARERGALDRFEQEKVEFFQRVRQGYQQLHELYPERIKRLD 182
+ PD +LD E RA ERG E+VEF ++V YQ L + + I D
Sbjct 178 A--PDSVLYLDISPE----RAAERGGYGDERYERVEFQKKVADFYQTLGDSSWKIINASD 231
Query 183 ATQAPEIVFQEAL 195
A + E Q+ +
Sbjct 232 AMEEVEKKIQQVV 244
>P83749 Signal recognition particle receptor FtsY [Thermus aquaticus]
Length=304
Score = 35.4 bits (80), Expect = 5e-06
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query 7 GTEGVGKTTLIRKLYEHFEASGKQVVLT-----REPGGTPLAEQIRSLLLAVNHDEPMSS 61
G GVGKTT I KL +++ GK+V+ R GGT L+E + L + V P +
Sbjct 109 GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQG-PEGT 167
Query 62 DTELLLMYAARA 73
D L A +A
Sbjct 168 DPAALAYDAVQA 179
>D4GYW6 Signal recognition particle receptor FtsY [Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742
/ NCIMB 2012 / VKM B-1768 / DS2)]
Length=456
Score = 33.9 bits (76), Expect = 2e-05
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 5/46 (11%)
Query 5 FEGTEGVGKTTLIRKLYEHFEASGKQVVLTREPGGTPLA---EQIR 47
F G GVGKTT I KL ++FE G VL G T A EQIR
Sbjct 263 FTGINGVGKTTTIAKLAKYFEKQGYSTVLAN--GDTYRAGANEQIR 306
Score = 17.7 bits (34), Expect = 3.2
Identities = 5/11 (45%), Positives = 8/11 (73%), Gaps = 0/11 (0%)
Query 36 EPGGTPLAEQI 46
EP G P A+++
Sbjct 125 EPSGEPTADEV 135
Lambda K H a alpha
0.323 0.137 0.394 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 599400
Database: 0be24a4ded9e5fafa88ed2ab0a5188f3.SwissProt.fasta
Posted date: May 20, 2024 12:39 PM
Number of letters in database: 4,520
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
