BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 0faf458102bf56055877a183bc39de1b.TrEMBL.fasta
13 sequences; 13,743 total letters
Query= ACIAD2709
Length=66
Score E
Sequences producing significant alignments: (Bits) Value
A0A7G2SFX6 Uncharacterized protein [Acinetobacter sp] 140 7e-49
Q6F905 Uncharacterized protein [Acinetobacter baylyi (strain ATCC... 140 7e-49
A0A829HCN7 Uncharacterized protein [Acinetobacter gyllenbergii CI... 113 4e-38
A0A143IZ07 Putative deoxyribonuclease RhsC [Acinetobacter pittii] 119 2e-36
A0A829HH52 RHS repeat protein [Acinetobacter gyllenbergii CIP 110... 115 4e-35
A0A240EA78 RHS repeat-associated core domain-containing protein [... 108 1e-32
N9GQC3 RHS repeat-associated core domain-containing protein [Acin... 87.4 4e-25
A0A0Q7FR59 RHS repeat-associated core domain-containing protein [... 87.4 4e-25
A0A8E1Z4Q1 RHS repeat protein [Acinetobacter haemolyticus] 87.4 4e-25
A0A833U1N0 Putative deoxyribonuclease RhsC [Acinetobacter berezin... 86.3 1e-24
A0A7H2WIG5 RHS repeat protein [Acinetobacter seifertii] 85.5 2e-24
A0A836MJB8 RHS repeat protein [Acinetobacter nosocomialis] 85.5 2e-24
A0A334NVA3 RHS repeat protein [Acinetobacter nosocomialis] 85.5 2e-24
>A0A7G2SFX6 Uncharacterized protein [Acinetobacter sp]
Length=65
Score = 140 bits (352), Expect = 7e-49
Identities = 64/65 (98%), Positives = 65/65 (100%), Gaps = 0/65 (0%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
+IGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW
Sbjct 1 MIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
Query 61 AWDEQ 65
AWDEQ
Sbjct 61 AWDEQ 65
>Q6F905 Uncharacterized protein [Acinetobacter baylyi (strain
ATCC 33305 / BD413 / ADP1)]
Length=65
Score = 140 bits (352), Expect = 7e-49
Identities = 64/65 (98%), Positives = 65/65 (100%), Gaps = 0/65 (0%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
+IGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW
Sbjct 1 MIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
Query 61 AWDEQ 65
AWDEQ
Sbjct 61 AWDEQ 65
>A0A829HCN7 Uncharacterized protein [Acinetobacter gyllenbergii
CIP 110306 = MTCC 11365]
Length=72
Score = 113 bits (282), Expect = 4e-38
Identities = 49/63 (78%), Positives = 58/63 (92%), Gaps = 0/63 (0%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
+IGEY+ADGVPLV+Y+ +GDKPVAA YG+G T+KTYWI TDAQNTPRRLI+AAD +TTVW
Sbjct 1 MIGEYSADGVPLVEYVWMGDKPVAAIYGSGATSKTYWIVTDAQNTPRRLIDAADASTTVW 60
Query 61 AWD 63
AWD
Sbjct 61 AWD 63
>A0A143IZ07 Putative deoxyribonuclease RhsC [Acinetobacter pittii]
Length=690
Score = 119 bits (298), Expect = 2e-36
Identities = 53/63 (84%), Positives = 58/63 (92%), Gaps = 0/63 (0%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
LIGEYNADG+PLV+YI +GDKPVAA YG+G T KTYWI TDAQNTPRRLI+AADGTTTVW
Sbjct 359 LIGEYNADGIPLVEYIWMGDKPVAAIYGSGVTTKTYWIVTDAQNTPRRLIDAADGTTTVW 418
Query 61 AWD 63
AWD
Sbjct 419 AWD 421
Score = 18.5 bits (36), Expect = 0.97
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 0/37 (0%)
Query 26 TYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVWAW 62
TY A + I D + R + G T W W
Sbjct 124 TYDATNKNQLKNINLDKTSLVRDITYDGSGQMTGWKW 160
Score = 16.5 bits (31), Expect = 4.7
Identities = 11/40 (28%), Positives = 16/40 (40%), Gaps = 0/40 (0%)
Query 6 NADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNT 45
N D LV+ I + G +Y T DA+N+
Sbjct 137 NLDKTSLVRDITYDGSGQMTGWKWGAGEASYGQTYDAKNS 176
Score = 16.2 bits (30), Expect = 6.5
Identities = 11/42 (26%), Positives = 20/42 (48%), Gaps = 2/42 (5%)
Query 19 GDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
G++ T TT+ Y++ + +N AA+G +VW
Sbjct 305 GNRREDKTTSGTTTSPQYYMAYNHKNERTLRGYAANG--SVW 344
Score = 16.2 bits (30), Expect = 6.5
Identities = 4/7 (57%), Positives = 5/7 (71%), Gaps = 0/7 (0%)
Query 34 KTYWITT 40
+TYW T
Sbjct 679 RTYWFVT 685
Score = 15.8 bits (29), Expect = 8.9
Identities = 13/44 (30%), Positives = 17/44 (39%), Gaps = 2/44 (5%)
Query 3 GEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTP 46
G Y A GV + KP + T KT+ + NTP
Sbjct 619 GNYLATGVVTFRPDTYSWKPDYGRFIEDTGIKTFGLILG--NTP 660
>A0A829HH52 RHS repeat protein [Acinetobacter gyllenbergii CIP
110306 = MTCC 11365]
Length=1252
Score = 115 bits (289), Expect = 4e-35
Identities = 51/63 (81%), Positives = 59/63 (94%), Gaps = 0/63 (0%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
LIGEY+ADGVPLV+Y+ +GDKPVAA YG+GTT+KTYWI TDAQNTPRRLI+AAD +TTVW
Sbjct 1171 LIGEYSADGVPLVEYVWMGDKPVAAIYGSGTTSKTYWIVTDAQNTPRRLIDAADASTTVW 1230
Query 61 AWD 63
AWD
Sbjct 1231 AWD 1233
Score = 22.3 bits (46), Expect = 0.040
Identities = 20/61 (33%), Positives = 25/61 (41%), Gaps = 11/61 (18%)
Query 5 YNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAA--DGTTTVWAW 62
YNADG K G T TT+ TY +T +RL DG T +A+
Sbjct 600 YNADGTVASK--TTGTGTATTTITGKTTSYTY-------DTLKRLSTETNPDGEKTAYAY 650
Query 63 D 63
D
Sbjct 651 D 651
Score = 20.8 bits (42), Expect = 0.14
Identities = 10/36 (28%), Positives = 17/36 (47%), Gaps = 0/36 (0%)
Query 15 YICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLI 50
Y G+K + GTT T ++ +A P R++
Sbjct 554 YDAYGNKASESQVVNGTTRTTSYVGYNALGQPERIV 589
Score = 19.2 bits (38), Expect = 0.52
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query 23 VAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTT 58
V ++ AG+T+KT TD L++ DG T
Sbjct 513 VLSSSQAGSTSKT----TDYTYLSNGLVSTVDGPRT 544
Score = 19.2 bits (38), Expect = 0.52
Identities = 11/36 (31%), Positives = 16/36 (44%), Gaps = 1/36 (3%)
Query 29 AGTTAKTYWITTDAQ-NTPRRLINAADGTTTVWAWD 63
+GT A W+T N +A G T W++D
Sbjct 709 SGTDAAKNWVTNSYDLNGNLTQTASALGITEKWSYD 744
>A0A240EA78 RHS repeat-associated core domain-containing protein
[Acinetobacter puyangensis]
Length=839
Score = 108 bits (271), Expect = 1e-32
Identities = 48/63 (76%), Positives = 56/63 (89%), Gaps = 0/63 (0%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
LIGEYNA G P+V+YI LGD+P+AA YG+GTTAKTYWI TDAQNTPRRLI++ DG TTVW
Sbjct 509 LIGEYNASGTPIVEYIWLGDQPIAAIYGSGTTAKTYWIVTDAQNTPRRLIDSTDGNTTVW 568
Query 61 AWD 63
A+D
Sbjct 569 AFD 571
Score = 18.1 bits (35), Expect = 1.3
Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 0/17 (0%)
Query 48 RLINAADGTTTVWAWDE 64
R++ GT W W +
Sbjct 42 RILRKQSGTDNDWYWTD 58
>N9GQC3 RHS repeat-associated core domain-containing protein [Acinetobacter
haemolyticus CIP 64.3 = MTCC 9819]
Length=1477
Score = 87.4 bits (215), Expect = 4e-25
Identities = 39/63 (62%), Positives = 50/63 (79%), Gaps = 1/63 (2%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
L+GEY A G+PLV+YI LGDKPVAA YG+G K Y+I TD QNTPRRLI++++ + VW
Sbjct 1118 LLGEYTAAGIPLVEYIWLGDKPVAAVYGSGAATKIYYIVTDVQNTPRRLIDSSN-SNVVW 1176
Query 61 AWD 63
+WD
Sbjct 1177 SWD 1179
Score = 16.9 bits (32), Expect = 3.5
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 7/60 (12%)
Query 4 EYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVWAWD 63
+YN DG + + LG T T KT DA +N DG T + +D
Sbjct 550 DYNLDG--SLSRVVLGSGSTTGT----ITGKTVSYDYDALGQLTSTVN-EDGEKTSFYYD 602
Score = 16.5 bits (31), Expect = 4.8
Identities = 6/14 (43%), Positives = 9/14 (64%), Gaps = 0/14 (0%)
Query 50 INAADGTTTVWAWD 63
I +G TT +A+D
Sbjct 383 ITDQNGNTTAYAFD 396
Score = 16.5 bits (31), Expect = 4.8
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 0/25 (0%)
Query 31 TTAKTYWITTDAQNTPRRLINAADG 55
T TY +D + L+++ DG
Sbjct 468 TKVTTYTYFSDITQSNNGLLSSEDG 492
>A0A0Q7FR59 RHS repeat-associated core domain-containing protein
[Acinetobacter sp. Root1280]
Length=1524
Score = 87.4 bits (215), Expect = 4e-25
Identities = 38/63 (60%), Positives = 49/63 (78%), Gaps = 0/63 (0%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
L+GEY+ADG P+V+YI L DKPVAA YG + K YWI TD QN PRRLI++++ ++ VW
Sbjct 1177 LLGEYDADGNPIVEYIWLFDKPVAAIYGTTSNTKIYWIATDVQNKPRRLIDSSNDSSIVW 1236
Query 61 AWD 63
AWD
Sbjct 1237 AWD 1239
>A0A8E1Z4Q1 RHS repeat protein [Acinetobacter haemolyticus]
Length=1563
Score = 87.4 bits (215), Expect = 4e-25
Identities = 39/63 (62%), Positives = 50/63 (79%), Gaps = 1/63 (2%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
L+GEY A G+PLV+YI LGDKPVAA YG+G K Y+I TD QNTPRRLI++++ + VW
Sbjct 1204 LLGEYTAAGIPLVEYIWLGDKPVAAVYGSGAATKIYYIVTDVQNTPRRLIDSSN-SNVVW 1262
Query 61 AWD 63
+WD
Sbjct 1263 SWD 1265
Score = 16.9 bits (32), Expect = 3.5
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 7/60 (12%)
Query 4 EYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVWAWD 63
+YN DG + + LG T T KT DA +N DG T + +D
Sbjct 636 DYNLDG--SLSRVVLGSGSTTGT----ITGKTVSYDYDALGQLTSTVN-EDGEKTSFYYD 688
Score = 16.5 bits (31), Expect = 4.8
Identities = 6/14 (43%), Positives = 9/14 (64%), Gaps = 0/14 (0%)
Query 50 INAADGTTTVWAWD 63
I +G TT +A+D
Sbjct 469 ITDQNGNTTAYAFD 482
Score = 16.5 bits (31), Expect = 4.8
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 0/25 (0%)
Query 31 TTAKTYWITTDAQNTPRRLINAADG 55
T TY +D + L+++ DG
Sbjct 554 TKVTTYTYFSDITQSNNGLLSSEDG 578
>A0A833U1N0 Putative deoxyribonuclease RhsC [Acinetobacter bereziniae]
Length=1513
Score = 86.3 bits (212), Expect = 1e-24
Identities = 38/63 (60%), Positives = 49/63 (78%), Gaps = 2/63 (3%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
LIGEYN++GVP+V+YI +KP+AA YG T YWI TD NTPRRLIN++DG++ VW
Sbjct 1174 LIGEYNSNGVPIVEYIWYRNKPIAAIYGESATI--YWIVTDLNNTPRRLINSSDGSSIVW 1231
Query 61 AWD 63
+WD
Sbjct 1232 SWD 1234
Score = 18.9 bits (37), Expect = 0.71
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 0/23 (0%)
Query 5 YNADGVPLVKYICLGDKPVAATY 27
YN DG K G+K TY
Sbjct 610 YNNDGTIASKTTVSGEKSDVTTY 632
>A0A7H2WIG5 RHS repeat protein [Acinetobacter seifertii]
Length=1561
Score = 85.5 bits (210), Expect = 2e-24
Identities = 40/63 (63%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
LIGEY A G+PLV+YI LGDKPVAA Y +G T K Y+I TD QNTPRRLI++ + VW
Sbjct 1206 LIGEYTATGIPLVEYIWLGDKPVAAVYESGATTKIYYIVTDVQNTPRRLIDS--NGSVVW 1263
Query 61 AWD 63
+WD
Sbjct 1264 SWD 1266
Score = 19.6 bits (39), Expect = 0.38
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query 20 DKPVAATYGAGTT-AKTYWITTDAQNTPRRLINAADGTTTVWAW 62
++P++ G+G T KTY DA + P +++A T + +
Sbjct 786 NRPISHIDGSGNTDTKTY----DALDNPITVLDALSSGTNPYLY 825
Score = 16.2 bits (30), Expect = 6.6
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (3%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGT-TAKTYW 37
L+G N DG Y + + Y G+ + K Y+
Sbjct 674 LVGSLNEDGEKTSYYYDNLGRIIKTIYSDGSISTKNYF 711
>A0A836MJB8 RHS repeat protein [Acinetobacter nosocomialis]
Length=1561
Score = 85.5 bits (210), Expect = 2e-24
Identities = 40/63 (63%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
LIGEY A G+PLV+YI LGDKPVAA Y +G T K Y+I TD QNTPRRLI++ + VW
Sbjct 1206 LIGEYTATGIPLVEYIWLGDKPVAAVYESGATTKIYYIVTDVQNTPRRLIDS--NGSVVW 1263
Query 61 AWD 63
+WD
Sbjct 1264 SWD 1266
Score = 19.6 bits (39), Expect = 0.38
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query 20 DKPVAATYGAGTT-AKTYWITTDAQNTPRRLINAADGTTTVWAW 62
++P++ G+G T KTY DA + P +++A T + +
Sbjct 786 NRPISHIDGSGNTDTKTY----DALDNPITVLDALSSGTNPYLY 825
Score = 15.8 bits (29), Expect = 9.1
Identities = 5/9 (56%), Positives = 6/9 (67%), Gaps = 0/9 (0%)
Query 1 LIGEYNADG 9
L+G N DG
Sbjct 674 LVGSLNEDG 682
>A0A334NVA3 RHS repeat protein [Acinetobacter nosocomialis]
Length=1561
Score = 85.5 bits (210), Expect = 2e-24
Identities = 40/63 (63%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGTTAKTYWITTDAQNTPRRLINAADGTTTVW 60
LIGEY A G+PLV+YI LGDKPVAA Y +G T K Y+I TD QNTPRRLI++ + VW
Sbjct 1206 LIGEYTATGIPLVEYIWLGDKPVAAVYESGATTKIYYIVTDVQNTPRRLIDS--NGSVVW 1263
Query 61 AWD 63
+WD
Sbjct 1264 SWD 1266
Score = 19.6 bits (39), Expect = 0.38
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query 20 DKPVAATYGAGTT-AKTYWITTDAQNTPRRLINAADGTTTVWAW 62
++P++ G+G T KTY DA + P +++A T + +
Sbjct 786 NRPISHIDGSGNTDTKTY----DALDNPITVLDALSSGTNPYLY 825
Score = 16.2 bits (30), Expect = 6.6
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (3%)
Query 1 LIGEYNADGVPLVKYICLGDKPVAATYGAGT-TAKTYW 37
L+G N DG Y + + Y G+ + K Y+
Sbjct 674 LVGSLNEDGEKTSYYYDNLGRIIKTIYSDGSISTKNYF 711
Lambda K H a alpha
0.323 0.137 0.459 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 370972
Database: 0faf458102bf56055877a183bc39de1b.TrEMBL.fasta
Posted date: May 10, 2024 2:16 AM
Number of letters in database: 13,743
Number of sequences in database: 13
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
