BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 63fb707b05fa956e4c3fe715722642c2.SwissProt.fasta
8 sequences; 4,331 total letters
Query= ACIAD2691
Length=170
Score E
Sequences producing significant alignments: (Bits) Value
Q9I749 Type VI secretion system sheath protein TssB1 [Pseudomonas... 120 2e-38
Q8TXI4 DNA double-strand break repair Rad50 ATPase [Methanopyrus ... 38.5 4e-07
Q60389 Uncharacterized protein MJ0079 [Methanocaldococcus jannasc... 36.2 2e-06
Q6A8L0 Probable transcriptional regulatory protein PPA1157 [Cutib... 34.7 6e-06
A5ILG0 DNA mismatch repair protein MutS [Thermotoga petrophila (s... 34.7 8e-06
Q8D1W6 Aspartate carbamoyltransferase regulatory chain [Wiggleswo... 33.5 9e-06
B1LAW3 DNA mismatch repair protein MutS [Thermotoga sp. (strain R... 33.9 1e-05
Q7U3T3 Chaperone protein ClpB 2 [Parasynechococcus marenigrum (st... 23.9 0.027
>Q9I749 Type VI secretion system sheath protein TssB1 [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=172
Score = 120 bits (301), Expect = 2e-38
Identities = 61/162 (38%), Positives = 101/162 (62%), Gaps = 1/162 (1%)
Query 3 MAKRESVQKKLQRIRPPRVQLTYDVEIGDGKEAKELPFVVGVMGDFSAASELEKTKLKDK 62
M S QK + R R PRVQ+ YDVE+ ++ +LPFV+GVM D + + + D+
Sbjct 1 MGSTTSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPAEPQAAVADR 60
Query 63 KFINVDLDNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQDFSPEQITQQVEPL 122
KF+ +D+DN D +++M PR AF+V N LT E G +++D+TF SM DFSP + ++V+ L
Sbjct 61 KFLEIDVDNFDARLKAMKPRVAFNVPNVLTGE-GNLSLDITFESMDDFSPAAVARKVDSL 119
Query 123 RKLVEARERLTDLRNKISNNERLEDLLDEVLKNTDQVRKLSA 164
KL+EAR +L +L + E+++ + +K+ ++ L++
Sbjct 120 NKLLEARTQLANLLTYMDGKTGAEEMIMKAIKDPALLQALAS 161
>Q8TXI4 DNA double-strand break repair Rad50 ATPase [Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)]
Length=876
Score = 38.5 bits (88), Expect = 4e-07
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 14/160 (9%)
Query 9 VQKKLQRIRPPRVQLTYDVEIGDGKEAKELPFVVGVMGDF-SAASELEKTKLKDKKFINV 67
++ K++ ++ R L VE +GKEA+ + +GD S ELE + + ++ I
Sbjct 249 LENKIESLKGRRDDLRKLVE--EGKEAER---ELQRLGDVPSKVRELENEEAELRRRIE- 302
Query 68 DLDNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQDFSPEQITQQVEPLRKLVE 127
+L N+ D ++S+ R +E+ E G V ++D + + VE K+VE
Sbjct 303 ELRNLLDDLRSLRNR----LESAEEELEG---VKRELEELKDEAGVDPERLVEFKDKIVE 355
Query 128 ARERLTDLRNKISNNERLEDLLDEVLKNTDQVRKLSAEVD 167
A ERL DLR + +LE + DE+ + D+ L +E +
Sbjct 356 ASERLRDLRREEELKRKLEKVSDELSELGDREETLQSEYE 395
Score = 30.0 bits (66), Expect = 3e-04
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query 53 ELEKTKLKDKKFINVDLDNIDDVMQSM--APRAAFDVENTLTEEGGRM----NVDLTFNS 106
ELE+T + +K I ++DV + + V L E G + N++
Sbjct 558 ELERTLDRCEKVIGRTPSGVEDVEEELRRLEEERDHVGQKLREAEGELERYHNLEEKVKR 617
Query 107 MQDFSPE--QITQQVEPLRKLVEARER-LTDLRNKISNNERLEDLLDEVLKNTDQVRKLS 163
++ E +I + +E + +E ER L LR + + +RLE+ L+ V K ++VR
Sbjct 618 AREARKELKRIERDLEDAKGRLEQVERNLEGLRERYGSEDRLEEELESVEKKYERVRDKL 677
Query 164 AEV 166
+EV
Sbjct 678 SEV 680
Score = 25.4 bits (54), Expect = 0.009
Identities = 23/81 (28%), Positives = 42/81 (52%), Gaps = 11/81 (14%)
Query 92 TEEGGRMNVDLTFNSMQDFSPEQITQQVEPLRKLVEA-----RERLTDLRNKISNNERLE 146
T E + VD T + +F ++ +Q L ++ EA RER+ DL+ +R+E
Sbjct 149 TREERKRIVDRTLG-LAEF--KKAREQAHELLRVAEAKLETFRERVRDLKGSKKELKRVE 205
Query 147 DLLDEVLKNTDQVRKLSAEVD 167
L+E+ + +V++L EV+
Sbjct 206 RELEELKR---EVKELEPEVE 223
Score = 25.0 bits (53), Expect = 0.011
Identities = 19/61 (31%), Positives = 31/61 (51%), Gaps = 8/61 (13%)
Query 113 EQITQQVEPLRKLVEA-RERLTDLRNKISNNER-------LEDLLDEVLKNTDQVRKLSA 164
E++ ++V+ L VE +ERL +LR ER LE+ ++ + D +RKL
Sbjct 209 EELKREVKELEPEVEELKERLNELREAKREFERLEGELRLLENKIESLKGRRDDLRKLVE 268
Query 165 E 165
E
Sbjct 269 E 269
Score = 24.3 bits (51), Expect = 0.020
Identities = 16/55 (29%), Positives = 28/55 (51%), Gaps = 1/55 (2%)
Query 113 EQITQQVEPLRKLVEARERL-TDLRNKISNNERLEDLLDEVLKNTDQVRKLSAEV 166
EQ+ + +E LR+ + +RL +L + ER+ D L EV + + K E+
Sbjct 640 EQVERNLEGLRERYGSEDRLEEELESVEKKYERVRDKLSEVKGRLNGMEKRREEL 694
Score = 23.5 bits (49), Expect = 0.036
Identities = 38/184 (21%), Positives = 82/184 (45%), Gaps = 39/184 (21%)
Query 3 MAKRESVQKKLQRIRPPRVQLTYDVEIGDGKEAKELPFVVGVMGDFSAASELEKTKLKDK 62
+ + E +++KL+++ +L+ E+GD +E + + EL++ ++K+K
Sbjct 363 LRREEELKRKLEKVSD---ELS---ELGDREETLQSEYEELQERLDEIQGELKEIRVKEK 416
Query 63 KFINVDLDNIDDVMQS--------------MAPRAAFDVENTLTEEGGRMNVDLTFNSMQ 108
+ L+ I+ + ++ A + D E L GR +
Sbjct 417 EL----LERIESLREAEGECPVCLRKLPRERAEKLLRDAEKELERLQGR---------EE 463
Query 109 DFSPE--QITQQVEPLRKLVE-ARERLTDLRNKISNNERLEDLLDEVLKNTDQVRKLSAE 165
D E ++ ++E +R+ +E +ER+ LR + E LE L+E+ + +++ LS E
Sbjct 464 DLRKERRELKDRLESVRRELEGTKERMWRLRER---REELERELEEIEELKEELADLSRE 520
Query 166 VDHE 169
+ E
Sbjct 521 LGVE 524
Score = 22.7 bits (47), Expect = 0.064
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 22/100 (22%)
Query 70 DNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQDFSPEQITQQVEPLRKLVEAR 129
D +++ ++S+ + V + L+E GR+N + E++ +QV RK EA+
Sbjct 657 DRLEEELESVEKKYE-RVRDKLSEVKGRLNG-------MEKRREELKKQV---RKYREAK 705
Query 130 ERLTDLRNKISNNERLEDLLDEVLKNTDQVRKLSAEVDHE 169
ER ERLE ++ EVL +V + S +V E
Sbjct 706 ER----------KERLERVV-EVLSLCKEVFRYSRDVARE 734
Score = 20.4 bits (41), Expect = 0.35
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 26/133 (20%)
Query 55 EKTKLKDK-KFINVDLDNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQDFSPE 113
E+ +LKD+ + + +L+ + M + R ++E L E ++ + D S E
Sbjct 468 ERRELKDRLESVRRELEGTKERMWRLRERRE-ELERELEE------IEELKEELADLSRE 520
Query 114 QITQQ--VEPLRKL-VEARERLTDLRNKISNNERLEDLLDEVLKNTDQV----------- 159
++ + LR L V A L DL + + RLE L+ L ++V
Sbjct 521 LGVEEDRLPELRDLAVRAESLLRDLERRRGDVLRLEKELERTLDRCEKVIGRTPSGVEDV 580
Query 160 ----RKLSAEVDH 168
R+L E DH
Sbjct 581 EEELRRLEEERDH 593
Score = 19.6 bits (39), Expect = 0.62
Identities = 7/11 (64%), Positives = 10/11 (91%), Gaps = 0/11 (0%)
Query 7 ESVQKKLQRIR 17
ESV+KK +R+R
Sbjct 664 ESVEKKYERVR 674
Score = 18.5 bits (36), Expect = 1.5
Identities = 6/14 (43%), Positives = 11/14 (79%), Gaps = 0/14 (0%)
Query 139 ISNNERLEDLLDEV 152
++++E LED DE+
Sbjct 846 VTHDEELEDAADEL 859
>Q60389 Uncharacterized protein MJ0079 [Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440)]
Length=380
Score = 36.2 bits (82), Expect = 2e-06
Identities = 25/98 (26%), Positives = 47/98 (48%), Gaps = 11/98 (11%)
Query 70 DNIDDVMQSMAPRAAFDVENTLTEEG-------GRMNVDLTFNSMQDFSP--EQITQQVE 120
D+IDD++ + + FD+ N E+ + +L + ++ + + +E
Sbjct 273 DDIDDIL--IVSKVIFDITNKYAEQVLDKAEIIKNLKNELKYIDIKKIGECKKDYNKLIE 330
Query 121 PLRKLVEARERLTDLRNKISNNERLEDLLDEVLKNTDQ 158
L K+ R L +RN+ N+R D +DEV+K TD+
Sbjct 331 ILCKMAYIRLELKKIRNEAIINKRKTDFIDEVIKETDE 368
>Q6A8L0 Probable transcriptional regulatory protein PPA1157 [Cutibacterium
acnes (strain DSM 16379 / KPA171202)]
Length=264
Score = 34.7 bits (78), Expect = 6e-06
Identities = 36/141 (26%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query 2 TMAKRESVQKKLQRIRPPRVQLTYDVEIGDGKEAKELPFVVGVMGDFSAASELEKTKLKD 61
TMA SVQ+ QR V TY+VE G E +E+ +L + +
Sbjct 124 TMADGGSVQRLFQRKGVVSVSKTYEVEEGRKTETREVD-----------EDQLMEATIDA 172
Query 62 KKFINVDLDNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQ-DFSPEQITQQVE 120
+ VD + +++ P A DV + +G ++ D S + DF+ +
Sbjct 173 EPEDIVDEGEVFEIISD--PSAVVDVRKAV--QGAGIDYDSAEVSFKPDFTQRVELEDAR 228
Query 121 PLRKLVEARERLTDLRNKISN 141
L ++++A E L D++N SN
Sbjct 229 KLYRILDALEDLDDVQNVFSN 249
Score = 22.7 bits (47), Expect = 0.054
Identities = 24/74 (32%), Positives = 33/74 (45%), Gaps = 6/74 (8%)
Query 82 RAAFDVENTLTEEGGRM----NVDLTFNSMQDFSPEQITQQVEPLRKLVEARERLTDLRN 137
RA DV +T GG M +V F S + T +VE RK E RE D
Sbjct 109 RAVSDVRVAVTRNGGTMADGGSVQRLFQRKGVVSVSK-TYEVEEGRK-TETREVDEDQLM 166
Query 138 KISNNERLEDLLDE 151
+ + + ED++DE
Sbjct 167 EATIDAEPEDIVDE 180
Score = 16.2 bits (30), Expect = 7.4
Identities = 7/16 (44%), Positives = 11/16 (69%), Gaps = 0/16 (0%)
Query 130 ERLTDLRNKISNNERL 145
E LTD RN+ ++ R+
Sbjct 101 ECLTDNRNRAVSDVRV 116
>A5ILG0 DNA mismatch repair protein MutS [Thermotoga petrophila
(strain ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1)]
Length=793
Score = 34.7 bits (78), Expect = 8e-06
Identities = 27/81 (33%), Positives = 41/81 (51%), Gaps = 3/81 (4%)
Query 85 FDV-ENTLTEEGGRMNVDLTFNSMQDFSPEQITQQVEPLRKLVEARERLTDLRNKISNNE 143
FDV NT T G R+ + + D +QI +++E + KLV R L +LR+ +SN
Sbjct 272 FDVLNNTETPMGARLLKKWILHPLVD--RKQIEERLETVEKLVSDRMNLEELRDLLSNVR 329
Query 144 RLEDLLDEVLKNTDQVRKLSA 164
+E ++ V N R L A
Sbjct 330 DVERIVSRVEYNRSVPRDLVA 350
Score = 23.5 bits (49), Expect = 0.036
Identities = 12/43 (28%), Positives = 26/43 (60%), Gaps = 5/43 (12%)
Query 124 KLVEARERLTDLRNKISNNERLEDLLDEVLKNTDQVRKLSAEV 166
K++ A+ER+ +L ++ N + +EV K+ + + K+S E+
Sbjct 489 KIMAAKERIEELEKELFKN-----VCEEVKKHKEILLKISEEL 526
Score = 20.8 bits (42), Expect = 0.26
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query 62 KKFINVDLDNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQDFSPE-------Q 114
K+ + +LD D+++ R + E + G + + +N + + E +
Sbjct 403 KRGFSPELDEYRDLLEHAEERLK-EFEEKERKRTGIQKLKVGYNQVFGYYIEVTKANLDK 461
Query 115 ITQQVEPLRKLVEARERLT----DLRNKI-SNNERLEDLLDEVLKNT-DQVRK 161
I E + LV + +T + KI + ER+E+L E+ KN ++V+K
Sbjct 462 IPDDYERKQTLVNSERFITPELKEFETKIMAAKERIEELEKELFKNVCEEVKK 514
>Q8D1W6 Aspartate carbamoyltransferase regulatory chain [Wigglesworthia
glossinidia brevipalpis]
Length=153
Score = 33.5 bits (75), Expect = 9e-06
Identities = 23/70 (33%), Positives = 39/70 (56%), Gaps = 3/70 (4%)
Query 97 RMNVDLTFN-SMQDFSPEQITQQVEPLRKLVEARERLTDLRNKISNNERLEDL--LDEVL 153
++ V+ F ++ D P Q+ ++ L K + +ER+T N SN ++ +DL L+ VL
Sbjct 6 KLQVEAIFGGTVIDHIPAQVGLKLLSLFKWLHTKERITMGLNLPSNQQKKKDLIKLENVL 65
Query 154 KNTDQVRKLS 163
N DQ +LS
Sbjct 66 LNEDQANQLS 75
>B1LAW3 DNA mismatch repair protein MutS [Thermotoga sp. (strain
RQ2)]
Length=793
Score = 33.9 bits (76), Expect = 1e-05
Identities = 26/81 (32%), Positives = 41/81 (51%), Gaps = 3/81 (4%)
Query 85 FDV-ENTLTEEGGRMNVDLTFNSMQDFSPEQITQQVEPLRKLVEARERLTDLRNKISNNE 143
FDV NT T G R+ + + D +QI +++E + +LV R L ++RN +SN
Sbjct 272 FDVLNNTETPMGARLLKKWILHPLVD--RKQIEERLEAVERLVNDRVSLEEMRNFLSNVR 329
Query 144 RLEDLLDEVLKNTDQVRKLSA 164
+E ++ V N R L A
Sbjct 330 DVERIVSRVEYNRSVPRDLVA 350
Score = 21.6 bits (44), Expect = 0.15
Identities = 10/43 (23%), Positives = 26/43 (60%), Gaps = 5/43 (12%)
Query 124 KLVEARERLTDLRNKISNNERLEDLLDEVLKNTDQVRKLSAEV 166
K++ A+ER+ ++ ++ + + +EV K+ + + KLS ++
Sbjct 489 KIMAAKERIEEMEKEL-----FKSVCEEVKKHKEVLLKLSEDL 526
Score = 17.7 bits (34), Expect = 2.6
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 6/47 (13%)
Query 115 ITQQVEPLRKLVEARERLTDLR------NKISNNERLEDLLDEVLKN 155
+ + + LR+ +E +L ++ NK++ E L DLL +++
Sbjct 344 VPRDLVALRETLEIIPKLNEILSNFGVFNKLAFPEELVDLLRRAIED 390
>Q7U3T3 Chaperone protein ClpB 2 [Parasynechococcus marenigrum
(strain WH8102)]
Length=900
Score = 23.9 bits (50), Expect = 0.027
Identities = 36/184 (20%), Positives = 75/184 (41%), Gaps = 33/184 (18%)
Query 2 TMAKRESVQKKLQR--IRPPRVQLTYDVEIGDGKEAKELPFVVGVMGD-FSAASELEKTK 58
T+ K ++ ++ Q+ IR P ++L+ ++ G +E EL V + + A+ L
Sbjct 358 TVEKDPALNRRFQQVLIREPDLELSLEILRGL-RERYELHHGVTITDEAIQTANRLADRY 416
Query 59 LKDKKFINVDLDNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQDFSPEQITQQ 118
+ D+ + +D ID+ + + E V+L + ++ +PE+
Sbjct 417 ISDRCLPDKAIDLIDEAAAQLKIEVTSKPQVVEEAEADLRRVELALLAAEE-APEE---- 471
Query 119 VEPLRKLVEARERLTDLRNKISNNERLEDL-------------LDEVLKNTDQVRKLSAE 165
ER+ R ++ + RL+DL L ++L+ + +R AE
Sbjct 472 -----------ERIQLQRQRLEVSSRLDDLRRRWQEERTQLEELGQLLQQDEDLRHAIAE 520
Query 166 VDHE 169
+ E
Sbjct 521 AERE 524
Score = 16.9 bits (32), Expect = 4.5
Identities = 7/17 (41%), Positives = 11/17 (65%), Gaps = 0/17 (0%)
Query 143 ERLEDLLDEVLKNTDQV 159
ERL +L+EV ++ V
Sbjct 295 ERLRSVLEEVSRSDSGV 311
Lambda K H a alpha
0.317 0.134 0.359 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 521430
Database: 63fb707b05fa956e4c3fe715722642c2.SwissProt.fasta
Posted date: May 10, 2024 4:18 PM
Number of letters in database: 4,331
Number of sequences in database: 8
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40