BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: bb65803b5b898d17beace6d30efdba8b.SwissProt.fasta
24 sequences; 8,101 total letters
Query= ACIAD2615
Length=335
Score E
Sequences producing significant alignments: (Bits) Value
Q6F991 Holliday junction branch migration complex subunit RuvB [A... 655 0.0
A3M7W1 Holliday junction branch migration complex subunit RuvB [A... 630 0.0
B0VT89 Holliday junction branch migration complex subunit RuvB [A... 630 0.0
B2HWT3 Holliday junction branch migration complex subunit RuvB [A... 630 0.0
B7I5A9 Holliday junction branch migration complex subunit RuvB [A... 630 0.0
B7GYB5 Holliday junction branch migration complex subunit RuvB [A... 630 0.0
A5WFF6 Holliday junction branch migration complex subunit RuvB [P... 521 0.0
Q1QCY5 Holliday junction branch migration complex subunit RuvB [P... 508 0.0
Q4FTT9 Holliday junction branch migration complex subunit RuvB [P... 506 0.0
B3PB59 Holliday junction branch migration complex subunit RuvB [C... 498 0.0
Q21HN6 Holliday junction branch migration complex subunit RuvB [S... 492 1e-179
Q0VRJ7 Holliday junction branch migration complex subunit RuvB [A... 490 8e-179
Q2SCL3 Holliday junction branch migration complex subunit RuvB [H... 486 1e-177
A1U1B9 Holliday junction branch migration complex subunit RuvB [M... 485 5e-177
Q51426 Holliday junction branch migration complex subunit RuvB [P... 478 6e-174
P0A812 Holliday junction branch migration complex subunit RuvB [E... 469 1e-170
B7USN7 Holliday junction branch migration complex subunit RuvB [E... 468 3e-170
Q93LP2 Holliday junction branch migration complex subunit RuvB [B... 442 9e-160
Q2K4J8 Holliday junction branch migration complex subunit RuvB [R... 407 3e-146
O32055 Holliday junction branch migration complex subunit RuvB [B... 392 2e-140
Q9X719 Holliday junction branch migration complex subunit RuvB [D... 369 4e-131
Q57396 Holliday junction branch migration complex subunit RuvB [S... 360 2e-127
Q5SL87 Holliday junction branch migration complex subunit RuvB [T... 357 1e-126
Q56214 Holliday junction branch migration complex subunit RuvB [T... 353 3e-125
>Q6F991 Holliday junction branch migration complex subunit RuvB
[Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=334
Score = 655 bits (1691), Expect = 0.0
Identities = 334/334 (100%), Positives = 334/334 (100%), Gaps = 0/334 (0%)
Query 1 MHDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
MHDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP
Sbjct 1 MHDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
Query 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE
Sbjct 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
Query 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF
Sbjct 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
Query 181 YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT 240
YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT
Sbjct 181 YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT 240
Query 241 HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP
Sbjct 241 HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
Query 301 YLIQQGYVMRTARGRIATNMAYLQFGLTPPEPKN 334
YLIQQGYVMRTARGRIATNMAYLQFGLTPPEPKN
Sbjct 301 YLIQQGYVMRTARGRIATNMAYLQFGLTPPEPKN 334
>A3M7W1 Holliday junction branch migration complex subunit RuvB
[Acinetobacter baumannii (strain ATCC 17978 / CIP 53.77 /
LMG 1025 / NCDC KC755 / 5377)]
Length=334
Score = 630 bits (1626), Expect = 0.0
Identities = 321/334 (96%), Positives = 327/334 (98%), Gaps = 0/334 (0%)
Query 1 MHDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
M DRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP
Sbjct 1 MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
Query 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE
Sbjct 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
Query 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF
Sbjct 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
Query 181 YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT 240
YSVEDLTHIV+RSANLM+VP+T GA EVARRSRGTPRIANRLLRRVRDYAQVKGTGEV
Sbjct 181 YSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN 240
Query 241 HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
H+MAQRALDMLNVDK GLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP
Sbjct 241 HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
Query 301 YLIQQGYVMRTARGRIATNMAYLQFGLTPPEPKN 334
YLIQQGYVMRTARGRIATN +YLQFG+TPPEPKN
Sbjct 301 YLIQQGYVMRTARGRIATNQSYLQFGMTPPEPKN 334
>B0VT89 Holliday junction branch migration complex subunit RuvB
[Acinetobacter baumannii (strain SDF)]
Length=334
Score = 630 bits (1626), Expect = 0.0
Identities = 321/334 (96%), Positives = 327/334 (98%), Gaps = 0/334 (0%)
Query 1 MHDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
M DRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP
Sbjct 1 MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
Query 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE
Sbjct 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
Query 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF
Sbjct 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
Query 181 YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT 240
YSVEDLTHIV+RSANLM+VP+T GA EVARRSRGTPRIANRLLRRVRDYAQVKGTGEV
Sbjct 181 YSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN 240
Query 241 HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
H+MAQRALDMLNVDK GLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP
Sbjct 241 HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
Query 301 YLIQQGYVMRTARGRIATNMAYLQFGLTPPEPKN 334
YLIQQGYVMRTARGRIATN +YLQFG+TPPEPKN
Sbjct 301 YLIQQGYVMRTARGRIATNQSYLQFGMTPPEPKN 334
>B2HWT3 Holliday junction branch migration complex subunit RuvB
[Acinetobacter baumannii (strain ACICU)]
Length=334
Score = 630 bits (1626), Expect = 0.0
Identities = 321/334 (96%), Positives = 327/334 (98%), Gaps = 0/334 (0%)
Query 1 MHDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
M DRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP
Sbjct 1 MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
Query 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE
Sbjct 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
Query 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF
Sbjct 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
Query 181 YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT 240
YSVEDLTHIV+RSANLM+VP+T GA EVARRSRGTPRIANRLLRRVRDYAQVKGTGEV
Sbjct 181 YSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN 240
Query 241 HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
H+MAQRALDMLNVDK GLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP
Sbjct 241 HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
Query 301 YLIQQGYVMRTARGRIATNMAYLQFGLTPPEPKN 334
YLIQQGYVMRTARGRIATN +YLQFG+TPPEPKN
Sbjct 301 YLIQQGYVMRTARGRIATNQSYLQFGMTPPEPKN 334
>B7I5A9 Holliday junction branch migration complex subunit RuvB
[Acinetobacter baumannii (strain AB0057)]
Length=334
Score = 630 bits (1626), Expect = 0.0
Identities = 321/334 (96%), Positives = 327/334 (98%), Gaps = 0/334 (0%)
Query 1 MHDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
M DRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP
Sbjct 1 MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
Query 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE
Sbjct 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
Query 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF
Sbjct 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
Query 181 YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT 240
YSVEDLTHIV+RSANLM+VP+T GA EVARRSRGTPRIANRLLRRVRDYAQVKGTGEV
Sbjct 181 YSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN 240
Query 241 HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
H+MAQRALDMLNVDK GLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP
Sbjct 241 HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
Query 301 YLIQQGYVMRTARGRIATNMAYLQFGLTPPEPKN 334
YLIQQGYVMRTARGRIATN +YLQFG+TPPEPKN
Sbjct 301 YLIQQGYVMRTARGRIATNQSYLQFGMTPPEPKN 334
>B7GYB5 Holliday junction branch migration complex subunit RuvB
[Acinetobacter baumannii (strain AB307-0294)]
Length=334
Score = 630 bits (1626), Expect = 0.0
Identities = 321/334 (96%), Positives = 327/334 (98%), Gaps = 0/334 (0%)
Query 1 MHDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
M DRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP
Sbjct 1 MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
Query 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE
Sbjct 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
Query 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF
Sbjct 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
Query 181 YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT 240
YSVEDLTHIV+RSANLM+VP+T GA EVARRSRGTPRIANRLLRRVRDYAQVKGTGEV
Sbjct 181 YSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN 240
Query 241 HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
H+MAQRALDMLNVDK GLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP
Sbjct 241 HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
Query 301 YLIQQGYVMRTARGRIATNMAYLQFGLTPPEPKN 334
YLIQQGYVMRTARGRIATN +YLQFG+TPPEPKN
Sbjct 301 YLIQQGYVMRTARGRIATNQSYLQFGMTPPEPKN 334
>A5WFF6 Holliday junction branch migration complex subunit RuvB
[Psychrobacter sp. (strain PRwf-1)]
Length=325
Score = 521 bits (1341), Expect = 0.0
Identities = 268/321 (83%), Positives = 289/321 (90%), Gaps = 0/321 (0%)
Query 1 MHDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
M +RLI+ E+ +D D IRP++LA+YIGQPVVREQME+FI AAR R EALDHTLIFGP
Sbjct 1 MENRLINPVERVDDSVDNNIRPSTLAEYIGQPVVREQMEVFIEAARRRNEALDHTLIFGP 60
Query 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
PGLGKTTLANIIAREMGGNL+STSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE
Sbjct 61 PGLGKTTLANIIAREMGGNLRSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
Query 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
EILYPAMED+QLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF
Sbjct 121 EILYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
Query 181 YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT 240
Y++EDLT IV+RSA LMNV MT GA EVARRSRGTPRIANRLLRRVRDYAQVK GEVT
Sbjct 181 YNIEDLTTIVSRSARLMNVVMTPEGAVEVARRSRGTPRIANRLLRRVRDYAQVKSNGEVT 240
Query 241 HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
++A ALDML VD+ GLD LDRRY+ M+ RFD GPAGVEA+AAAMAED GTLEDVIEP
Sbjct 241 GEIADSALDMLAVDRRGLDHLDRRYIEMVHARFDNGPAGVEAIAAAMAEDRGTLEDVIEP 300
Query 301 YLIQQGYVMRTARGRIATNMA 321
YLIQQGYV+RTARGR+ T MA
Sbjct 301 YLIQQGYVLRTARGRVLTQMA 321
>Q1QCY5 Holliday junction branch migration complex subunit RuvB
[Psychrobacter cryohalolentis (strain ATCC BAA-1226 / DSM
17306 / VKM B-2378 / K5)]
Length=331
Score = 508 bits (1307), Expect = 0.0
Identities = 262/321 (82%), Positives = 283/321 (88%), Gaps = 0/321 (0%)
Query 1 MHDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
M DRLI+ E D D IRP LA+YIGQPVVREQME+FI AAR R EALDHTLIFGP
Sbjct 6 MQDRLINPLEGAADAPDANIRPALLAEYIGQPVVREQMEVFIQAARARDEALDHTLIFGP 65
Query 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
PGLGKTTLANIIAREMGGNL+STSGPVLERAGDLAAMLTNLE GDVLFIDEIHRLSPVIE
Sbjct 66 PGLGKTTLANIIAREMGGNLRSTSGPVLERAGDLAAMLTNLEAGDVLFIDEIHRLSPVIE 125
Query 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
EILYPAMED+QLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF
Sbjct 126 EILYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 185
Query 181 YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT 240
Y++ DLT IV+R+A LM VPM+ GA E+ARR+RGTPRIANRLLRRVRDYAQV+G G +
Sbjct 186 YNIADLTTIVSRAARLMRVPMSEDGAVEIARRARGTPRIANRLLRRVRDYAQVRGDGSIN 245
Query 241 HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
+A ALDML VD+ GLD LDRRY+ +L ERFDGGPAGVEA+AAAMAED GTLEDVIEP
Sbjct 246 GAIAGSALDMLAVDRRGLDHLDRRYIEILHERFDGGPAGVEAVAAAMAEDRGTLEDVIEP 305
Query 301 YLIQQGYVMRTARGRIATNMA 321
YLIQQGYV+RTARGR+ T MA
Sbjct 306 YLIQQGYVLRTARGRVLTQMA 326
>Q4FTT9 Holliday junction branch migration complex subunit RuvB
[Psychrobacter arcticus (strain DSM 17307 / VKM B-2377 / 273-4)]
Length=331
Score = 506 bits (1303), Expect = 0.0
Identities = 261/321 (81%), Positives = 283/321 (88%), Gaps = 0/321 (0%)
Query 1 MHDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
M DRLI+ E D D IRP LA+YIGQPVVREQME+FI AAR R EALDHTLIFGP
Sbjct 6 MQDRLINPLEGAADAPDANIRPALLAEYIGQPVVREQMEVFIQAARARDEALDHTLIFGP 65
Query 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
PGLGKTTLANIIAREMGGNL+STSGPVLERAGDLAAMLTNLE GDVLFIDEIHRLSPVIE
Sbjct 66 PGLGKTTLANIIAREMGGNLRSTSGPVLERAGDLAAMLTNLEAGDVLFIDEIHRLSPVIE 125
Query 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
EILYPAMED+QLDIMIGEGPAARSIKL+LPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF
Sbjct 126 EILYPAMEDFQLDIMIGEGPAARSIKLELPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 185
Query 181 YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT 240
Y++ DLT IV+R+A LM VPM+ GA E+ARR+RGTPRIANRLLRRVRDYAQV+G G +
Sbjct 186 YNIADLTTIVSRAARLMRVPMSEDGAVEIARRARGTPRIANRLLRRVRDYAQVRGDGSIN 245
Query 241 HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
+A ALDML VD+ GLD LDRRY+ +L ERFDGGPAGVEA+AAAMAED GTLEDVIEP
Sbjct 246 GAIAGSALDMLAVDRRGLDHLDRRYIEILHERFDGGPAGVEAVAAAMAEDRGTLEDVIEP 305
Query 301 YLIQQGYVMRTARGRIATNMA 321
YLIQQGYV+RTARGR+ T MA
Sbjct 306 YLIQQGYVLRTARGRVLTQMA 326
>B3PB59 Holliday junction branch migration complex subunit RuvB
[Cellvibrio japonicus (strain Ueda107)]
Length=346
Score = 498 bits (1281), Expect = 0.0
Identities = 252/330 (76%), Positives = 286/330 (87%), Gaps = 1/330 (0%)
Query 3 DRLISGTEKP-EDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61
DRLI+ T K ED DRA+RP LADY+GQP VREQMEIFI AA+ R EALDHTL+FGPP
Sbjct 5 DRLIAPTAKEREDQLDRAVRPKVLADYVGQPAVREQMEIFICAAKKRREALDHTLVFGPP 64
Query 62 GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121
GLGKTTLANIIA EMG +LKSTSGPVLE+AGDLAAMLTNLE GDVLFIDEIHRLSPV+EE
Sbjct 65 GLGKTTLANIIANEMGVSLKSTSGPVLEKAGDLAAMLTNLEAGDVLFIDEIHRLSPVVEE 124
Query 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181
ILYPAMED+QLDIMIGEGPAARSIKLDLPPFTLV ATTRAGLLTSPLRDRFGIVQRLEFY
Sbjct 125 ILYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFY 184
Query 182 SVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTH 241
+V+DLTHIV RSA L+ V M GAAE+A+RSRGTPRIANRLLRRVRD+A+VKG G +T
Sbjct 185 NVKDLTHIVARSAALLGVSMEELGAAEIAKRSRGTPRIANRLLRRVRDFAEVKGDGRITS 244
Query 242 DMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPY 301
++A +AL+MLNVD+ G D +DRR L ++ FDGGP GVE+LAAA++ED GT+EDVIEPY
Sbjct 245 ELADKALNMLNVDERGFDHMDRRLLLAMINNFDGGPVGVESLAAAISEDRGTIEDVIEPY 304
Query 302 LIQQGYVMRTARGRIATNMAYLQFGLTPPE 331
LIQQG++ RT RGR+ T AYL FGL+ P+
Sbjct 305 LIQQGFMARTPRGRVLTTNAYLHFGLSMPK 334
>Q21HN6 Holliday junction branch migration complex subunit RuvB
[Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM
17024)]
Length=344
Score = 492 bits (1267), Expect = 1e-179
Identities = 247/329 (75%), Positives = 285/329 (87%), Gaps = 1/329 (0%)
Query 3 DRLISGTEKP-EDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61
DR+I K E+ DRA+RP SL +YIGQPVVREQMEIFIGAA+ RG++LDHTL+FGPP
Sbjct 5 DRIIDANAKSREEQIDRAVRPKSLKEYIGQPVVREQMEIFIGAAQARGDSLDHTLVFGPP 64
Query 62 GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121
GLGKTTLANIIA EMG +LKSTSGPVLE+AGDLAA++TNLE GDVLFIDEIHRLSPV+EE
Sbjct 65 GLGKTTLANIIAAEMGADLKSTSGPVLEKAGDLAALMTNLEPGDVLFIDEIHRLSPVVEE 124
Query 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181
ILYPAMED+QLDIMIGEGPAARSIKL+LPPFTLV ATTRAGLLTSPLRDRFGIVQRLEFY
Sbjct 125 ILYPAMEDFQLDIMIGEGPAARSIKLELPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFY 184
Query 182 SVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTH 241
++EDLTHIV RSA+LM V M + GA EVA+RSRGTPRIANRLLRRVRDYA+VK G VT
Sbjct 185 NIEDLTHIVERSASLMGVAMDTPGAREVAKRSRGTPRIANRLLRRVRDYAEVKSDGTVTA 244
Query 242 DMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPY 301
+A AL+MLNVD+ G D +DRR L L+E+F GGP GV++LAAA++E+ T+EDV+EPY
Sbjct 245 QIADLALNMLNVDEHGFDHMDRRLLLTLIEKFGGGPVGVDSLAAAISEERDTIEDVLEPY 304
Query 302 LIQQGYVMRTARGRIATNMAYLQFGLTPP 330
LIQQG++MRT RGR+AT +AY FGL P
Sbjct 305 LIQQGFIMRTPRGRMATQLAYQHFGLNVP 333
>Q0VRJ7 Holliday junction branch migration complex subunit RuvB
[Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 /
NCIMB 13689 / SK2)]
Length=342
Score = 490 bits (1261), Expect = 8e-179
Identities = 245/318 (77%), Positives = 280/318 (88%), Gaps = 0/318 (0%)
Query 13 EDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANII 72
E+ DRAIRP SLADY GQP V E+MEIFI AARGR EALDHTLIFGPPGLGKTTLA+II
Sbjct 16 EEQQDRAIRPASLADYHGQPKVSERMEIFIDAARGRNEALDHTLIFGPPGLGKTTLAHII 75
Query 73 AREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQL 132
AREMG +LKSTSGPVLE+AGDLAA+LTNLEEGDVLF+DEIHRLSPV+EEILYPAMEDYQL
Sbjct 76 AREMGCDLKSTSGPVLEKAGDLAAILTNLEEGDVLFVDEIHRLSPVVEEILYPAMEDYQL 135
Query 133 DIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYSVEDLTHIVTR 192
DIMIGEGPAARSIKLDLPPFTLV ATTRAGLLT+PLRDRFGIVQRLEFYSV+DL+ IV+R
Sbjct 136 DIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTAPLRDRFGIVQRLEFYSVDDLSGIVSR 195
Query 193 SANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTHDMAQRALDMLN 252
+ +++ +P+ + GA EVARR+RGTPRIANRLLRRVRDYA+VKG G +T ++AQRALDML
Sbjct 196 ACDILAIPIEAAGAMEVARRARGTPRIANRLLRRVRDYAEVKGDGRITEEIAQRALDMLE 255
Query 253 VDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTA 312
VD GLD DRR L M++ +FDGGP G+E+LAAA+ EDSGTLE+V+EPYLIQQG++ RT
Sbjct 256 VDSCGLDGTDRRLLDMIMHKFDGGPVGLESLAAALNEDSGTLEEVVEPYLIQQGFIQRTP 315
Query 313 RGRIATNMAYLQFGLTPP 330
RGR TN A+ FGL P
Sbjct 316 RGRAVTNHAWRHFGLQRP 333
>Q2SCL3 Holliday junction branch migration complex subunit RuvB
[Hahella chejuensis (strain KCTC 2396)]
Length=334
Score = 486 bits (1252), Expect = 1e-177
Identities = 248/330 (75%), Positives = 280/330 (85%), Gaps = 1/330 (0%)
Query 3 DRLIS-GTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61
DR+IS ED DRAIRP L DY+GQP VREQMEIFI AARGR EALDHTLIFGPP
Sbjct 5 DRIISPNATLQEDSQDRAIRPKRLEDYVGQPQVREQMEIFINAARGRQEALDHTLIFGPP 64
Query 62 GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121
GLGKTTLANIIA EM ++K+TSGPVLE+AGDLAA+LTNLE DVLFIDEIHRLS +EE
Sbjct 65 GLGKTTLANIIANEMDVSIKTTSGPVLEKAGDLAALLTNLEPKDVLFIDEIHRLSAAVEE 124
Query 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181
+LYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLV ATTRAGLLTSPLRDRFGIVQRLEFY
Sbjct 125 VLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFY 184
Query 182 SVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTH 241
SVEDL HIV RSA+L+ V + GA E+ARRSRGTPRIANRLLRRVRDYA+VK G +T+
Sbjct 185 SVEDLRHIVARSASLLGVSIDDGGAHEIARRSRGTPRIANRLLRRVRDYAEVKADGAITN 244
Query 242 DMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPY 301
++A +AL+MLNVD G D +DRR L ++E+FDGGP GVE+LAAA+ E+ GT+EDV+EPY
Sbjct 245 EVADKALNMLNVDLHGFDHMDRRLLLAVMEKFDGGPVGVESLAAAIGEEKGTIEDVVEPY 304
Query 302 LIQQGYVMRTARGRIATNMAYLQFGLTPPE 331
LIQQG++MRT RGR+AT AY FGLT PE
Sbjct 305 LIQQGFLMRTPRGRVATQAAYNHFGLTMPE 334
>A1U1B9 Holliday junction branch migration complex subunit RuvB
[Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8)]
Length=343
Score = 485 bits (1249), Expect = 5e-177
Identities = 243/329 (74%), Positives = 283/329 (86%), Gaps = 1/329 (0%)
Query 3 DRLISGTE-KPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61
DRLIS + E+ DRAIRPT L++Y+GQP VREQMEIFI AARGR EALDH LIFGPP
Sbjct 5 DRLISAKAGEYEEVHDRAIRPTLLSEYVGQPTVREQMEIFISAARGRQEALDHVLIFGPP 64
Query 62 GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121
GLGKTTLANIIA EMG ++K+TSGPVLE+AGDLAAMLTNLEEGDVLFIDEIHRLS +EE
Sbjct 65 GLGKTTLANIIANEMGVSIKTTSGPVLEKAGDLAAMLTNLEEGDVLFIDEIHRLSAAVEE 124
Query 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181
+LYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLV ATTRAGLLTSPLRDRFGIVQRLEFY
Sbjct 125 VLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGLLTSPLRDRFGIVQRLEFY 184
Query 182 SVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTH 241
+ +DLTHI+TRSA L +V + GA E+ARRSRGTPRIANRLLRRVRD+A+V+ G +T
Sbjct 185 NHQDLTHIITRSARLSSVEIDEAGAFEIARRSRGTPRIANRLLRRVRDFAEVRSNGHITA 244
Query 242 DMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPY 301
D+A +AL+ML VD G D +DRR L ++E+FDGGP GVE+LAAA++E+ GT+EDV+EP+
Sbjct 245 DIADQALNMLKVDSQGFDHMDRRLLLAMIEKFDGGPVGVESLAAAISEERGTIEDVLEPF 304
Query 302 LIQQGYVMRTARGRIATNMAYLQFGLTPP 330
LIQQGY++RT RGR+ T+ AY FG+ PP
Sbjct 305 LIQQGYMVRTPRGRMVTSNAYQHFGVVPP 333
>Q51426 Holliday junction branch migration complex subunit RuvB
[Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP
104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=352
Score = 478 bits (1230), Expect = 6e-174
Identities = 237/331 (72%), Positives = 284/331 (86%), Gaps = 2/331 (1%)
Query 3 DRLISGTEKPE--DHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
DRLIS E + DRAIRP LADYIGQP VREQME+FI AARGR EALDHTLIFGP
Sbjct 5 DRLISAVSGRERDEQLDRAIRPLKLADYIGQPSVREQMELFIHAARGRQEALDHTLIFGP 64
Query 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
PGLGKTTLANIIA+EMG ++KSTSGPVLER GDLAA+LTNLE GDVLF+DEIHRLSP++E
Sbjct 65 PGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEIHRLSPIVE 124
Query 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
E+LYPAMED+QLDIMIGEGPAARSIKLDLPPFTLV ATTRAG+LT+PLRDRFGIVQRLEF
Sbjct 125 EVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEF 184
Query 181 YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT 240
Y+VEDL IV+RSA ++ + + GAAE+A+R+RGTPRIANRLLRRVRD+A+V+G G++T
Sbjct 185 YNVEDLATIVSRSAGILGLEIEPQGAAEIAKRARGTPRIANRLLRRVRDFAEVRGQGDIT 244
Query 241 HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
+A +AL++L+VD+ G D LDRR L ++++FDGGP G++ LAAA++E+ T+EDV+EP
Sbjct 245 RVIADKALNLLDVDERGFDHLDRRLLLTMIDKFDGGPVGIDNLAAALSEERHTIEDVLEP 304
Query 301 YLIQQGYVMRTARGRIATNMAYLQFGLTPPE 331
YLIQQGY+MRT RGR+ T AYL FGL P+
Sbjct 305 YLIQQGYIMRTPRGRVVTRHAYLHFGLNIPK 335
>P0A812 Holliday junction branch migration complex subunit RuvB
[Escherichia coli (strain K12)]
Length=336
Score = 469 bits (1207), Expect = 1e-170
Identities = 237/330 (72%), Positives = 278/330 (84%), Gaps = 1/330 (0%)
Query 3 DRLIS-GTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61
DRLIS GT PED DRAIRP L +Y+GQP VR QMEIFI AA+ RG+ALDH LIFGPP
Sbjct 5 DRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64
Query 62 GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121
GLGKTTLANI+A EMG NL++TSGPVLE+AGDLAAMLTNLE DVLFIDEIHRLSPV+EE
Sbjct 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124
Query 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181
+LYPAMEDYQLDIMIGEGPAARSIK+DLPPFTL+ ATTRAG LTSPLRDRFGIVQRLEFY
Sbjct 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184
Query 182 SVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTH 241
V DL +IV+RSA M + M+ GA EVARR+RGTPRIANRLLRRVRD+A+VK G ++
Sbjct 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244
Query 242 DMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPY 301
D+A +ALDMLNVD +G D +DR+ L ++++F GGP G++ LAAA+ E+ T+EDV+EPY
Sbjct 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304
Query 302 LIQQGYVMRTARGRIATNMAYLQFGLTPPE 331
LIQQG++ RT RGR+AT A+ FG+TPPE
Sbjct 305 LIQQGFLQRTPRGRMATTRAWNHFGITPPE 334
>B7USN7 Holliday junction branch migration complex subunit RuvB
[Escherichia coli O127:H6 (strain E2348/69 / EPEC)]
Length=336
Score = 468 bits (1204), Expect = 3e-170
Identities = 237/330 (72%), Positives = 278/330 (84%), Gaps = 1/330 (0%)
Query 3 DRLIS-GTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPP 61
DRLIS GT PED DRAIRP L +Y+GQP VR QMEIFI AA+ RG+ALDH LIFGPP
Sbjct 5 DRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPP 64
Query 62 GLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEE 121
GLGKTTLANI+A EMG NL++TSGPVLE+AGDLAAMLTNLE DVLFIDEIHRLSPV+EE
Sbjct 65 GLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEE 124
Query 122 ILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFY 181
+LYPAMEDYQLDIMIGEGPAARSIK+DLPPFTL+ ATTRAG LTSPLRDRFGIVQRLEFY
Sbjct 125 VLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFY 184
Query 182 SVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTH 241
V DL +IV+RSA M + M+ GA EVARR+RGTPRIANRLLRRVRD+A+VK G ++
Sbjct 185 QVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISA 244
Query 242 DMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPY 301
D+A +ALDMLNVD +G D +DR+ L ++++F GGP G++ LAAA+ E+ T+EDV+EPY
Sbjct 245 DIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPY 304
Query 302 LIQQGYVMRTARGRIATNMAYLQFGLTPPE 331
LIQQG++ RT RGR+AT A+ FG+TPPE
Sbjct 305 LIQQGFLQRTPRGRMATVRAWNHFGITPPE 334
>Q93LP2 Holliday junction branch migration complex subunit RuvB
[Burkholderia cepacia]
Length=355
Score = 442 bits (1137), Expect = 9e-160
Identities = 222/330 (67%), Positives = 266/330 (81%), Gaps = 2/330 (1%)
Query 3 DRLISGT--EKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGP 60
+R+I+ T E+ F+RA+RP L DY+GQ VR Q+EIFI AA+ R E LDH L+FGP
Sbjct 10 ERIIAATPASSHEEVFERALRPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGP 69
Query 61 PGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIE 120
PGLGKTTLA+IIAREMG NL+ TSGPVLERAGDLAA+LTNLE DVLFIDEIHRLSPV+E
Sbjct 70 PGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFIDEIHRLSPVVE 129
Query 121 EILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEF 180
EILYPA+EDYQ+DIMIGEGPAARS+KLDL PFTLV ATTRAG+LT+PLRDRFGIV RLEF
Sbjct 130 EILYPALEDYQIDIMIGEGPAARSVKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEF 189
Query 181 YSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVT 240
Y E L+ IV RSA L+N + GA E+A+RSRGTPRIANRLLRRVRDYA+VK G++T
Sbjct 190 YDAEQLSRIVRRSAALLNAQIDPNGALEIAKRSRGTPRIANRLLRRVRDYAEVKADGQIT 249
Query 241 HDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEP 300
+A AL ML+VD G D +DR+ L +L +FDGGP G++ LAAA+ E+ T+EDV+EP
Sbjct 250 AAVADAALAMLDVDPVGFDLMDRKLLEAILHKFDGGPVGIDNLAAAIGEERDTIEDVLEP 309
Query 301 YLIQQGYVMRTARGRIATNMAYLQFGLTPP 330
YLIQQG++ RT RGR+AT + Y FGL+ P
Sbjct 310 YLIQQGFLQRTPRGRVATLLTYRHFGLSAP 339
>Q2K4J8 Holliday junction branch migration complex subunit RuvB
[Rhizobium etli (strain CFN 42 / ATCC 51251)]
Length=346
Score = 407 bits (1047), Expect = 3e-146
Identities = 204/328 (62%), Positives = 253/328 (77%), Gaps = 1/328 (0%)
Query 4 RLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGL 63
RLIS ++ ED D +RP SL ++ GQ R +++FI AA+ RGEALDH L GPPGL
Sbjct 6 RLISPEKRGED-LDITLRPQSLDEFTGQAEARANLKVFIEAAKNRGEALDHVLFVGPPGL 64
Query 64 GKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEIL 123
GKTTLA I+A+E+G N +STSGPV+ +AGDLAA+LTNLEE DVLFIDEIHRL+P +EEIL
Sbjct 65 GKTTLAQIMAKELGVNFRSTSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLNPAVEEIL 124
Query 124 YPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYSV 183
YPAMEDYQLD++IGEGPAARS+K+DL FTLVAATTR GLLT+PLRDRFGI RL FY+V
Sbjct 125 YPAMEDYQLDLIIGEGPAARSVKIDLSKFTLVAATTRLGLLTTPLRDRFGIPVRLTFYTV 184
Query 184 EDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTHDM 243
E+L IV R A LMN+PMT GA E+ARR+RGTPRIA RLLRRVRD+A+V VT ++
Sbjct 185 EELELIVRRGARLMNLPMTEEGAREIARRARGTPRIAGRLLRRVRDFAEVARAEAVTREI 244
Query 244 AQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLI 303
A AL L VD G D LD+RYL+M+ F GGP G+E +AA ++E +ED+IEPY+I
Sbjct 245 ADEALTRLLVDNVGFDQLDKRYLNMIAVNFGGGPVGIETIAAGLSEPRDAIEDIIEPYMI 304
Query 304 QQGYVMRTARGRIATNMAYLQFGLTPPE 331
QQG++ RT RGR+ T +A+ G+ PP+
Sbjct 305 QQGFIQRTPRGRVLTAIAWKHLGMQPPK 332
>O32055 Holliday junction branch migration complex subunit RuvB
[Bacillus subtilis (strain 168)]
Length=334
Score = 392 bits (1007), Expect = 2e-140
Identities = 192/331 (58%), Positives = 254/331 (77%), Gaps = 1/331 (0%)
Query 1 MHDRLISG-TEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFG 59
M +RL+S + E ++++RP +LA YIGQ V+E + +FI AA+ R E LDH L++G
Sbjct 1 MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYG 60
Query 60 PPGLGKTTLANIIAREMGGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVI 119
PPGLGKTTLA+I+A EMG L++TSGP +ER GDLAA+LT LE GDVLFIDEIHRL I
Sbjct 61 PPGLGKTTLASIVANEMGVELRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSI 120
Query 120 EEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLE 179
EE+LYPAMED+ LDI+IG+GP+ARS++LDLPPFTLV ATTR GLLT+PLRDRFG++ RLE
Sbjct 121 EEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATTRVGLLTAPLRDRFGVMSRLE 180
Query 180 FYSVEDLTHIVTRSANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEV 239
+Y+ E+L IVTR+A++ V + A E+ARRSRGTPR+ANRLLRRVRD+AQV G +
Sbjct 181 YYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI 240
Query 240 THDMAQRALDMLNVDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIE 299
T D++Q AL+ L VD+ GLD +D + L ++E+F+GGP G++ ++A + E+S T+EDV E
Sbjct 241 TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYE 300
Query 300 PYLIQQGYVMRTARGRIATNMAYLQFGLTPP 330
PYL+Q G++ RT RGRI T Y F + P
Sbjct 301 PYLLQIGFIQRTPRGRIVTPAVYHHFQMEAP 331
>Q9X719 Holliday junction branch migration complex subunit RuvB
[Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 /
JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279
/ VKM B-1422 / R1)]
Length=333
Score = 369 bits (946), Expect = 4e-131
Identities = 184/317 (58%), Positives = 239/317 (75%), Gaps = 1/317 (0%)
Query 14 DHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIA 73
++ D A+RP +L +Y+GQ +++++ +++ AARGR EALDHTL+FGPPGLGKTTLA+IIA
Sbjct 5 ENLDAALRPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLFGPPGLGKTTLAHIIA 64
Query 74 REMGGNLKSTSGPVLERAGDLAAMLTN-LEEGDVLFIDEIHRLSPVIEEILYPAMEDYQL 132
E+G N++ TSGP +E+ GDLAA+LTN LEEGDVLFIDEIHRL V EE LYPAMED++L
Sbjct 65 YELGVNIRVTSGPAIEKPGDLAAILTNSLEEGDVLFIDEIHRLGRVAEEHLYPAMEDFKL 124
Query 133 DIMIGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYSVEDLTHIVTR 192
DI++G+GPAAR+I+L LP FTLV ATTR GL+T+P+R RFGI++ LE+Y+ E++ + R
Sbjct 125 DIVLGQGPAARTIELPLPRFTLVGATTRPGLITAPMRSRFGIIEHLEYYTAEEIATNLLR 184
Query 193 SANLMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTHDMAQRALDMLN 252
A L+ + E+ RSRGT RIA RLLRRVRDYA V G + + AQ ALD L
Sbjct 185 DARLLGFGLDEEAGLEIGARSRGTMRIAKRLLRRVRDYADVAGETTIGLERAQSALDKLG 244
Query 253 VDKDGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTA 312
+D GLD D++YL L+ RF GGP GV+ LA A++ED+ TLEDV EPYLIQ G++ RT
Sbjct 245 LDSAGLDDRDKKYLETLIHRFAGGPVGVDTLATAISEDALTLEDVYEPYLIQLGFIKRTP 304
Query 313 RGRIATNMAYLQFGLTP 329
RGR+AT AY GL P
Sbjct 305 RGRVATAHAYDHLGLPP 321
>Q57396 Holliday junction branch migration complex subunit RuvB
[Synechocystis sp. (strain PCC 6803 / Kazusa)]
Length=361
Score = 360 bits (924), Expect = 2e-127
Identities = 181/316 (57%), Positives = 234/316 (74%), Gaps = 0/316 (0%)
Query 17 DRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREM 76
+ ++RP LADYIGQ ++E + I I AA+GR EA+DH L++GPPGLGKTTLA I+A EM
Sbjct 39 EASLRPQRLADYIGQRDLKEVLRIAIQAAQGRQEAIDHLLLYGPPGLGKTTLALILAEEM 98
Query 77 GGNLKSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMI 136
K T+ P LER D+ +L L+ GD+LFIDEIHRL+ + EE+LYPAMED++LDI +
Sbjct 99 QVRCKITAAPALERPRDITGLLLALQPGDILFIDEIHRLNRLTEELLYPAMEDFRLDITM 158
Query 137 GEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYSVEDLTHIVTRSANL 196
G+G +A+ L L FTLV ATT+ G LTSPLRDRFG++QRL FY V++L I+ R+A +
Sbjct 159 GKGQSAKVRSLKLAHFTLVGATTKVGSLTSPLRDRFGLIQRLRFYEVDELQQIILRTAGI 218
Query 197 MNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTHDMAQRALDMLNVDKD 256
++V ++ TGA +A R+RGTPRIANRLL+RVRDYAQVK E+ +A ALD+ VDK
Sbjct 219 LSVSISPTGAEAIAMRARGTPRIANRLLKRVRDYAQVKQQPEIDPALASEALDLYQVDKR 278
Query 257 GLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRI 316
GLD DR L L+E+F GGP G+EA+AAA ED+ T+E+V EPYL+Q GY+ RT+RGRI
Sbjct 279 GLDWTDRLVLQTLIEQFQGGPTGLEAIAAATGEDAKTIEEVYEPYLLQIGYLARTSRGRI 338
Query 317 ATNMAYLQFGLTPPEP 332
AT AY GLTPP P
Sbjct 339 ATTAAYEHLGLTPPTP 354
>Q5SL87 Holliday junction branch migration complex subunit RuvB
[Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)]
Length=324
Score = 357 bits (916), Expect = 1e-126
Identities = 179/315 (57%), Positives = 235/315 (75%), Gaps = 1/315 (0%)
Query 17 DRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREM 76
D A+RP +L +YIGQ +++++ +++ AA+ R E L+H L+FGPPGLGKTTLA++IA E+
Sbjct 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
Query 77 GGNLKSTSGPVLERAGDLAAMLTN-LEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIM 135
G NL+ TSGP +E+ GDLAA+L N LEEGD+LFIDEIHRLS EE LYPAMED+ +DI+
Sbjct 63 GVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIV 122
Query 136 IGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYSVEDLTHIVTRSAN 195
IG+GPAAR+I+L+LP FTL+ ATTR GL+T+PL RFGIV+ LE+Y+ E+L V R A
Sbjct 123 IGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR 182
Query 196 LMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTHDMAQRALDMLNVDK 255
L+ V +T A E+ RRSRGT R+A RL RRVRD+AQV G +T + A AL L +D+
Sbjct 183 LLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDE 242
Query 256 DGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGR 315
GL+ DR L +L+ RF GGP G+ LA A++ED GTLE+V EPYLI+QG + RT RGR
Sbjct 243 LGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGR 302
Query 316 IATNMAYLQFGLTPP 330
+AT +AY G PP
Sbjct 303 VATELAYRHLGYPPP 317
>Q56214 Holliday junction branch migration complex subunit RuvB
[Thermus thermophilus]
Length=324
Score = 353 bits (907), Expect = 3e-125
Identities = 177/315 (56%), Positives = 234/315 (74%), Gaps = 1/315 (0%)
Query 17 DRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREM 76
D A+RP +L +YIGQ +++++ +++ AA+ R E L+H L+FGPPGLGKTTLA++IA E+
Sbjct 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
Query 77 GGNLKSTSGPVLERAGDLAAMLTN-LEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIM 135
G NL+ TSGP +E+ GDLAA+L N LEEGD+LFIDEIHRLS EE LYPAMED+ +DI+
Sbjct 63 GVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIV 122
Query 136 IGEGPAARSIKLDLPPFTLVAATTRAGLLTSPLRDRFGIVQRLEFYSVEDLTHIVTRSAN 195
IG+GPAAR+I+L+LP F L+ ATTR GL+T+PL RFGIV+ LE+Y+ E+L V R A
Sbjct 123 IGQGPAARTIRLELPRFALIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR 182
Query 196 LMNVPMTSTGAAEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVTHDMAQRALDMLNVDK 255
L+ V +T A E+ RRSRGT R+A RL RRVRD+AQV+G +T + A AL L +D+
Sbjct 183 LLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVEGEEVITRERALEALAALGLDE 242
Query 256 DGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGR 315
GL+ DR L +L+ RF GP G+ LA A++ED GTLE+V EPYLI+QG + RT RGR
Sbjct 243 LGLEKRDREILEVLILRFGAGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGR 302
Query 316 IATNMAYLQFGLTPP 330
+AT +AY G PP
Sbjct 303 VATELAYRHLGYPPP 317
Lambda K H a alpha
0.321 0.139 0.396 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1966785
Database: bb65803b5b898d17beace6d30efdba8b.SwissProt.fasta
Posted date: Jun 3, 2024 5:18 PM
Number of letters in database: 8,101
Number of sequences in database: 24
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
