BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: d9a3cc8d2f2df441ade4fa73def0cd84.SwissProt.fasta
2 sequences; 892 total letters
Query= ACIAD2696
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
Q9I753 Type VI secretion system baseplate component TssK1 [Pseudo... 163 2e-49
B9L5S9 L-seryl-tRNA(Sec) selenium transferase [Nautilia profundic... 37.7 9e-07
>Q9I753 Type VI secretion system baseplate component TssK1 [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=444
Score = 163 bits (412), Expect = 2e-49
Identities = 124/455 (27%), Positives = 217/455 (48%), Gaps = 26/455 (6%)
Query 6 KILWGEGLFLRPQHFQIQDSYHEQRLNQTIRATIPFAYGINQLRFDELQLGNHVLALESI 65
+++W EG+FLRPQHFQ D Y E ++ R+ + +G ++L+ D+ L LA+ S
Sbjct 6 RVVWSEGMFLRPQHFQQHDRYLETLVDGRCRSLLAGGWGFSELKLDDALLTQGKLAIVSA 65
Query 66 EMIWQDGEIYQAPSTDLLPEPLLLDDLNFKGEMLIYLTLPLLQPNKTNILHDGDDHRSGR 125
+ DG + P+ D P PL +++ G ++YL LPL + + + +G+ R
Sbjct 66 RGVLPDGTPFNIPADDPAPAPLNVEESLRDG--IVYLGLPLKRVGTRDTVEEGEALGGAR 123
Query 126 YHSHLTETHDLYTNAQAADITLLRRRAMFRLLAPLSEPQQEFDGL-LYLPLG--RIK-RQ 181
Y S + E D ++ L +A FRLL E DGL Y +G R++ ++
Sbjct 124 YVSQVQEVRDDNAAFESRAPVALGSQA-FRLLT-------ERDGLGEYAAVGVARVREKR 175
Query 182 SSGSFELDQKFIPPILHIEASDTLTSNLKRTLNVIRAKIKTIQTNNRENEQKLIEFRSG- 240
+ + LD+ ++PP+L I A+ L S K L ++ + + + +++ +G
Sbjct 176 ADQALSLDEDYLPPVLDIAAAPPLASFAKELLGLLHQRGEAL-------AGRVVASSAGG 228
Query 241 --DIVSFWLVNALNTAHATLNHLLQHPQIHPERLFFELLRLTGSLLTFSTAY-EVDHLPQ 297
+I F L+ +N A A HL + +HP+ L+ EL+ L G TF+ + + P
Sbjct 229 ASEIADFLLLQLVNRAEALTGHLSRVRPLHPQELYRELVALAGEFCTFTASQRRPEEYPV 288
Query 298 YRHHQLQDSFQQLDVILRDLLDTIISSRYISIALKEIRPSYWIGSLESDKITRDSRLYIA 357
Y H L SF + + LR L T+I ++ I+I + E + L SD+ D+ ++
Sbjct 289 YNHDDLAASFAPVMLALRQALATVIDAKAIAIPIVEKAYGVHVAML-SDRSLIDNASFVL 347
Query 358 VSSSMMQTHELVQIVPLRFKVGSTVDVEQRVVAALPAIPLHHLMQVPTAIPVRSGVSYFE 417
V + + L P + KVGS + V LP I L + P IP +G +YFE
Sbjct 348 VVRADVPGESLRGHFPQQAKVGSVEHIRDLVNLQLPGIGLLPMPVAPRQIPYHAGSTYFE 407
Query 418 IEPHHELYQRMLESESICIYIPSGFQDISIELIAV 452
++ ++++ S +I F +++ A+
Sbjct 408 LDRGSAHWKQLTHSGGFAFHIAGQFPGLNLAFWAI 442
>B9L5S9 L-seryl-tRNA(Sec) selenium transferase [Nautilia profundicola
(strain ATCC BAA-1463 / DSM 18972 / AmH)]
Length=448
Score = 37.7 bits (86), Expect = 9e-07
Identities = 33/87 (38%), Positives = 44/87 (51%), Gaps = 12/87 (14%)
Query 193 IPPILHIEASDT------LTSNLKRTLNVIRAKIKT--IQTNNRENEQKLIEFRSGDIVS 244
IP + IE + T LT +++TLN IR IK I N E+ K IE RS +I+S
Sbjct 7 IPKVDKIEKALTHIPKKVLTPIIQKTLNEIREGIKNGKITQINEEDIVKTIEKRSEEILS 66
Query 245 FWLVNALN----TAHATLNHLLQHPQI 267
+VN +N T H L L P+I
Sbjct 67 PSIVNVINATGITVHTNLGRSLIDPEI 93
Score = 16.5 bits (31), Expect = 3.7
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query 121 HRSGRYHSHLTETHD-LYTNAQAADITLL 148
H S + SHL + L N AA + L+
Sbjct 121 HHSAKILSHLFGSESALIVNNNAAAVFLI 149
Lambda K H a alpha
0.324 0.139 0.406 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 342742
Database: d9a3cc8d2f2df441ade4fa73def0cd84.SwissProt.fasta
Posted date: Jun 2, 2024 10:41 AM
Number of letters in database: 892
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
