BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: dcf200dc5a2c94c1facca1526f030e64.TrEMBL.fasta
8 sequences; 6,639 total letters
Query= ACIAD2710
Length=47
Score E
Sequences producing significant alignments: (Bits) Value
Q6F904 Uncharacterized protein [Acinetobacter baylyi (strain ATCC... 96.7 2e-32
A0A829HDF9 RHS repeat-associated core domain-containing protein [... 53.9 4e-14
A0A829HCU3 RHS repeat-associated core domain-containing protein [... 53.9 4e-14
A0A240EA78 RHS repeat-associated core domain-containing protein [... 53.1 9e-14
A0A143IZ07 Putative deoxyribonuclease RhsC [Acinetobacter pittii] 51.2 5e-13
A0A0Q7FR59 RHS repeat-associated core domain-containing protein [... 47.8 8e-12
A0A833U1N0 Putative deoxyribonuclease RhsC [Acinetobacter berezin... 47.0 1e-11
A0A7Y8Q6X1 Bacterial toxin 8 domain-containing protein [Acinetoba... 45.1 7e-11
>Q6F904 Uncharacterized protein [Acinetobacter baylyi (strain
ATCC 33305 / BD413 / ADP1)]
Length=46
Score = 96.7 bits (239), Expect = 2e-32
Identities = 46/46 (100%), Positives = 46/46 (100%), Gaps = 0/46 (0%)
Query 1 MMNKTIIALSLRKAFRVGTPSVETVKFNFRFPGQYYDEVTNEPYTA 46
MMNKTIIALSLRKAFRVGTPSVETVKFNFRFPGQYYDEVTNEPYTA
Sbjct 1 MMNKTIIALSLRKAFRVGTPSVETVKFNFRFPGQYYDEVTNEPYTA 46
>A0A829HDF9 RHS repeat-associated core domain-containing protein
[Acinetobacter gyllenbergii CIP 110306 = MTCC 11365]
Length=259
Score = 53.9 bits (128), Expect = 4e-14
Identities = 23/31 (74%), Positives = 26/31 (84%), Gaps = 0/31 (0%)
Query 14 AFRVGTPSVETVKFNFRFPGQYYDEVTNEPY 44
AF VG PSV+TVKFN RFPGQYYDE+T + Y
Sbjct 26 AFGVGVPSVQTVKFNLRFPGQYYDELTKQHY 56
>A0A829HCU3 RHS repeat-associated core domain-containing protein
[Acinetobacter gyllenbergii CIP 110306 = MTCC 11365]
Length=266
Score = 53.9 bits (128), Expect = 4e-14
Identities = 23/31 (74%), Positives = 26/31 (84%), Gaps = 0/31 (0%)
Query 14 AFRVGTPSVETVKFNFRFPGQYYDEVTNEPY 44
AF VG PSV+TVKFN RFPGQYYDE+T + Y
Sbjct 16 AFGVGVPSVQTVKFNLRFPGQYYDELTKQHY 46
Score = 14.6 bits (26), Expect = 6.3
Identities = 8/29 (28%), Positives = 12/29 (41%), Gaps = 0/29 (0%)
Query 15 FRVGTPSVETVKFNFRFPGQYYDEVTNEP 43
F++ SV+ + N Q Y N P
Sbjct 146 FKLADLSVDIARVNKNTLSQLYVLEKNMP 174
>A0A240EA78 RHS repeat-associated core domain-containing protein
[Acinetobacter puyangensis]
Length=839
Score = 53.1 bits (126), Expect = 9e-14
Identities = 22/31 (71%), Positives = 26/31 (84%), Gaps = 0/31 (0%)
Query 14 AFRVGTPSVETVKFNFRFPGQYYDEVTNEPY 44
AF +G PSV+TVKFN RFPGQYYDE+T + Y
Sbjct 574 AFGIGIPSVQTVKFNLRFPGQYYDELTKQHY 604
>A0A143IZ07 Putative deoxyribonuclease RhsC [Acinetobacter pittii]
Length=690
Score = 51.2 bits (121), Expect = 5e-13
Identities = 21/31 (68%), Positives = 25/31 (81%), Gaps = 0/31 (0%)
Query 14 AFRVGTPSVETVKFNFRFPGQYYDEVTNEPY 44
AF VG P ++TVKFN RFPGQYYDE+T + Y
Sbjct 424 AFGVGIPHIQTVKFNLRFPGQYYDELTKQHY 454
>A0A0Q7FR59 RHS repeat-associated core domain-containing protein
[Acinetobacter sp. Root1280]
Length=1524
Score = 47.8 bits (112), Expect = 8e-12
Identities = 20/31 (65%), Positives = 25/31 (81%), Gaps = 0/31 (0%)
Query 14 AFRVGTPSVETVKFNFRFPGQYYDEVTNEPY 44
AF +G PS+ETVK N R+ GQ+YDE+TNE Y
Sbjct 1242 AFGLGKPSIETVKLNLRYSGQFYDELTNEFY 1272
Score = 14.2 bits (25), Expect = 9.1
Identities = 4/7 (57%), Positives = 4/7 (57%), Gaps = 0/7 (0%)
Query 31 FPGQYYD 37
FP Y D
Sbjct 100 FPNSYVD 106
>A0A833U1N0 Putative deoxyribonuclease RhsC [Acinetobacter bereziniae]
Length=1513
Score = 47.0 bits (110), Expect = 1e-11
Identities = 19/31 (61%), Positives = 24/31 (77%), Gaps = 0/31 (0%)
Query 14 AFRVGTPSVETVKFNFRFPGQYYDEVTNEPY 44
AF VG P +ET+KF+ RFPGQ YDE+T + Y
Sbjct 1237 AFGVGAPEIETIKFHLRFPGQVYDELTKQFY 1267
Score = 15.0 bits (27), Expect = 4.6
Identities = 5/10 (50%), Positives = 6/10 (60%), Gaps = 0/10 (0%)
Query 33 GQYYDEVTNE 42
G Y D+ NE
Sbjct 1443 GSYNDQRANE 1452
Score = 14.2 bits (25), Expect = 9.1
Identities = 13/41 (32%), Positives = 17/41 (41%), Gaps = 2/41 (5%)
Query 3 NKTIIALSLRKAFRVGTPSVETVKFNFRFPGQ--YYDEVTN 41
N +I+LS A + TV N Q +YD TN
Sbjct 212 NGKVISLSYTYASGYNRWLLTTVSDNLGNTLQLNHYDGTTN 252
>A0A7Y8Q6X1 Bacterial toxin 8 domain-containing protein [Acinetobacter
sp. SwsAc6]
Length=1502
Score = 45.1 bits (105), Expect = 7e-11
Identities = 22/42 (52%), Positives = 25/42 (60%), Gaps = 0/42 (0%)
Query 3 NKTIIALSLRKAFRVGTPSVETVKFNFRFPGQYYDEVTNEPY 44
N T++ R AF V PSVET K N RFPGQYY+ T Y
Sbjct 1256 NNTVVWEWFRDAFGVSKPSVETNKINLRFPGQYYESNTGLHY 1297
Score = 14.2 bits (25), Expect = 9.1
Identities = 4/18 (22%), Positives = 9/18 (50%), Gaps = 0/18 (0%)
Query 17 VGTPSVETVKFNFRFPGQ 34
+G + ++F PG+
Sbjct 106 MGGSNTNRIRFIVMLPGE 123
Lambda K H a alpha
0.334 0.144 0.435 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 168246
Database: dcf200dc5a2c94c1facca1526f030e64.TrEMBL.fasta
Posted date: May 10, 2024 5:25 AM
Number of letters in database: 6,639
Number of sequences in database: 8
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
