BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 3e74e0a5b012de72268bfed2fecc9307.TrEMBL.fasta
28 sequences; 5,542 total letters
Query= ACIAD2627
Length=213
Score E
Sequences producing significant alignments: (Bits) Value
Q6F980 Putative RNA polymerase sigma factor [Acinetobacter baylyi... 424 3e-157
A0A7G2SAY4 RNA polymerase sigma factor [Acinetobacter sp] 411 4e-152
A0A0M1I693 RNA polymerase sigma70 factor [Acinetobacter sp. C15] 390 6e-144
A0A427M414 RNA polymerase sigma factor [Acinetobacter soli] 389 2e-143
N9BSQ5 RNA polymerase sigma factor 70 region 4 type 2 domain-cont... 389 2e-143
A0A1P8EEW5 RNA polymerase sigma factor [Acinetobacter soli] 387 2e-142
D0SK65 RNA polymerase factor sigma-70 [Acinetobacter junii SH205] 363 7e-133
N9Q4J6 RNA polymerase sigma factor [Acinetobacter vivianii] 360 9e-132
A0A0B0KLF2 Putative RNA polymerase sigma factor [Acinetobacter sp... 359 1e-131
A0A3N4RA96 RNA polymerase sigma-70 factor (ECF subfamily) [Acinet... 358 3e-131
N8UXM2 RNA polymerase sigma factor [Acinetobacter vivianii] 358 3e-131
N9R332 RNA polymerase sigma factor [Acinetobacter colistiniresist... 358 3e-131
K9BFJ4 RNA polymerase factor sigma-70 [Acinetobacter sp. WC-323] 358 3e-131
N9RZN4 RNA polymerase sigma factor [Acinetobacter sp. ANC 3880] 358 4e-131
A0A2N0WFR3 RNA polymerase sigma factor [Acinetobacter proteolyticus] 358 4e-131
N8XN54 RNA polymerase sigma factor [Acinetobacter sp. CIP 56.2] 358 4e-131
N9SXV4 RNA polymerase sigma factor [Acinetobacter genomosp. 16BJ] 358 4e-131
Q6KBW7 RNA polymerase sigma factor [Burkholderia cepacia] 52.4 8e-12
Q9AE28 RNA polymerase sigma factor [Rhizobium leguminosarum] 51.6 1e-11
A0FHT5 Putative ECF sigma factor protein [uncultured bacterium] 48.9 1e-10
A0FHT7 Putative ECF sigma factor protein [uncultured bacterium] 48.5 1e-10
A0FHU3 Putative ECF sigma factor protein [uncultured bacterium] 48.1 2e-10
A0FHU0 Putative ECF sigma factor protein [uncultured bacterium] 48.1 2e-10
A0FHT9 Putative ECF sigma factor protein [uncultured bacterium] 46.6 7e-10
D7PC27 Putative sigma-24 [Streptomyces luridus] 45.8 2e-09
G9HQL5 RNA polymerase sigma factor [Pseudomonas fluorescens] 43.5 9e-09
Q93D72 RNA polymerase sigma factor [Pseudomonas fluorescens] 43.5 9e-09
A5JL21 RNA polymerase sigma factor [Pseudomonas aeruginosa] 43.1 1e-08
>Q6F980 Putative RNA polymerase sigma factor [Acinetobacter baylyi
(strain ATCC 33305 / BD413 / ADP1)]
Length=212
Score = 424 bits (1091), Expect = 3e-157
Identities = 212/212 (100%), Positives = 212/212 (100%), Gaps = 0/212 (0%)
Query 1 MTGFSISMDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLV 60
MTGFSISMDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLV
Sbjct 1 MTGFSISMDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLV 60
Query 61 QEAFIALHKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVT 120
QEAFIALHKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVT
Sbjct 61 QEAFIALHKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVT 120
Query 121 DVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEG 180
DVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEG
Sbjct 121 DVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEG 180
Query 181 SVKTHYHRAIQGLRASLAHLNPSLGGSSDESR 212
SVKTHYHRAIQGLRASLAHLNPSLGGSSDESR
Sbjct 181 SVKTHYHRAIQGLRASLAHLNPSLGGSSDESR 212
>A0A7G2SAY4 RNA polymerase sigma factor [Acinetobacter sp]
Length=205
Score = 411 bits (1057), Expect = 4e-152
Identities = 205/205 (100%), Positives = 205/205 (100%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL
Sbjct 1 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT
Sbjct 61 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH
Sbjct 121 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLRASLAHLNPSLGGSSDESR
Sbjct 181 RAIQGLRASLAHLNPSLGGSSDESR 205
>A0A0M1I693 RNA polymerase sigma70 factor [Acinetobacter sp. C15]
Length=205
Score = 390 bits (1003), Expect = 6e-144
Identities = 191/205 (93%), Positives = 202/205 (99%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQSR++RSTHEGTVEQRLKFFMQDV+GRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQSRTERSTHEGTVEQRLKFFMQDVSGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+ DEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSD+E+TDVVDETT
Sbjct 61 HKSYADKSIDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDDEITDVVDETT 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPF+FLDQAVTIEEIQ AI++LPVRQQQAFMLRAWEGFDTQTTAQIMNC+EGSVKTHYH
Sbjct 121 PNPFDFLDQAVTIEEIQDAISKLPVRQQQAFMLRAWEGFDTQTTAQIMNCTEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLRASLAHLNPSLGGSSDESR
Sbjct 181 RAIQGLRASLAHLNPSLGGSSDESR 205
>A0A427M414 RNA polymerase sigma factor [Acinetobacter soli]
Length=205
Score = 389 bits (999), Expect = 2e-143
Identities = 190/205 (93%), Positives = 201/205 (98%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQSR++RSTHEGT EQRLKFFMQDV+GRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQSRTERSTHEGTAEQRLKFFMQDVSGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+ DEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSD+E+TDVVDETT
Sbjct 61 HKSYADKSIDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDDEITDVVDETT 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPF+FLDQAVTIEEIQ AI++LPVRQQQAFMLRAWEGFDTQTTAQIMNC+EGSVKTHYH
Sbjct 121 PNPFDFLDQAVTIEEIQDAISKLPVRQQQAFMLRAWEGFDTQTTAQIMNCTEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLRASLAHLNPSLGGSSDESR
Sbjct 181 RAIQGLRASLAHLNPSLGGSSDESR 205
>N9BSQ5 RNA polymerase sigma factor 70 region 4 type 2 domain-containing
protein [Acinetobacter soli NIPH 2899]
Length=205
Score = 389 bits (999), Expect = 2e-143
Identities = 190/205 (93%), Positives = 201/205 (98%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQSR++RSTHEGT EQRLKFFMQDV+GRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQSRTERSTHEGTAEQRLKFFMQDVSGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+ DEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSD+E+TDVVDETT
Sbjct 61 HKSYADKSIDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDDEITDVVDETT 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPF+FLDQAVTIEEIQ AI++LPVRQQQAFMLRAWEGFDTQTTAQIMNC+EGSVKTHYH
Sbjct 121 PNPFDFLDQAVTIEEIQDAISKLPVRQQQAFMLRAWEGFDTQTTAQIMNCTEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLRASLAHLNPSLGGSSDESR
Sbjct 181 RAIQGLRASLAHLNPSLGGSSDESR 205
>A0A1P8EEW5 RNA polymerase sigma factor [Acinetobacter soli]
Length=205
Score = 387 bits (993), Expect = 2e-142
Identities = 189/205 (92%), Positives = 200/205 (98%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQSR++RSTHEGT EQRLKFFMQDV+GRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQSRTERSTHEGTAEQRLKFFMQDVSGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+ DEWYPLFYTILNNKLQDWRRKEARRSNPFSF KKVSLDSD+E+TDVVDETT
Sbjct 61 HKSYADKSIDEWYPLFYTILNNKLQDWRRKEARRSNPFSFLKKVSLDSDDEITDVVDETT 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPF+FLDQAVTIEEIQ AI++LPVRQQQAFMLRAWEGFDTQTTAQIMNC+EGSVKTHYH
Sbjct 121 PNPFDFLDQAVTIEEIQDAISKLPVRQQQAFMLRAWEGFDTQTTAQIMNCTEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLRASLAHLNPSLGGSSDESR
Sbjct 181 RAIQGLRASLAHLNPSLGGSSDESR 205
>D0SK65 RNA polymerase factor sigma-70 [Acinetobacter junii SH205]
Length=210
Score = 363 bits (931), Expect = 7e-133
Identities = 176/210 (84%), Positives = 192/210 (91%), Gaps = 0/210 (0%)
Query 1 MTGFSISMDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLV 60
MTGFSISMDLAPKQ+++D TH GT EQRL+FFMQDVTGRALVMMESATQGQ GIAMDLV
Sbjct 1 MTGFSISMDLAPKQAQTDSGTHTGTAEQRLRFFMQDVTGRALVMMESATQGQQGIAMDLV 60
Query 61 QEAFIALHKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVT 120
QEAFI+LHKSY+DK DEWYPLFYTILNNKLQDWRRKEARR++PFS FKK+S+D DEE+
Sbjct 61 QEAFISLHKSYSDKTVDEWYPLFYTILNNKLQDWRRKEARRASPFSLFKKISIDDDEELI 120
Query 121 DVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEG 180
DVVDE+TPNPFEFL+Q VT+EEIQ AI +LPVRQQQAFMLRAWEGFDT TTAQIMNCSEG
Sbjct 121 DVVDESTPNPFEFLNQEVTMEEIQDAIHKLPVRQQQAFMLRAWEGFDTITTAQIMNCSEG 180
Query 181 SVKTHYHRAIQGLRASLAHLNPSLGGSSDE 210
SVKTHYHRAIQGLR +L HLNP GGSSDE
Sbjct 181 SVKTHYHRAIQGLRIALEHLNPHSGGSSDE 210
>N9Q4J6 RNA polymerase sigma factor [Acinetobacter vivianii]
Length=205
Score = 360 bits (923), Expect = 9e-132
Identities = 175/205 (85%), Positives = 188/205 (92%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQ+R++ T TVEQRL+FFMQDVTGRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQARTENGTDRSTVEQRLRFFMQDVTGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+TDEWYPLFYTILNNKLQDWRRKEARR++PFS FKK+SLD DEE+ DVVDE+T
Sbjct 61 HKSYADKSTDEWYPLFYTILNNKLQDWRRKEARRASPFSLFKKISLDDDEEIIDVVDEST 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPFEFLDQ VTIEEIQAAI QLPVRQQQAFMLRAWEGFDT TTAQIM+CSEGSVKTHYH
Sbjct 121 PNPFEFLDQEVTIEEIQAAINQLPVRQQQAFMLRAWEGFDTMTTAQIMDCSEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLR +L HLNP GGSSDE R
Sbjct 181 RAIQGLRIALEHLNPHTGGSSDEKR 205
>A0A0B0KLF2 Putative RNA polymerase sigma factor [Acinetobacter
sp. neg1]
Length=205
Score = 359 bits (922), Expect = 1e-131
Identities = 174/205 (85%), Positives = 188/205 (92%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQ+R++ T TVEQRL+FFMQDVTGRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQARTENGTDRSTVEQRLRFFMQDVTGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+TDEWYPLFYTILNNKLQDWRRKEARR++PFS FKK+SLD DEE+ DVVDE+T
Sbjct 61 HKSYADKSTDEWYPLFYTILNNKLQDWRRKEARRASPFSLFKKISLDDDEEIIDVVDEST 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPFEFLDQ VTIEEIQAAI QLPVRQQQAFMLRAWEGFDT TTAQ+M+CSEGSVKTHYH
Sbjct 121 PNPFEFLDQEVTIEEIQAAINQLPVRQQQAFMLRAWEGFDTMTTAQVMDCSEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLR +L HLNP GGSSDE R
Sbjct 181 RAIQGLRIALEHLNPHTGGSSDEKR 205
>A0A3N4RA96 RNA polymerase sigma-70 factor (ECF subfamily) [Acinetobacter
sp. BIGb0102]
Length=205
Score = 358 bits (920), Expect = 3e-131
Identities = 174/205 (85%), Positives = 188/205 (92%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQ+R++ T TVEQRL+FFMQDVTGRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQARTENGTDRSTVEQRLRFFMQDVTGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+TDEWYPLFYTILNNKLQDWRRKEARR++PFS FKK+SLD DEE+ DVVDE+T
Sbjct 61 HKSYADKSTDEWYPLFYTILNNKLQDWRRKEARRASPFSLFKKISLDDDEEIIDVVDEST 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPFEFLDQ VT+EEIQAAI QLPVRQQQAFMLRAWEGFDT TTAQIM+CSEGSVKTHYH
Sbjct 121 PNPFEFLDQEVTMEEIQAAINQLPVRQQQAFMLRAWEGFDTMTTAQIMDCSEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLR +L HLNP GGSSDE R
Sbjct 181 RAIQGLRIALEHLNPHTGGSSDEKR 205
>N8UXM2 RNA polymerase sigma factor [Acinetobacter vivianii]
Length=205
Score = 358 bits (920), Expect = 3e-131
Identities = 174/205 (85%), Positives = 188/205 (92%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQ+R++ T TVEQRL+FFMQDVTGRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQARTENGTDRSTVEQRLRFFMQDVTGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+TDEWYPLFYTILNNKLQDWRRKEARR++PFS FKK+SLD DEE+ DVVDE+T
Sbjct 61 HKSYADKSTDEWYPLFYTILNNKLQDWRRKEARRASPFSLFKKISLDDDEEIIDVVDEST 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPFEFLDQ VT+EEIQAAI QLPVRQQQAFMLRAWEGFDT TTAQIM+CSEGSVKTHYH
Sbjct 121 PNPFEFLDQEVTMEEIQAAINQLPVRQQQAFMLRAWEGFDTMTTAQIMDCSEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLR +L HLNP GGSSDE R
Sbjct 181 RAIQGLRIALEHLNPHTGGSSDEKR 205
>N9R332 RNA polymerase sigma factor [Acinetobacter colistiniresistens]
Length=205
Score = 358 bits (920), Expect = 3e-131
Identities = 174/205 (85%), Positives = 189/205 (92%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQ+R++ ST TVEQRL+FFMQDVTGRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQARTENSTDRSTVEQRLRFFMQDVTGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+T+EWYPLFYTILNNKLQDWRRKEARR++PFS FKK+SLD DEE+ DVVDE+T
Sbjct 61 HKSYADKSTEEWYPLFYTILNNKLQDWRRKEARRASPFSLFKKISLDDDEEIIDVVDEST 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPFEFLDQ VT+EEIQAAI QLPVRQQQAFMLRAWEGFDT TTAQIM+CSEGSVKTHYH
Sbjct 121 PNPFEFLDQEVTMEEIQAAINQLPVRQQQAFMLRAWEGFDTMTTAQIMDCSEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLR +L HLNP GGSSDE R
Sbjct 181 RAIQGLRIALEHLNPHTGGSSDEKR 205
>K9BFJ4 RNA polymerase factor sigma-70 [Acinetobacter sp. WC-323]
Length=205
Score = 358 bits (920), Expect = 3e-131
Identities = 174/205 (85%), Positives = 188/205 (92%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQ+R++ T TVEQRL+FFMQDVTGRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQARTENGTDRSTVEQRLRFFMQDVTGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+TDEWYPLFYTILNNKLQDWRRKEARR++PFS FKK+SLD DEE+ DVVDE+T
Sbjct 61 HKSYADKSTDEWYPLFYTILNNKLQDWRRKEARRASPFSLFKKISLDDDEEIIDVVDEST 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPFEFLDQ VT+EEIQAAI QLPVRQQQAFMLRAWEGFDT TTAQIM+CSEGSVKTHYH
Sbjct 121 PNPFEFLDQEVTMEEIQAAINQLPVRQQQAFMLRAWEGFDTMTTAQIMDCSEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLR +L HLNP GGSSDE R
Sbjct 181 RAIQGLRIALEHLNPHTGGSSDEKR 205
>N9RZN4 RNA polymerase sigma factor [Acinetobacter sp. ANC 3880]
Length=205
Score = 358 bits (919), Expect = 4e-131
Identities = 173/205 (84%), Positives = 189/205 (92%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQ+R++ ST TVEQRL+FFMQDVTGRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQARTENSTDRSTVEQRLRFFMQDVTGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+T+EWYPLFYTILNNKLQDWRRKEARR++PFS FKK+SLD DEE+ DVVDE+T
Sbjct 61 HKSYADKSTEEWYPLFYTILNNKLQDWRRKEARRASPFSLFKKISLDDDEEIIDVVDEST 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPFEFLDQ VT+EEIQAA+ QLPVRQQQAFMLRAWEGFDT TTAQIM+CSEGSVKTHYH
Sbjct 121 PNPFEFLDQEVTMEEIQAAVNQLPVRQQQAFMLRAWEGFDTMTTAQIMDCSEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLR +L HLNP GGSSDE R
Sbjct 181 RAIQGLRIALEHLNPHTGGSSDEKR 205
>A0A2N0WFR3 RNA polymerase sigma factor [Acinetobacter proteolyticus]
Length=205
Score = 358 bits (919), Expect = 4e-131
Identities = 173/205 (84%), Positives = 189/205 (92%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQ+R++ ST TVEQRL+FFMQDVTGRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQARTENSTDRSTVEQRLRFFMQDVTGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+T+EWYPLFYTILNNKLQDWRRKEARR++PFS FKK+SLD DEE+ D+VDE+T
Sbjct 61 HKSYADKSTEEWYPLFYTILNNKLQDWRRKEARRASPFSLFKKISLDDDEEIIDIVDEST 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPFEFLDQ VT+EEIQAAI QLPVRQQQAFMLRAWEGFDT TTAQIM+CSEGSVKTHYH
Sbjct 121 PNPFEFLDQEVTMEEIQAAINQLPVRQQQAFMLRAWEGFDTMTTAQIMDCSEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLR +L HLNP GGSSDE R
Sbjct 181 RAIQGLRIALEHLNPHTGGSSDEKR 205
>N8XN54 RNA polymerase sigma factor [Acinetobacter sp. CIP 56.2]
Length=205
Score = 358 bits (919), Expect = 4e-131
Identities = 173/205 (84%), Positives = 189/205 (92%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQ+R++ ST TVEQRL+FFMQDVTGRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQARTENSTDRSTVEQRLRFFMQDVTGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+T+EWYPLFYTILNNKLQDWRRKEARR++PFS FKK+SLD DEE+ DVVDE+T
Sbjct 61 HKSYADKSTEEWYPLFYTILNNKLQDWRRKEARRASPFSLFKKISLDDDEEIIDVVDEST 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPFEFLDQ VT+EEIQAA+ QLPVRQQQAFMLRAWEGFDT TTAQIM+CSEGSVKTHYH
Sbjct 121 PNPFEFLDQEVTMEEIQAAVNQLPVRQQQAFMLRAWEGFDTMTTAQIMDCSEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLR +L HLNP GGSSDE R
Sbjct 181 RAIQGLRIALEHLNPHTGGSSDEKR 205
>N9SXV4 RNA polymerase sigma factor [Acinetobacter genomosp. 16BJ]
Length=205
Score = 358 bits (919), Expect = 4e-131
Identities = 173/205 (84%), Positives = 189/205 (92%), Gaps = 0/205 (0%)
Query 8 MDLAPKQSRSDRSTHEGTVEQRLKFFMQDVTGRALVMMESATQGQHGIAMDLVQEAFIAL 67
MDLAPKQ+R++ ST TVEQRL+FFMQDVTGRALVMMESATQGQ GIAMDLVQEAFI+L
Sbjct 1 MDLAPKQARTENSTDRSTVEQRLRFFMQDVTGRALVMMESATQGQQGIAMDLVQEAFISL 60
Query 68 HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSDEEVTDVVDETT 127
HKSYADK+T+EWYPLFYTILNNKLQDWRRKEARR++PFS FKK+SLD DEE+ DVVDE+T
Sbjct 61 HKSYADKSTEEWYPLFYTILNNKLQDWRRKEARRASPFSLFKKISLDDDEEIIDVVDEST 120
Query 128 PNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYH 187
PNPFEFLDQ VT+EEIQAA+ QLPVRQQQAFMLRAWEGFDT TTAQIM+CSEGSVKTHYH
Sbjct 121 PNPFEFLDQEVTMEEIQAAVNQLPVRQQQAFMLRAWEGFDTMTTAQIMDCSEGSVKTHYH 180
Query 188 RAIQGLRASLAHLNPSLGGSSDESR 212
RAIQGLR +L HLNP GGSSDE R
Sbjct 181 RAIQGLRIALEHLNPHTGGSSDEKR 205
>Q6KBW7 RNA polymerase sigma factor [Burkholderia cepacia]
Length=199
Score = 52.4 bits (124), Expect = 8e-12
Identities = 37/144 (26%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query 58 DLVQEAFIALHKSYAD-KATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLDSD 116
D+ Q+AFI +++ + +Y Y I N +++ + RR+ + ++
Sbjct 49 DVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAKNYLATQGRRAPTSTEADAEEAETF 108
Query 117 EEVTDVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMN 176
+ + D TP Q E + AA+A LP +QA LR EG + A++M
Sbjct 109 SDADQLRDINTPESMLMSKQIA--ETVNAAMALLPEELRQAITLREIEGLSYEEIAEMMG 166
Query 177 CSEGSVKTHYHRAIQGLRASLAHL 200
C G+V++ RA + + A L L
Sbjct 167 CPIGTVRSRIFRAREAIAAKLRPL 190
>Q9AE28 RNA polymerase sigma factor [Rhizobium leguminosarum]
Length=185
Score = 51.6 bits (122), Expect = 1e-11
Identities = 45/149 (30%), Positives = 73/149 (49%), Gaps = 18/149 (12%)
Query 51 GQHGIAMDLVQEAFIAL--HKSYADKATDEWYPLFYTILNNKLQDWRRKEARRSNPFSFF 108
G+H A DLVQ+A + + + + T+ LF TIL N+L RK R
Sbjct 29 GRHDRADDLVQDAIMKAWAKQDHFEMGTNMKAWLF-TILRNELYSQMRKSGREVQ----- 82
Query 109 KKVSLDSDEEVTDVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDT 168
DSD T+ + P+ + LD +++ + A+ QLP Q++A +L GF
Sbjct 83 -----DSDGLFTESM-AMHPSQYGALD----LQDFKKALDQLPPDQREAIILVGASGFSY 132
Query 169 QTTAQIMNCSEGSVKTHYHRAIQGLRASL 197
+ A+I C+ G++K+ +RA Q L+ L
Sbjct 133 EEAAEICGCAVGTIKSRVNRARQRLQELL 161
>A0FHT5 Putative ECF sigma factor protein [uncultured bacterium]
Length=175
Score = 48.9 bits (115), Expect = 1e-10
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 8/141 (6%)
Query 51 GQHGIAMDLVQEAFIALHKSYADKATDEWYPLFYTILNNKLQD-WRRKEARRSNPFSFFK 109
G A DL Q+ F K ++ ++ + I N L+D WRR+++R +
Sbjct 29 GSSADAADLAQDTFAQWLKWPGRQSVEQPRAFLFQIARNLLRDHWRRQQSRGQD------ 82
Query 110 KVSLDSDEEVTDVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQ 169
+ + + ++ P E +Q + + AA+A+LP R+++AF+L ++G
Sbjct 83 -LDRPAANDEPAALEGEAAGPGERFEQQQRLSHLAAALAELPPRRREAFVLHKFDGLSQV 141
Query 170 TTAQIMNCSEGSVKTHYHRAI 190
A+ M S V+ H A+
Sbjct 142 EVAERMGISLSMVEKHIASAL 162
>A0FHT7 Putative ECF sigma factor protein [uncultured bacterium]
Length=175
Score = 48.5 bits (114), Expect = 1e-10
Identities = 34/141 (24%), Positives = 63/141 (45%), Gaps = 8/141 (6%)
Query 51 GQHGIAMDLVQEAFIALHKSYADKATDEWYPLFYTILNNKLQD-WRRKEARRSNPFSFFK 109
G A DL Q+ F K ++ ++ + I N L+D WRR+++R +
Sbjct 29 GSSADAADLAQDTFAQWLKWPGRQSVEQPRAFLFQIARNLLRDHWRRQQSRGQD------ 82
Query 110 KVSLDSDEEVTDVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQ 169
+ + + ++ P E Q + + AA+A+LP R+++AF+L ++G
Sbjct 83 -IDRPAANDEPAALEGEAAGPGERFGQQQRLSHLAAALAELPPRRREAFVLHKFDGLSQV 141
Query 170 TTAQIMNCSEGSVKTHYHRAI 190
A+ M S V+ H A+
Sbjct 142 EVAERMGISLSMVEKHIASAL 162
>A0FHU3 Putative ECF sigma factor protein [uncultured bacterium]
Length=175
Score = 48.1 bits (113), Expect = 2e-10
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 8/141 (6%)
Query 51 GQHGIAMDLVQEAFIALHKSYADKATDEWYPLFYTILNNKLQD-WRRKEARRSNPFSFFK 109
G A DL Q+ F K ++ ++ + I N L+D WRR+++R +
Sbjct 29 GSSADAADLAQDTFDQWLKWPGRQSVEQPRAFLFQIARNLLRDHWRRQQSRGQD------ 82
Query 110 KVSLDSDEEVTDVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQ 169
+ + + ++ P E +Q + + AA+A+LP R+++AF+L ++G
Sbjct 83 -LDRPAANDEPAALEGEAAGPGERFEQQQRLSHLAAALAELPPRRREAFVLHKFDGLSQV 141
Query 170 TTAQIMNCSEGSVKTHYHRAI 190
A+ M S V+ H A+
Sbjct 142 EVAERMGISLSMVEKHIASAL 162
>A0FHU0 Putative ECF sigma factor protein [uncultured bacterium]
Length=175
Score = 48.1 bits (113), Expect = 2e-10
Identities = 35/141 (25%), Positives = 63/141 (45%), Gaps = 8/141 (6%)
Query 51 GQHGIAMDLVQEAFIALHKSYADKATDEWYPLFYTILNNKLQD-WRRKEARRSNPFSFFK 109
G A DL Q+ F K ++ ++ + I N L+D WRR+++R + +
Sbjct 29 GSSADAADLAQDTFAQWLKWPGRQSVEQPRAFLFQIARNLLRDHWRRQQSRGQD----LE 84
Query 110 KVSLDSDEEVTDVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQ 169
+ + D + V + P E + + + AA+A LP R+++AF+L ++G
Sbjct 85 RPAADDERAVPEA---EVAGPGERFEHQQRLSHLAAALADLPPRRREAFVLHKFDGLSQA 141
Query 170 TTAQIMNCSEGSVKTHYHRAI 190
A M S V+ H A+
Sbjct 142 EVAARMGISLSMVEKHIASAL 162
>A0FHT9 Putative ECF sigma factor protein [uncultured bacterium]
Length=175
Score = 46.6 bits (109), Expect = 7e-10
Identities = 34/141 (24%), Positives = 62/141 (44%), Gaps = 8/141 (6%)
Query 51 GQHGIAMDLVQEAFIALHKSYADKATDEWYPLFYTILNNKLQD-WRRKEARRSNPFSFFK 109
G A DL Q+ F K ++ ++ + I N L+D WRR+++R +
Sbjct 29 GSSADAADLAQDTFAQWLKWPGRQSVEQPRAFLFQIARNLLRDHWRRQQSRGQD------ 82
Query 110 KVSLDSDEEVTDVVDETTPNPFEFLDQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQ 169
+ + + ++ P E Q + + AA+A+LP R+++AF+L +G
Sbjct 83 -LDRPAANDEPAALEGEAAGPGERFGQQQRLSHLAAALAELPPRRREAFVLHKLDGLSQV 141
Query 170 TTAQIMNCSEGSVKTHYHRAI 190
A+ M S V+ H A+
Sbjct 142 EVAERMGISLSMVEKHIASAL 162
>D7PC27 Putative sigma-24 [Streptomyces luridus]
Length=207
Score = 45.8 bits (107), Expect = 2e-09
Identities = 26/63 (41%), Positives = 35/63 (56%), Gaps = 4/63 (6%)
Query 135 DQAVTIEEIQAAIAQLPVRQQQAFMLRAWEGFDTQTTAQIMNCSEGSVKTHYHRAIQGLR 194
DQ V + AA+ +LP RQ++A +LR W G A+ M S GSVKTH R I L
Sbjct 145 DQRVLV----AALRKLPTRQREALVLRHWLGLKESEIAEAMGISCGSVKTHTARGIAALT 200
Query 195 ASL 197
++
Sbjct 201 QAM 203
>G9HQL5 RNA polymerase sigma factor [Pseudomonas fluorescens]
Length=193
Score = 43.5 bits (101), Expect = 9e-09
Identities = 39/152 (26%), Positives = 67/152 (44%), Gaps = 16/152 (11%)
Query 56 AMDLVQEAFIALHKSYADKATDE-WYPLFYTILNNKLQDWRRKEARR--SNPFSFFKKVS 112
A D+ QEAFI +++ + D +Y Y I N +++ RR + S
Sbjct 47 AQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEF 106
Query 113 LDSDEEVTDVVDETTPNPFEFLDQAVTIEEIQAA----IAQLPVRQQQAFMLRAWEGFDT 168
D D + D+ E ++A+ +EI+ I QLP + A LR ++G
Sbjct 107 YDGDHGLKDL---------ESPERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSY 157
Query 169 QTTAQIMNCSEGSVKTHYHRAIQGLRASLAHL 200
+ A +M C G+V++ RA + + +L L
Sbjct 158 EDIASVMQCPVGTVRSRIFRAREAIDKALQPL 189
>Q93D72 RNA polymerase sigma factor [Pseudomonas fluorescens]
Length=193
Score = 43.5 bits (101), Expect = 9e-09
Identities = 39/152 (26%), Positives = 67/152 (44%), Gaps = 16/152 (11%)
Query 56 AMDLVQEAFIALHKSYADKATDE-WYPLFYTILNNKLQDWRRKEARR--SNPFSFFKKVS 112
A D+ QEAFI +++ + D +Y Y I N +++ RR + S
Sbjct 47 AQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEF 106
Query 113 LDSDEEVTDVVDETTPNPFEFLDQAVTIEEIQAA----IAQLPVRQQQAFMLRAWEGFDT 168
D D + D+ E ++A+ +EI+ I QLP + A LR ++G
Sbjct 107 YDGDHGLKDL---------ESPERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSY 157
Query 169 QTTAQIMNCSEGSVKTHYHRAIQGLRASLAHL 200
+ A +M C G+V++ RA + + +L L
Sbjct 158 EDIASVMQCPVGTVRSRIFRAREAIDKALQPL 189
>A5JL21 RNA polymerase sigma factor [Pseudomonas aeruginosa]
Length=193
Score = 43.1 bits (100), Expect = 1e-08
Identities = 41/153 (27%), Positives = 65/153 (42%), Gaps = 18/153 (12%)
Query 56 AMDLVQEAFIALHKSYADKATDE-WYPLFYTILNNKLQDWRRKEARRSNPFSFFKKVSLD 114
A D+ QEAFI +++ + D +Y Y I N ++ RR D
Sbjct 47 AQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKNHLVARGRRPP----------D 96
Query 115 SDEEVTDVV---DETTPNPFEFLDQAVTIEEIQAA----IAQLPVRQQQAFMLRAWEGFD 167
SD D + E ++A+ +EI+A I QLP + A LR +EG
Sbjct 97 SDVTAEDAEFFEGDHALKDIESPERAMLRDEIEATVHQTIQQLPEDLRTALTLREFEGLS 156
Query 168 TQTTAQIMNCSEGSVKTHYHRAIQGLRASLAHL 200
+ A +M C G+V++ RA + + +L L
Sbjct 157 YEDIATVMQCPVGTVRSRIFRAREAIDKALQPL 189
Lambda K H a alpha
0.320 0.131 0.381 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 737460
Database: 3e74e0a5b012de72268bfed2fecc9307.TrEMBL.fasta
Posted date: May 12, 2024 9:32 PM
Number of letters in database: 5,542
Number of sequences in database: 28
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
