Comparative Genomics

ACIAD2675 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: bae9ede1a9a8940d568ae656c05540ee.SwissProt.fasta
           8 sequences; 3,248 total letters



Query= ACIAD2675

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

O06834 Styrene monooxygenase StyA [Pseudomonas fluorescens]           158     9e-48
O50214 Styrene monooxygenase StyA [Pseudomonas sp]                    154     3e-46
Q981X2 D-amino acid dehydrogenase 3 [Mesorhizobium japonicum (str...  36.6    6e-06
Q8X645 NAD-dependent dihydropyrimidine dehydrogenase subunit PreT...  36.6    6e-06
P76440 NAD-dependent dihydropyrimidine dehydrogenase subunit PreT...  36.6    6e-06
Q8ZNL8 NAD-dependent dihydropyrimidine dehydrogenase subunit PreT...  35.8    1e-05
Q8Z5A6 NAD-dependent dihydropyrimidine dehydrogenase subunit PreT...  35.8    1e-05
Q99042 D-amino-acid oxidase [Trigonopsis variabilis]                  35.4    1e-05


>O06834 Styrene monooxygenase StyA [Pseudomonas fluorescens]
Length=415

 Score = 158 bits (400),  Expect = 9e-48
 Identities = 119/396 (30%), Positives = 186/396 (47%), Gaps = 16/396 (4%)

Query  1    MMRRIAIVGAGQSGLQLGLSLLDTGYDVTIVTNRTADQIRQGKVMSSQCMFHTALQTERD  60
            M +RI IVGAG +GL LGL L     DVT+ T+R  D+    +++++  + H A+  +R+
Sbjct  1    MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNT--VAHHAVTVQRE  58

Query  61   VGLNFWEEQCPAVEGIGFTLVSPETGKPAFSWSARLERYAQSVDQRVKMPYWIEEFERRG  120
            V L+    + P+ E   F       G     +   L+  +++VD R+  P  +   E RG
Sbjct  59   VALDV--NEWPSEEFGYFGHYYYVGGSQPMRFYGDLKAPSRAVDYRLYQPMLMRALEARG  116

Query  121  GKLIIQDVGIDELEQLTTEYELVLLAAGKGEVVKQFVRDDERSTFDKPQRALALTYVTGM  180
            GK    DV  ++LE L+ +Y+L+++  GK  + K F +  E S F+KPQRAL +    G+
Sbjct  117  GKSCYDDVSTEDLEGLSEQYDLLVVCTGKNALGKVFEKQSENSPFEKPQRALCVGLFKGI  176

Query  181  KPMSPYSRVTFNVIPGVGEYFCFPALTVTGPCEIMVFEGIPGGPMDCWQDAK---TPEQH  237
            K  +P   VT +  PG GE    P L+  G    +V E   G  ++     K    P   
Sbjct  177  KE-APIRAVTMSFSPGHGELIEIPTLSFNGMSTALVLENHIGSDLEVLAHTKYDDDPRAF  235

Query  238  LQMSKDILNTYLPWEAERCENIEITDAGG---YLAGRFPPSVRKPILTLPSGRQVFGMAD  294
            L +  + L  + P  AER +  E   A      L G   P+ R    TL +G+ + G+ D
Sbjct  236  LDLMLEKLRKHHPSVAERIDPAEFDLANSSLDILQGGVVPAFRDGHATLSNGKTIIGLGD  295

Query  295  ALVVNDPITGQGSNNAAKCSKIYFDAILAHDTQSFTPEWMQQTFERYWSYAEKVVAWTN-  353
                 DP+ GQG+N A+  + I  + ILAH    +   + +    R          WTN 
Sbjct  296  VQATVDPVLGQGANMASHAAWILGEEILAHSV--YDLRFSEHLERRRQDRVLCATRWTNF  353

Query  354  --SLLVPPQPQMIDVLAAASQNQAIASTIANNFDDP  387
              S L    P+ +  L   SQ++ +A    +NF+ P
Sbjct  354  ILSALSALPPEFLAFLQILSQSREMADEFTDNFNYP  389


>O50214 Styrene monooxygenase StyA [Pseudomonas sp]
Length=415

 Score = 154 bits (389),  Expect = 3e-46
 Identities = 118/396 (30%), Positives = 185/396 (47%), Gaps = 16/396 (4%)

Query  1    MMRRIAIVGAGQSGLQLGLSLLDTGYDVTIVTNRTADQIRQGKVMSSQCMFHTALQTERD  60
            M +RI IVGAG +GL LGL L     DVT+ T+R  D+    +++++  + H A+  +R+
Sbjct  1    MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNT--VAHNAVTVQRE  58

Query  61   VGLNFWEEQCPAVEGIGFTLVSPETGKPAFSWSARLERYAQSVDQRVKMPYWIEEFERRG  120
            V L+    + P+ E   F       G     +   L+  +++VD R+  P  +   E RG
Sbjct  59   VALDV--NEWPSEEFGYFGHYYYVGGPQPMRFYGDLKAPSRAVDYRLYQPMLMRALEARG  116

Query  121  GKLIIQDVGIDELEQLTTEYELVLLAAGKGEVVKQFVRDDERSTFDKPQRALALTYVTGM  180
            GK     V  ++LE L+ +Y+L+++  GK  + K F +  E S F+KPQRAL +    G+
Sbjct  117  GKFCYDAVSAEDLEGLSEQYDLLVVCTGKYALGKVFEKQSENSPFEKPQRALCVGLFKGI  176

Query  181  KPMSPYSRVTFNVIPGVGEYFCFPALTVTGPCEIMVFEGIPGGPMDCWQDAK---TPEQH  237
            K  +P   VT +  PG GE    P L+  G    +V E   G  ++     K    P   
Sbjct  177  KE-APIRAVTMSFSPGHGELIEIPTLSFNGMSTALVLENHIGSDLEVLAHTKYDDDPRAF  235

Query  238  LQMSKDILNTYLPWEAERCENIEITDAGG---YLAGRFPPSVRKPILTLPSGRQVFGMAD  294
            L +  + L  + P  AER +  E   A      L G   P+ R    TL +G+ + G+ D
Sbjct  236  LDLMLEKLGKHHPSVAERIDPAEFDLANSSLDILQGGVVPAFRDGHATLNNGKTIIGLGD  295

Query  295  ALVVNDPITGQGSNNAAKCSKIYFDAILAHDTQSFTPEWMQQTFERYWSYAEKVVAWTN-  353
                 DP+ GQG+N A+  + I  + ILAH    +   + +    R          WTN 
Sbjct  296  IQATVDPVLGQGANMASYAAWILGEEILAHSV--YDLRFSEHLERRRQDRVLCATRWTNF  353

Query  354  --SLLVPPQPQMIDVLAAASQNQAIASTIANNFDDP  387
              S L    P+ +  L   SQ++ +A    +NF+ P
Sbjct  354  TLSALSALPPEFLAFLQILSQSREMADEFTDNFNYP  389


>Q981X2 D-amino acid dehydrogenase 3 [Mesorhizobium japonicum 
(strain LMG 29417 / CECT 9101 / MAFF 303099)]
Length=412

 Score = 36.6 bits (83),  Expect = 6e-06
 Identities = 15/33 (45%), Positives = 23/33 (70%), Gaps = 0/33 (0%)

Query  2   MRRIAIVGAGQSGLQLGLSLLDTGYDVTIVTNR  34
           M +I ++GAG +G+    +LL+ GYDVT+V  R
Sbjct  1   MPKIVVIGAGIAGVSTAYALLEQGYDVTVVERR  33


 Score = 18.1 bits (35),  Expect = 3.9
 Identities = 9/21 (43%), Positives = 13/21 (62%), Gaps = 2/21 (10%)

Query  179  GMKPMSP--YSRVTFNVIPGV  197
            G++PM P    RV  + +PGV
Sbjct  355  GLRPMMPNMMPRVGKSRVPGV  375


>Q8X645 NAD-dependent dihydropyrimidine dehydrogenase subunit 
PreT [Escherichia coli O157:H7]
Length=412

 Score = 36.6 bits (83),  Expect = 6e-06
 Identities = 15/27 (56%), Positives = 22/27 (81%), Gaps = 0/27 (0%)

Query  4    RIAIVGAGQSGLQLGLSLLDTGYDVTI  30
            ++AI+GAG +GLQ  ++L + GYDVTI
Sbjct  126  KVAIIGAGPAGLQASVTLTNQGYDVTI  152


>P76440 NAD-dependent dihydropyrimidine dehydrogenase subunit 
PreT [Escherichia coli (strain K12)]
Length=412

 Score = 36.6 bits (83),  Expect = 6e-06
 Identities = 15/27 (56%), Positives = 22/27 (81%), Gaps = 0/27 (0%)

Query  4    RIAIVGAGQSGLQLGLSLLDTGYDVTI  30
            ++AI+GAG +GLQ  ++L + GYDVTI
Sbjct  126  KVAIIGAGPAGLQASVTLTNQGYDVTI  152


>Q8ZNL8 NAD-dependent dihydropyrimidine dehydrogenase subunit 
PreT [Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=413

 Score = 35.8 bits (81),  Expect = 1e-05
 Identities = 15/27 (56%), Positives = 21/27 (78%), Gaps = 0/27 (0%)

Query  4    RIAIVGAGQSGLQLGLSLLDTGYDVTI  30
            ++AI+GAG +GLQ  ++L   GYDVTI
Sbjct  126  KVAIIGAGPAGLQASVTLTHLGYDVTI  152


>Q8Z5A6 NAD-dependent dihydropyrimidine dehydrogenase subunit 
PreT homolog [Salmonella typhi]
Length=413

 Score = 35.8 bits (81),  Expect = 1e-05
 Identities = 15/27 (56%), Positives = 21/27 (78%), Gaps = 0/27 (0%)

Query  4    RIAIVGAGQSGLQLGLSLLDTGYDVTI  30
            ++AI+GAG +GLQ  ++L   GYDVTI
Sbjct  126  KVAIIGAGPAGLQASVTLTHLGYDVTI  152


>Q99042 D-amino-acid oxidase [Trigonopsis variabilis]
Length=356

 Score = 35.4 bits (80),  Expect = 1e-05
 Identities = 17/41 (41%), Positives = 25/41 (61%), Gaps = 0/41 (0%)

Query  2   MRRIAIVGAGQSGLQLGLSLLDTGYDVTIVTNRTADQIRQG  42
           M +I ++GAG +GL   L LL  G++VTIV+  T   +  G
Sbjct  1   MAKIVVIGAGVAGLTTALQLLRKGHEVTIVSEFTPGDLSIG  41


 Score = 18.9 bits (37),  Expect = 2.2
 Identities = 7/13 (54%), Positives = 9/13 (69%), Gaps = 0/13 (0%)

Query  203  FPALTVTGPCEIM  215
            FP LT  GP +I+
Sbjct  283  FPELTKDGPLDIV  295



Lambda      K        H        a         alpha
   0.321    0.135    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1065672


  Database: bae9ede1a9a8940d568ae656c05540ee.SwissProt.fasta
    Posted date:  Jun 2, 2024  4:27 PM
  Number of letters in database: 3,248
  Number of sequences in database:  8



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40