BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: fdb244449864a4e0e8d5d52fc6702bcd.SwissProt.fasta
4 sequences; 3,926 total letters
Query= ACIAD2665
Length=341
Score E
Sequences producing significant alignments: (Bits) Value
Q27710 Catalase [Onchocerca volvulus endobacterium] 39.7 6e-07
Q9S2C0 Serine/threonine-protein kinase PksC [Streptomyces coelico... 36.2 8e-06
Q8Y7G1 DNA polymerase III PolC-type [Listeria monocytogenes serov... 35.8 1e-05
Q720A2 DNA polymerase III PolC-type [Listeria monocytogenes serot... 35.8 1e-05
>Q27710 Catalase [Onchocerca volvulus endobacterium]
Length=482
Score = 39.7 bits (91), Expect = 6e-07
Identities = 29/107 (27%), Positives = 51/107 (48%), Gaps = 7/107 (7%)
Query 174 PFSTSTTPRSNAGADNTNIFGQSVGGGAAPTAAPFGTAYSNSGNQLPDGTEPAAFLRIAR 233
P + +P ++ D + FG + GGAAP P +Y+++ Q P EPA L A
Sbjct 354 PVNAPRSPVNSYQRDGSMAFGSN--GGAAPNYEP--NSYADAPKQAPQYAEPALALSGAA 409
Query 234 QRFNHIQSVNSASNIEEIRRYLTPDLYASMYSDI---MANQDQDVAE 277
R++H + + S+ + R + + A + ++I MA DV +
Sbjct 410 DRYDHREDTDYYSHAGALFRLMNDEQKALLINNIAGAMAGVSSDVVQ 456
>Q9S2C0 Serine/threonine-protein kinase PksC [Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145)]
Length=556
Score = 36.2 bits (82), Expect = 8e-06
Identities = 37/140 (26%), Positives = 53/140 (38%), Gaps = 11/140 (8%)
Query 51 APSQSYQQPRQATPAPQTAPAGTPQRS--GPGVGSMVAAGVAGAAVGAIAAN--ALADDK 106
AP+ Q P Q TP+P P GTP + P G AG A A A
Sbjct 326 APTGPVQTPYQPTPSPGPNPYGTPAPAAHSPAYGYPQQAGYQTPAPAPYAQQQAAATPPP 385
Query 107 HSTSPEQQAAQQATQAQQQEEKKGGLPGWIWIVLIAAIAFFIFRRFGAKKKLAGNNPYAP 166
++ +P Q + + K P I +++A +A + GA G +
Sbjct 386 YNLTPSAQGSGSGSPG-----GKSNKPVIIGSIVVAVVA--VGGLIGALLMNGGGDEDPE 438
Query 167 NNAGGSTPFSTSTTPRSNAG 186
GGS+ S S +P AG
Sbjct 439 AGGGGSSTASVSASPSKAAG 458
Score = 30.0 bits (66), Expect = 7e-04
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query 30 APLAEAKRAGGGKSHGMSRSAAPSQSYQQPRQATPAPQTAPAGTPQRSGPG--------- 80
AP A + G + G ++ AP+ QQ ATP P TP G G
Sbjct 350 APAAHSPAYGYPQQAGY-QTPAPAPYAQQQAAATPPPYNL---TPSAQGSGSGSPGGKSN 405
Query 81 ----VGSMVAAGVA-GAAVGAIAANALADD 105
+GS+V A VA G +GA+ N D+
Sbjct 406 KPVIIGSIVVAVVAVGGLIGALLMNGGGDE 435
Score = 23.5 bits (49), Expect = 0.082
Identities = 14/37 (38%), Positives = 21/37 (57%), Gaps = 0/37 (0%)
Query 19 ITGIMMAALVIAPLAEAKRAGGGKSHGMSRSAAPSQS 55
+ G++ A L+ E AGGG S S SA+PS++
Sbjct 420 VGGLIGALLMNGGGDEDPEAGGGGSSTASVSASPSKA 456
Score = 20.8 bits (42), Expect = 0.57
Identities = 10/21 (48%), Positives = 11/21 (52%), Gaps = 0/21 (0%)
Query 65 APQTAPAGTPQRSGPGVGSMV 85
AP + G SG GVGS V
Sbjct 296 APPSIVPGAQTSSGAGVGSAV 316
>Q8Y7G1 DNA polymerase III PolC-type [Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e)]
Length=1444
Score = 35.8 bits (81), Expect = 1e-05
Identities = 29/95 (31%), Positives = 43/95 (45%), Gaps = 12/95 (13%)
Query 194 GQSVGGGAAPTAAPFGTAYSNSGNQLPDGTEPAAFLRI-ARQRFNHIQSVNSASNIEEIR 252
GQS GGGAAP PF Y ++ D E I +R +Q + A+ I E+R
Sbjct 208 GQSGGGGAAPLTGPFQIGY-----KIKDDEEVKRLGDIYDEERRITVQGLIFATEIRELR 262
Query 253 ------RYLTPDLYASMYSDIMANQDQDVAEFSNL 281
++ D +SM + + ++D A F NL
Sbjct 263 SGRSLLQFKITDYTSSMIIKMFSRDNEDAAMFQNL 297
Score = 16.9 bits (32), Expect = 9.4
Identities = 6/15 (40%), Positives = 9/15 (60%), Gaps = 0/15 (0%)
Query 207 PFGTAYSNSGNQLPD 221
PF T G+++PD
Sbjct 959 PFETFLGFKGDKVPD 973
>Q720A2 DNA polymerase III PolC-type [Listeria monocytogenes serotype
4b (strain F2365)]
Length=1444
Score = 35.8 bits (81), Expect = 1e-05
Identities = 29/95 (31%), Positives = 43/95 (45%), Gaps = 12/95 (13%)
Query 194 GQSVGGGAAPTAAPFGTAYSNSGNQLPDGTEPAAFLRI-ARQRFNHIQSVNSASNIEEIR 252
GQS GGGAAP PF Y ++ D E I +R +Q + A+ I E+R
Sbjct 208 GQSGGGGAAPLTGPFQIGY-----KIKDDEEVKRLGDIYDEERRITVQGLIFATEIRELR 262
Query 253 ------RYLTPDLYASMYSDIMANQDQDVAEFSNL 281
++ D +SM + + ++D A F NL
Sbjct 263 SGRSLLQFKITDYTSSMIIKMFSRDNEDAAMFQNL 297
Score = 16.9 bits (32), Expect = 9.4
Identities = 6/15 (40%), Positives = 9/15 (60%), Gaps = 0/15 (0%)
Query 207 PFGTAYSNSGNQLPD 221
PF T G+++PD
Sbjct 959 PFETFLGFKGDKVPD 973
Lambda K H a alpha
0.315 0.129 0.375 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1103890
Database: fdb244449864a4e0e8d5d52fc6702bcd.SwissProt.fasta
Posted date: Jun 3, 2024 6:06 AM
Number of letters in database: 3,926
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
