BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: d693c1888cc63d0e14098362a048f7be.SwissProt.fasta
17 sequences; 3,990 total letters
Query= ACIAD2619
Length=233
Score E
Sequences producing significant alignments: (Bits) Value
P50598 Tol-Pal system protein TolQ [Pseudomonas aeruginosa (strai... 192 4e-65
P0ABV1 Tol-Pal system protein TolQ [Shigella flexneri] 186 8e-63
P0ABV0 Tol-Pal system protein TolQ [Escherichia coli O157:H7] 186 8e-63
P0ABU9 Tol-Pal system protein TolQ [Escherichia coli (strain K12)] 186 8e-63
P43768 Tol-Pal system protein TolQ [Haemophilus influenzae (strai... 177 4e-59
P0ABU8 Biopolymer transport protein ExbB [Escherichia coli O157:H7] 114 1e-34
P0ABU7 Biopolymer transport protein ExbB [Escherichia coli (strai... 114 1e-34
Q05605 Biopolymer transport protein ExbB [Pseudomonas putida] 110 3e-32
P0A1H8 Biopolymer transport protein ExbB [Salmonella typhi] 107 5e-32
P0A1H7 Biopolymer transport protein ExbB [Salmonella typhimurium ... 107 5e-32
P64100 Biopolymer transport protein ExbB [Neisseria meningitidis ... 99.4 5e-29
P64099 Biopolymer transport protein ExbB [Neisseria meningitidis ... 99.4 5e-29
P95375 Biopolymer transport protein ExbB [Neisseria meningitidis ... 98.2 1e-28
O06433 Biopolymer transport protein ExbB [Neisseria gonorrhoeae] 97.4 3e-28
P0C7L9 Biopolymer transport protein ExbB [Xanthomonas campestris ... 95.9 2e-27
B0RLE6 Biopolymer transport protein ExbB [Xanthomonas campestris ... 95.9 2e-27
O51808 Biopolymer transport protein ExbB [Haemophilus ducreyi (st... 57.0 8e-14
>P50598 Tol-Pal system protein TolQ [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG
12228 / 1C / PRS 101 / PAO1)]
Length=231
Score = 192 bits (488), Expect = 4e-65
Identities = 105/212 (50%), Positives = 143/212 (67%), Gaps = 2/212 (1%)
Query 14 LILQASPVVQAVMLILLLASIYSWYLIAKLHLSYKKSAQQDEHFQKMFWSGAELNTLYNN 73
LI AS VVQ VML L+ AS+ SW +I + + + + + + F++ FWSG +L+ LY
Sbjct 14 LISNASIVVQLVMLTLVAASVTSWIMIFQRGNAMRAAKKALDAFEERFWSGIDLSKLYRQ 73
Query 74 AQLN-SKRTGLEDIFYHGLGEFFKLKKRQATSTQTI-EGTERILRVGLSRDQSQLEQGLG 131
A N +G+E IF G EF +L+++ + EG R +RV +SR++ +LE L
Sbjct 74 AGSNPDPDSGVEQIFRAGFKEFSRLRQQPGVDPDAVMEGVARAMRVAISREEEKLEASLP 133
Query 132 TLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIATAIGLFAAIPA 191
LA++GS +PYVGLFGTVWGIMN+F GLA V Q TLATVAPGIAEALIATAIGLFAAIPA
Sbjct 134 FLATVGSTSPYVGLFGTVWGIMNSFRGLATVQQATLATVAPGIAEALIATAIGLFAAIPA 193
Query 192 VLAFNHFTSKGEAIYSDRALFAEEMVALLQRQ 223
V+A+N F+++ E + FA+E A+L R+
Sbjct 194 VIAYNRFSARSEMLIGRYYTFADEFQAILHRK 225
>P0ABV1 Tol-Pal system protein TolQ [Shigella flexneri]
Length=230
Score = 186 bits (473), Expect = 8e-63
Identities = 101/220 (46%), Positives = 142/220 (65%), Gaps = 2/220 (1%)
Query 7 SSLHISDLILQASPVVQAVMLILLLASIYSWYLIAKLHLSYKKSAQQDEHFQKMFWSGAE 66
+ ++I DL L+AS +V+ +MLIL+ SI SW +I + +A++ E F+ FWSG E
Sbjct 2 TDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGIE 61
Query 67 LNTLYNNAQ-LNSKRTGLEDIFYHGLGEFFKLKKRQATSTQTI-EGTERILRVGLSRDQS 124
L+ LY +Q TG E IFY G EF +L + + + + + EG R +R+ ++R+
Sbjct 62 LSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNRELE 121
Query 125 QLEQGLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIATAIG 184
LE + L ++GS++PY+GLFGTVWGIM+AFI L AV Q TL VAPGIAEALIATAIG
Sbjct 122 NLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIG 181
Query 185 LFAAIPAVLAFNHFTSKGEAIYSDRALFAEEMVALLQRQS 224
LFAAIPAV+A+N + + + F EE A+L RQ+
Sbjct 182 LFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQA 221
>P0ABV0 Tol-Pal system protein TolQ [Escherichia coli O157:H7]
Length=230
Score = 186 bits (473), Expect = 8e-63
Identities = 101/220 (46%), Positives = 142/220 (65%), Gaps = 2/220 (1%)
Query 7 SSLHISDLILQASPVVQAVMLILLLASIYSWYLIAKLHLSYKKSAQQDEHFQKMFWSGAE 66
+ ++I DL L+AS +V+ +MLIL+ SI SW +I + +A++ E F+ FWSG E
Sbjct 2 TDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGIE 61
Query 67 LNTLYNNAQ-LNSKRTGLEDIFYHGLGEFFKLKKRQATSTQTI-EGTERILRVGLSRDQS 124
L+ LY +Q TG E IFY G EF +L + + + + + EG R +R+ ++R+
Sbjct 62 LSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNRELE 121
Query 125 QLEQGLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIATAIG 184
LE + L ++GS++PY+GLFGTVWGIM+AFI L AV Q TL VAPGIAEALIATAIG
Sbjct 122 NLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIG 181
Query 185 LFAAIPAVLAFNHFTSKGEAIYSDRALFAEEMVALLQRQS 224
LFAAIPAV+A+N + + + F EE A+L RQ+
Sbjct 182 LFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQA 221
>P0ABU9 Tol-Pal system protein TolQ [Escherichia coli (strain
K12)]
Length=230
Score = 186 bits (473), Expect = 8e-63
Identities = 101/220 (46%), Positives = 142/220 (65%), Gaps = 2/220 (1%)
Query 7 SSLHISDLILQASPVVQAVMLILLLASIYSWYLIAKLHLSYKKSAQQDEHFQKMFWSGAE 66
+ ++I DL L+AS +V+ +MLIL+ SI SW +I + +A++ E F+ FWSG E
Sbjct 2 TDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGIE 61
Query 67 LNTLYNNAQ-LNSKRTGLEDIFYHGLGEFFKLKKRQATSTQTI-EGTERILRVGLSRDQS 124
L+ LY +Q TG E IFY G EF +L + + + + + EG R +R+ ++R+
Sbjct 62 LSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPEAVVEGASRAMRISMNRELE 121
Query 125 QLEQGLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIATAIG 184
LE + L ++GS++PY+GLFGTVWGIM+AFI L AV Q TL VAPGIAEALIATAIG
Sbjct 122 NLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIG 181
Query 185 LFAAIPAVLAFNHFTSKGEAIYSDRALFAEEMVALLQRQS 224
LFAAIPAV+A+N + + + F EE A+L RQ+
Sbjct 182 LFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQA 221
>P43768 Tol-Pal system protein TolQ [Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=228
Score = 177 bits (448), Expect = 4e-59
Identities = 101/224 (45%), Positives = 142/224 (63%), Gaps = 6/224 (3%)
Query 7 SSLHISDLILQASPVVQAVMLILLLASIYSWYLIAKLHLSYKKSAQQDEHFQKMFWSGAE 66
+ L+ DL L+AS VVQ V++IL+ SI SW +I + + ++ F+ FWSG +
Sbjct 3 AELNFLDLFLKASIVVQLVIVILISFSIISWAIIIQRSRILTNALKEARTFEDRFWSGED 62
Query 67 LNTLYNNAQLNSKRTGL---EDIFYHGLGEFFKLKKRQATSTQTI-EGTERILRVGLSRD 122
LN LY L+++R GL E IF G EF +LK+ + + I +GT R + + ++R+
Sbjct 63 LNKLYEG--LSNRRDGLTGSEQIFCVGFKEFSRLKQVNPDAPEAIIKGTMRAMNLAMNRE 120
Query 123 QSQLEQGLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIATA 182
LE + LA++ SV+PY+GLFGTVWGIM+AF+ L+ Q TL VAPGIAEALIATA
Sbjct 121 IESLENRVPFLATVASVSPYIGLFGTVWGIMHAFMALSGAKQATLQMVAPGIAEALIATA 180
Query 183 IGLFAAIPAVLAFNHFTSKGEAIYSDRALFAEEMVALLQRQSVG 226
IGLFAAIPAV+A+N + + AI D F +E +L RQ+ G
Sbjct 181 IGLFAAIPAVMAYNRLSLRVNAIEQDYGNFIDEFTTILHRQAFG 224
>P0ABU8 Biopolymer transport protein ExbB [Escherichia coli O157:H7]
Length=244
Score = 114 bits (286), Expect = 1e-34
Identities = 75/197 (38%), Positives = 113/197 (57%), Gaps = 7/197 (4%)
Query 5 IQSSLHISDLILQASPVVQAVMLILLLASIYSWYLIAKLHLSYKKSAQQDEHFQKMFWSG 64
+Q+ L + + A VV+ VM+ L+LAS+ +W + + + ++ + Q++
Sbjct 6 MQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLL--- 62
Query 65 AELNTLYNNAQLNSKRTGLEDIFYHGLGEF---FKLKKRQATSTQTIEGTERILRVGLSR 121
AE +L N A + G + + H L E +L + + E T L ++
Sbjct 63 AEARSL-NQANDIAADFGSKSLSLHLLNEAQNELELSEGSDDNEGIKERTSFRLERRVAA 121
Query 122 DQSQLEQGLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIAT 181
Q+ +G G LA+IG+++P+VGLFGTVWGIMN+FIG+A LA VAPGIAEAL+AT
Sbjct 122 VGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLAT 181
Query 182 AIGLFAAIPAVLAFNHF 198
AIGL AAIPAV+ +N F
Sbjct 182 AIGLVAAIPAVVIYNVF 198
>P0ABU7 Biopolymer transport protein ExbB [Escherichia coli (strain
K12)]
Length=244
Score = 114 bits (286), Expect = 1e-34
Identities = 75/197 (38%), Positives = 113/197 (57%), Gaps = 7/197 (4%)
Query 5 IQSSLHISDLILQASPVVQAVMLILLLASIYSWYLIAKLHLSYKKSAQQDEHFQKMFWSG 64
+Q+ L + + A VV+ VM+ L+LAS+ +W + + + ++ + Q++
Sbjct 6 MQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFNQKRRLKREQQLL--- 62
Query 65 AELNTLYNNAQLNSKRTGLEDIFYHGLGEF---FKLKKRQATSTQTIEGTERILRVGLSR 121
AE +L N A + G + + H L E +L + + E T L ++
Sbjct 63 AEARSL-NQANDIAADFGSKSLSLHLLNEAQNELELSEGSDDNEGIKERTSFRLERRVAA 121
Query 122 DQSQLEQGLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIAT 181
Q+ +G G LA+IG+++P+VGLFGTVWGIMN+FIG+A LA VAPGIAEAL+AT
Sbjct 122 VGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLAT 181
Query 182 AIGLFAAIPAVLAFNHF 198
AIGL AAIPAV+ +N F
Sbjct 182 AIGLVAAIPAVVIYNVF 198
>Q05605 Biopolymer transport protein ExbB [Pseudomonas putida]
Length=329
Score = 110 bits (275), Expect = 3e-32
Identities = 83/209 (40%), Positives = 114/209 (55%), Gaps = 16/209 (8%)
Query 18 ASPVVQAVMLILLLASIYSWYL-IAK-LHLSYKKSAQQDEHFQKMFWSGAELNTLYNNAQ 75
A VV+ VM+ L +ASI +W + IAK L K + E Q + +L ++
Sbjct 110 ADIVVKIVMIGLAIASIITWTIWIAKGFELMGAKRRLRGEIAQLK-----KSASLKEASE 164
Query 76 LNSKRTGLEDIFYHGLGEFFKLKKRQATSTQTIEGTERILRVGLSR----DQSQLEQGLG 131
+++K L H E +L + +T+ EG + + L R + G G
Sbjct 165 VSNKEGTLAHTLVHDALEEMRL----SANTREKEGIKERVAFRLERLVAASGRNMSSGTG 220
Query 132 TLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIATAIGLFAAIPA 191
LA+IGS AP+VGLFGTVWGIMN+FIG+A LA VAPGIAEAL+ATA+GL AAIPA
Sbjct 221 VLATIGSTAPFVGLFGTVWGIMNSFIGIAKTQTTNLAVVAPGIAEALLATALGLVAAIPA 280
Query 192 VLAFNHFTSKGEAIYSDRALFAEEMVALL 220
V+ +N F ++ A Y + A V LL
Sbjct 281 VVIYNVF-ARSIAGYKAQVSDASAQVLLL 308
>P0A1H8 Biopolymer transport protein ExbB [Salmonella typhi]
Length=244
Score = 107 bits (268), Expect = 5e-32
Identities = 75/220 (34%), Positives = 116/220 (53%), Gaps = 4/220 (2%)
Query 5 IQSSLHISDLILQASPVVQAVMLILLLASIYSWYLIAKLHLSYKKSAQQDEHFQKMFWSG 64
+Q+ L + + A VV+ VM+ L+LAS+ +W + + + ++ + Q
Sbjct 6 MQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFTQKRRLKREQLQLADA 65
Query 65 AELNTLYNNAQLNSKRTGLEDIFYHGLGEFFKLKKRQATSTQTIEGTERILRVGLSRDQS 124
L+ + A S ++ + E +L + + E T L ++
Sbjct 66 RSLDQASDIAAGFSAKSLSAQLINEAQNEL-ELSQGSEDNEGIKERTGFRLERRVAAVGR 124
Query 125 QLEQGLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIATAIG 184
+ +G G LA+IG+++P+VGLFGTVWGIMN+FIG+A LA VAPGIAEAL+ATAIG
Sbjct 125 YMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIG 184
Query 185 LFAAIPAVLAFNHFTSKGEAIYSDRALFAEEMVALLQRQS 224
L AAIPAV+ +N F + I S +A + +L QS
Sbjct 185 LVAAIPAVVIYNIFARQ---IGSYKATLGDVAAQVLLLQS 221
>P0A1H7 Biopolymer transport protein ExbB [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=244
Score = 107 bits (268), Expect = 5e-32
Identities = 75/220 (34%), Positives = 116/220 (53%), Gaps = 4/220 (2%)
Query 5 IQSSLHISDLILQASPVVQAVMLILLLASIYSWYLIAKLHLSYKKSAQQDEHFQKMFWSG 64
+Q+ L + + A VV+ VM+ L+LAS+ +W + + + ++ + Q
Sbjct 6 MQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSKSVEFFTQKRRLKREQLQLADA 65
Query 65 AELNTLYNNAQLNSKRTGLEDIFYHGLGEFFKLKKRQATSTQTIEGTERILRVGLSRDQS 124
L+ + A S ++ + E +L + + E T L ++
Sbjct 66 RSLDQASDIAAGFSAKSLSAQLINEAQNEL-ELSQGSEDNEGIKERTGFRLERRVAAVGR 124
Query 125 QLEQGLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIATAIG 184
+ +G G LA+IG+++P+VGLFGTVWGIMN+FIG+A LA VAPGIAEAL+ATAIG
Sbjct 125 YMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIG 184
Query 185 LFAAIPAVLAFNHFTSKGEAIYSDRALFAEEMVALLQRQS 224
L AAIPAV+ +N F + I S +A + +L QS
Sbjct 185 LVAAIPAVVIYNIFARQ---IGSYKATLGDVAAQVLLLQS 221
>P64100 Biopolymer transport protein ExbB [Neisseria meningitidis
serogroup B (strain MC58)]
Length=220
Score = 99.4 bits (246), Expect = 5e-29
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 20/215 (9%)
Query 20 PVVQAVMLILLLASIYSWYLIA----KLHLSYKKSAQQDEHFQKMFWSGAELNTLYNNAQ 75
PV+ V +++LL SI +W L+ KL+ + K +A H + +TL N
Sbjct 12 PVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARKGNAAVKRHMR---------DTLSLNDA 62
Query 76 LNSKRT---GLEDIFYHGLGEFFKLKKRQATS-TQTIEGTERI---LRVGLSRDQSQLEQ 128
+ R L + L + ++ +A+ Q + E + +R +++ + +
Sbjct 63 VEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRFDY 122
Query 129 GLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIATAIGLFAA 188
G+ LASIG+ AP++GLFGTVWGI +A I + Q+++A VA I EAL+ATA GLF A
Sbjct 123 GMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLFVA 182
Query 189 IPAVLAFNHFTSKGEAIYSDRALFAEEMVALLQRQ 223
IPAVLA+N + + D A ++ L Q
Sbjct 183 IPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQ 217
>P64099 Biopolymer transport protein ExbB [Neisseria meningitidis
serogroup A / serotype 4A (strain DSM 15465 / Z2491)]
Length=220
Score = 99.4 bits (246), Expect = 5e-29
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 20/215 (9%)
Query 20 PVVQAVMLILLLASIYSWYLIA----KLHLSYKKSAQQDEHFQKMFWSGAELNTLYNNAQ 75
PV+ V +++LL SI +W L+ KL+ + K +A H + +TL N
Sbjct 12 PVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARKGNAAVKRHMR---------DTLSLNDA 62
Query 76 LNSKRT---GLEDIFYHGLGEFFKLKKRQATS-TQTIEGTERI---LRVGLSRDQSQLEQ 128
+ R L + L + ++ +A+ Q + E + +R +++ + +
Sbjct 63 VEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRFDY 122
Query 129 GLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIATAIGLFAA 188
G+ LASIG+ AP++GLFGTVWGI +A I + Q+++A VA I EAL+ATA GLF A
Sbjct 123 GMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLFVA 182
Query 189 IPAVLAFNHFTSKGEAIYSDRALFAEEMVALLQRQ 223
IPAVLA+N + + D A ++ L Q
Sbjct 183 IPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQ 217
>P95375 Biopolymer transport protein ExbB [Neisseria meningitidis
serogroup C]
Length=220
Score = 98.2 bits (243), Expect = 1e-28
Identities = 68/214 (32%), Positives = 110/214 (51%), Gaps = 18/214 (8%)
Query 20 PVVQAVMLILLLASIYSWYLIA----KLHLSYKKSAQQDEHFQKMFWSGAELNTLYNNA- 74
PV+ V +++LL SI +W L+ KL+ + K +A H + N N A
Sbjct 12 PVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARKGNAAVKRHMRD--------NLSLNEAV 63
Query 75 -QLNSKRTGLEDIFYHGLGEFFKLKKRQATS-TQTIEGTERI---LRVGLSRDQSQLEQG 129
++ + L + L + ++ +A+ Q + E + +R +++ + + G
Sbjct 64 EKVRAVDAPLSKLAQEALQFYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRFDYG 123
Query 130 LGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIATAIGLFAAI 189
+ LASIG+ AP++GLFGTVWGI +A I + Q+++A VA I EAL+ATA GLF AI
Sbjct 124 MTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLFVAI 183
Query 190 PAVLAFNHFTSKGEAIYSDRALFAEEMVALLQRQ 223
PAVLA+N + + D A ++ L Q
Sbjct 184 PAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQ 217
>O06433 Biopolymer transport protein ExbB [Neisseria gonorrhoeae]
Length=220
Score = 97.4 bits (241), Expect = 3e-28
Identities = 68/215 (32%), Positives = 109/215 (51%), Gaps = 20/215 (9%)
Query 20 PVVQAVMLILLLASIYSWYLIA----KLHLSYKKSAQQDEHFQKMFWSGAELNTLYNNAQ 75
PV+ V +++LL S +W L+ KL+ + K +A H + +TL N
Sbjct 12 PVLIGVFVLMLLMSTVTWCLVVLRCIKLYRARKGNAAVKRHMR---------DTLSLNDA 62
Query 76 LNSKRT---GLEDIFYHGLGEFFKLKKRQATS-TQTIEGTERI---LRVGLSRDQSQLEQ 128
+ R L + L + ++ +A+ Q + E + +R +++ + +
Sbjct 63 VEKVRAVDAPLSKLAQEALQSYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRFDY 122
Query 129 GLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLATVAPGIAEALIATAIGLFAA 188
G+ LASIG+ AP++GLFGTVWGI +A I + Q+++A VA I EAL+ATA GLF A
Sbjct 123 GMTALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLFVA 182
Query 189 IPAVLAFNHFTSKGEAIYSDRALFAEEMVALLQRQ 223
IPAVLA+N + + D A ++ L Q
Sbjct 183 IPAVLAYNFLNRGTKILTQDLDAMAHDLHVRLLNQ 217
>P0C7L9 Biopolymer transport protein ExbB [Xanthomonas campestris
pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528
/ LMG 568 / P 25)]
Length=253
Score = 95.9 bits (237), Expect = 2e-27
Identities = 47/108 (44%), Positives = 69/108 (64%), Gaps = 0/108 (0%)
Query 109 EGTERILRVGLSRDQSQLEQGLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLA 168
E +R LR ++R+ ++L+ G+ LA++G+ AP+VGL GTVWGI A I + A ++
Sbjct 135 EFVDRALRQAVTRESTKLQSGMTLLATVGATAPFVGLLGTVWGIYGALIKIGATGSASID 194
Query 169 TVAPGIAEALIATAIGLFAAIPAVLAFNHFTSKGEAIYSDRALFAEEM 216
VA + EALI TAIGLF AIPAV AFN F+ ++ + FA ++
Sbjct 195 AVAGPVGEALIMTAIGLFVAIPAVFAFNFFSKVNSSVIAKFDTFAHDL 242
Score = 18.9 bits (37), Expect = 1.3
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 0/27 (0%)
Query 74 AQLNSKRTGLEDIFYHGLGEFFKLKKR 100
+++NS D F H L +FF R
Sbjct 225 SKVNSSVIAKFDTFAHDLHDFFATGSR 251
>B0RLE6 Biopolymer transport protein ExbB [Xanthomonas campestris
pv. campestris (strain B100)]
Length=253
Score = 95.9 bits (237), Expect = 2e-27
Identities = 47/108 (44%), Positives = 69/108 (64%), Gaps = 0/108 (0%)
Query 109 EGTERILRVGLSRDQSQLEQGLGTLASIGSVAPYVGLFGTVWGIMNAFIGLAAVDQVTLA 168
E +R LR ++R+ ++L+ G+ LA++G+ AP+VGL GTVWGI A I + A ++
Sbjct 135 EFVDRALRQAVTRESTKLQSGMTLLATVGATAPFVGLLGTVWGIYGALIKIGATGSASID 194
Query 169 TVAPGIAEALIATAIGLFAAIPAVLAFNHFTSKGEAIYSDRALFAEEM 216
VA + EALI TAIGLF AIPAV AFN F+ ++ + FA ++
Sbjct 195 AVAGPVGEALIMTAIGLFVAIPAVFAFNFFSKVNSSVIAKFDTFAHDL 242
Score = 18.9 bits (37), Expect = 1.3
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 0/27 (0%)
Query 74 AQLNSKRTGLEDIFYHGLGEFFKLKKR 100
+++NS D F H L +FF R
Sbjct 225 SKVNSSVIAKFDTFAHDLHDFFATGSR 251
>O51808 Biopolymer transport protein ExbB [Haemophilus ducreyi
(strain 35000HP / ATCC 700724)]
Length=150
Score = 57.0 bits (136), Expect = 8e-14
Identities = 38/107 (36%), Positives = 59/107 (55%), Gaps = 12/107 (11%)
Query 98 KKRQATSTQTIEGTERILRVGLSRDQSQLEQGLGTLASIGSVAPYVGLFGTVWGIMNAFI 157
K+ TS +TI+ E L + L T+++IG+ APYVGL GTV GI+ F
Sbjct 39 KQLNVTSYETIQELE-----------IDLTRNLTTISTIGANAPYVGLLGTVLGILLTFY 87
Query 158 GLA-AVDQVTLATVAPGIAEALIATAIGLFAAIPAVLAFNHFTSKGE 203
L + ++ A++ ++ AL ATA G+ AIPA++ ++ F K E
Sbjct 88 HLGHSGGEIDAASIMVHLSLALKATAAGILVAIPAMMFYSGFNRKVE 134
Lambda K H a alpha
0.323 0.135 0.381 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 625716
Database: d693c1888cc63d0e14098362a048f7be.SwissProt.fasta
Posted date: Jun 2, 2024 2:25 PM
Number of letters in database: 3,990
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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