BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: baf9a1af49568888940a9eaeef16d534.SwissProt.fasta
           2 sequences; 719 total letters



Query= ACIAD2628

Length=107
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A8FYV3 DNA polymerase IV [Shewanella sediminis (strain HAW-EB3)]      37.0    5e-08
A3QGY9 DNA polymerase IV [Shewanella loihica (strain ATCC BAA-108...  34.3    4e-07


>A8FYV3 DNA polymerase IV [Shewanella sediminis (strain HAW-EB3)]
Length=360

 Score = 37.0 bits (84),  Expect = 5e-08
 Identities = 19/74 (26%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query  29   THVLEKIKEEPKSYYSLWKMSGFALAAAITGFVILPNSVDMTEKPQNQVIVTPKLSPQMV  88
            T + E I++E      +++++G   +A I     L        KP  Q ++TP + P  V
Sbjct  120  TLIAEAIRQE------IFELTGLTASAGIAPIKFLAKIASDLNKPNGQYVITPNMIPAFV  173

Query  89   EDFEMLSVLGEDKV  102
            +D  ++ + G  KV
Sbjct  174  KDLPLIKIPGVGKV  187


>A3QGY9 DNA polymerase IV [Shewanella loihica (strain ATCC BAA-1088 
/ PV-4)]
Length=359

 Score = 34.3 bits (77),  Expect = 4e-07
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query  29   THVLEKIKEEPKSYYSLWKMSGFALAAAITGFVILPNSVDMTEKPQNQVIVTPKLSPQMV  88
            T + E I+ E      +++++G   +A I     L        KP  Q ++TP++ P+ V
Sbjct  120  TLIAEAIRRE------IFEVTGLTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFV  173

Query  89   EDFEMLSVLGEDKV  102
            +   ++ + G  KV
Sbjct  174  KTLALIKIPGVGKV  187



Lambda      K        H        a         alpha
   0.321    0.134    0.393    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 55693


  Database: baf9a1af49568888940a9eaeef16d534.SwissProt.fasta
    Posted date:  May 10, 2024  4:19 PM
  Number of letters in database: 719
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40