BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 01a535cdc178e13f73ff9036d8a6725c.TrEMBL.fasta
12 sequences; 14,681 total letters
Query= ACIAD2713
Length=104
Score E
Sequences producing significant alignments: (Bits) Value
A0A7G2SF83 RHS repeat-associated core domain-containing protein [... 209 3e-75
Q6F901 Rhs family protein [Acinetobacter baylyi (strain ATCC 3330... 209 3e-75
A0A2U3N2S5 Putative deoxyribonuclease RhsA [Acinetobacter stercoris] 150 1e-46
A0A7H2WIG5 RHS repeat protein [Acinetobacter seifertii] 126 3e-38
A0A836MJB8 RHS repeat protein [Acinetobacter nosocomialis] 125 6e-38
A0A334NVA3 RHS repeat protein [Acinetobacter nosocomialis] 125 6e-38
N9GQC3 RHS repeat-associated core domain-containing protein [Acin... 122 1e-36
A0A8E1Z4Q1 RHS repeat protein [Acinetobacter haemolyticus] 122 1e-36
A0A833U1N0 Putative deoxyribonuclease RhsC [Acinetobacter berezin... 110 2e-32
A0A372BLI2 RHS repeat protein [Acinetobacter sp. JW] 72.4 4e-19
G4WHZ6 RhsD [Klebsiella pneumoniae] 41.6 2e-08
D6MM31 Rhs1core [Pseudomonas savastanoi pv. savastanoi] 39.3 1e-07
>A0A7G2SF83 RHS repeat-associated core domain-containing protein
[Acinetobacter sp]
Length=103
Score = 209 bits (533), Expect = 3e-75
Identities = 102/103 (99%), Positives = 103/103 (100%), Gaps = 0/103 (0%)
Query 1 VEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID 60
+EPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID
Sbjct 1 MEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID 60
Query 61 ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF 103
ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF
Sbjct 61 ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF 103
>Q6F901 Rhs family protein [Acinetobacter baylyi (strain ATCC
33305 / BD413 / ADP1)]
Length=103
Score = 209 bits (533), Expect = 3e-75
Identities = 102/103 (99%), Positives = 103/103 (100%), Gaps = 0/103 (0%)
Query 1 VEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID 60
+EPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID
Sbjct 1 MEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID 60
Query 61 ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF 103
ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF
Sbjct 61 ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF 103
>A0A2U3N2S5 Putative deoxyribonuclease RhsA [Acinetobacter stercoris]
Length=1494
Score = 150 bits (380), Expect = 1e-46
Identities = 70/103 (68%), Positives = 83/103 (81%), Gaps = 0/103 (0%)
Query 1 VEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID 60
+EPDPI L+GGLNPY YA +NP+ YVD TG +PVIIAMGVGA ++ YV KVGI AFI+
Sbjct 1264 MEPDPIGLEGGLNPYAYAYNNPITYVDLTGEHPVIIAMGVGAGMSSAFYVGKVGINAFIE 1323
Query 61 ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF 103
A+KNNQ L+ GTWDN NSFS TE+GQ+ +GAAFG IGKAAF
Sbjct 1324 AKKNNQDLVGGTWDNLRNSFSWTEMGQQAALGAAFGGIGKAAF 1366
>A0A7H2WIG5 RHS repeat protein [Acinetobacter seifertii]
Length=1561
Score = 126 bits (317), Expect = 3e-38
Identities = 63/103 (61%), Positives = 76/103 (74%), Gaps = 4/103 (4%)
Query 1 VEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID 60
+EPDPI L GGLNPY YAL+NPVMYVD TG NP++IAMGV A+ G Y +V A D
Sbjct 1312 MEPDPIGLAGGLNPYTYALNNPVMYVDMTGENPILIAMGVSAATAGAFYTGEVFFNAVYD 1371
Query 61 ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF 103
A KN QS++ D+F+ SFS ELGQ+MV+GAAFG +GKAAF
Sbjct 1372 AYKNKQSIL----DSFSRSFSIKELGQQMVIGAAFGGVGKAAF 1410
Score = 24.3 bits (51), Expect = 0.026
Identities = 11/24 (46%), Positives = 16/24 (67%), Gaps = 2/24 (8%)
Query 18 ALDNPVMYVD--TTGTNPVIIAMG 39
ALDNP+ +D ++GTNP + G
Sbjct 805 ALDNPITVLDALSSGTNPYLYRNG 828
Score = 21.6 bits (44), Expect = 0.22
Identities = 17/58 (29%), Positives = 26/58 (45%), Gaps = 12/58 (21%)
Query 45 NGGLYVTKVGIRAFIDARKNNQSLMSGTWDNFNN------SFSGTELGQEMVVGAAFG 96
N GL +K G R +S T+DN+ N + +GTE ++ V +FG
Sbjct 571 NNGLLSSKDG------PRSGTLDKISYTYDNYGNLASVSTTINGTERTEQYVGYNSFG 622
Score = 21.2 bits (43), Expect = 0.30
Identities = 9/24 (38%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 12 LNPYNYALDNPVMYVDTTGTNPVI 35
L+ Y ALDN V +T P++
Sbjct 322 LSHYETALDNNVSNPETAAQRPIL 345
Score = 18.9 bits (37), Expect = 1.8
Identities = 7/29 (24%), Positives = 15/29 (52%), Gaps = 0/29 (0%)
Query 51 TKVGIRAFIDARKNNQSLMSGTWDNFNNS 79
T I ++ NN+ +SG+ ++N+
Sbjct 1166 TSTTINRYMSYNANNERTLSGSTSAWSNT 1194
Score = 18.1 bits (35), Expect = 3.3
Identities = 7/15 (47%), Positives = 8/15 (53%), Gaps = 0/15 (0%)
Query 7 SLQGGLNPYNYALDN 21
+L G NPY Y N
Sbjct 815 ALSSGTNPYLYRNGN 829
Score = 16.9 bits (32), Expect = 8.0
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 17 YALDNPVMYVDTTGTNPVIIAMGV 40
+ +D P + V T+G I A+ V
Sbjct 359 WKVDYPSVVVTTSGIYKTITAVKV 382
>A0A836MJB8 RHS repeat protein [Acinetobacter nosocomialis]
Length=1561
Score = 125 bits (315), Expect = 6e-38
Identities = 63/103 (61%), Positives = 77/103 (75%), Gaps = 4/103 (4%)
Query 1 VEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID 60
+EPDPI L GGLNPY YAL+NPVMYVD TG NP++IAMGV A+ G Y +V A D
Sbjct 1312 MEPDPIGLAGGLNPYIYALNNPVMYVDMTGENPILIAMGVSAATAGAFYTGEVFFNAVYD 1371
Query 61 ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF 103
A KN+QS++ D+F+ SFS ELGQ+MV+GAAFG +GKAAF
Sbjct 1372 AYKNDQSIL----DSFSKSFSIKELGQQMVIGAAFGGVGKAAF 1410
Score = 24.3 bits (51), Expect = 0.026
Identities = 11/24 (46%), Positives = 16/24 (67%), Gaps = 2/24 (8%)
Query 18 ALDNPVMYVD--TTGTNPVIIAMG 39
ALDNP+ +D ++GTNP + G
Sbjct 805 ALDNPITVLDALSSGTNPYLYRNG 828
Score = 22.3 bits (46), Expect = 0.12
Identities = 17/58 (29%), Positives = 26/58 (45%), Gaps = 12/58 (21%)
Query 45 NGGLYVTKVGIRAFIDARKNNQSLMSGTWDNFNN------SFSGTELGQEMVVGAAFG 96
N GL +K G R +S T+DN+ N + +GTE ++ V +FG
Sbjct 571 NNGLLSSKDG------PRSGTLDKISYTYDNYGNLASVSTTINGTERNEQYVGYNSFG 622
Score = 21.2 bits (43), Expect = 0.30
Identities = 9/24 (38%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 12 LNPYNYALDNPVMYVDTTGTNPVI 35
L+ Y ALDN V +T P++
Sbjct 322 LSHYETALDNNVSNPETAAQRPIL 345
Score = 18.9 bits (37), Expect = 1.8
Identities = 7/29 (24%), Positives = 15/29 (52%), Gaps = 0/29 (0%)
Query 51 TKVGIRAFIDARKNNQSLMSGTWDNFNNS 79
T I ++ NN+ +SG+ ++N+
Sbjct 1166 TSTTINRYMSYNANNERTLSGSTSAWSNT 1194
Score = 18.1 bits (35), Expect = 3.3
Identities = 7/15 (47%), Positives = 8/15 (53%), Gaps = 0/15 (0%)
Query 7 SLQGGLNPYNYALDN 21
+L G NPY Y N
Sbjct 815 ALSSGTNPYLYRNGN 829
Score = 17.3 bits (33), Expect = 6.0
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 0/31 (0%)
Query 59 IDARKNNQSLMSGTWDNFNNSFSGTELGQEM 89
I+ +NQ + DN NN S G ++
Sbjct 237 INLSYDNQLNLEQVTDNKNNKLSLVRNGSQV 267
Score = 16.9 bits (32), Expect = 8.0
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 17 YALDNPVMYVDTTGTNPVIIAMGV 40
+ +D P + V T+G I A+ V
Sbjct 359 WKVDYPSVVVTTSGIYKTITAVKV 382
>A0A334NVA3 RHS repeat protein [Acinetobacter nosocomialis]
Length=1561
Score = 125 bits (315), Expect = 6e-38
Identities = 63/103 (61%), Positives = 77/103 (75%), Gaps = 4/103 (4%)
Query 1 VEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID 60
+EPDPI L GGLNPY YAL+NPVMYVD TG NP++IAMGV A+ G Y +V A D
Sbjct 1312 MEPDPIGLAGGLNPYIYALNNPVMYVDMTGENPILIAMGVSAATAGAFYTGEVFFNAVYD 1371
Query 61 ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF 103
A KN+QS++ D+F+ SFS ELGQ+MV+GAAFG +GKAAF
Sbjct 1372 AYKNDQSIL----DSFSKSFSIKELGQQMVIGAAFGGVGKAAF 1410
Score = 24.3 bits (51), Expect = 0.026
Identities = 11/24 (46%), Positives = 16/24 (67%), Gaps = 2/24 (8%)
Query 18 ALDNPVMYVD--TTGTNPVIIAMG 39
ALDNP+ +D ++GTNP + G
Sbjct 805 ALDNPITVLDALSSGTNPYLYRNG 828
Score = 21.6 bits (44), Expect = 0.22
Identities = 17/58 (29%), Positives = 26/58 (45%), Gaps = 12/58 (21%)
Query 45 NGGLYVTKVGIRAFIDARKNNQSLMSGTWDNFNN------SFSGTELGQEMVVGAAFG 96
N GL +K G R +S T+DN+ N + +GTE ++ V +FG
Sbjct 571 NNGLLSSKDG------PRSGTLDKISYTYDNYGNLASVSTTINGTERTEQYVGYNSFG 622
Score = 21.2 bits (43), Expect = 0.30
Identities = 9/24 (38%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 12 LNPYNYALDNPVMYVDTTGTNPVI 35
L+ Y ALDN V +T P++
Sbjct 322 LSHYETALDNNVSNPETAAQRPIL 345
Score = 18.9 bits (37), Expect = 1.8
Identities = 7/29 (24%), Positives = 15/29 (52%), Gaps = 0/29 (0%)
Query 51 TKVGIRAFIDARKNNQSLMSGTWDNFNNS 79
T I ++ NN+ +SG+ ++N+
Sbjct 1166 TSTTINRYMSYNANNERTLSGSTSAWSNT 1194
Score = 18.1 bits (35), Expect = 3.3
Identities = 7/15 (47%), Positives = 8/15 (53%), Gaps = 0/15 (0%)
Query 7 SLQGGLNPYNYALDN 21
+L G NPY Y N
Sbjct 815 ALSSGTNPYLYRNGN 829
Score = 16.9 bits (32), Expect = 8.0
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 17 YALDNPVMYVDTTGTNPVIIAMGV 40
+ +D P + V T+G I A+ V
Sbjct 359 WKVDYPSVVVTTSGIYKTITAVKV 382
>N9GQC3 RHS repeat-associated core domain-containing protein [Acinetobacter
haemolyticus CIP 64.3 = MTCC 9819]
Length=1477
Score = 122 bits (306), Expect = 1e-36
Identities = 64/103 (62%), Positives = 75/103 (73%), Gaps = 1/103 (1%)
Query 1 VEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID 60
+EPDPI L GGLNPY YAL+NPVMYVD TG NP++IAMGVGA I G Y + I A D
Sbjct 1225 MEPDPIGLAGGLNPYAYALNNPVMYVDMTGENPILIAMGVGAVIGGIFYTGETFIGAVYD 1284
Query 61 ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF 103
A +N +G +NF+NSFS +LGQ+MVVGA FG IGKAAF
Sbjct 1285 AYSDNTG-AAGMVNNFSNSFSIKKLGQQMVVGAVFGGIGKAAF 1326
Score = 18.9 bits (37), Expect = 1.8
Identities = 10/24 (42%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query 18 ALDNPVMYVD--TTGTNPVIIAMG 39
ALDN +D ++GTNP + G
Sbjct 717 ALDNLTTSLDALSSGTNPYLYRNG 740
Score = 18.1 bits (35), Expect = 3.3
Identities = 7/15 (47%), Positives = 8/15 (53%), Gaps = 0/15 (0%)
Query 7 SLQGGLNPYNYALDN 21
+L G NPY Y N
Sbjct 727 ALSSGTNPYLYRNGN 741
Score = 18.1 bits (35), Expect = 3.3
Identities = 15/48 (31%), Positives = 21/48 (44%), Gaps = 5/48 (10%)
Query 30 GTNPVIIAMGVGASINGGLYVTKV--GIRAFIDARKNNQSLMSGTWDN 75
G PV G GA+ VT V R ID+ +N + +WD+
Sbjct 1136 GDKPVAAVYGSGAATKIYYIVTDVQNTPRRLIDSSNSN---VVWSWDS 1180
Score = 16.9 bits (32), Expect = 8.0
Identities = 6/12 (50%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 10 GGLNPYNYALDN 21
G L+ NY+ DN
Sbjct 496 GTLDKINYSYDN 507
>A0A8E1Z4Q1 RHS repeat protein [Acinetobacter haemolyticus]
Length=1563
Score = 122 bits (306), Expect = 1e-36
Identities = 64/103 (62%), Positives = 75/103 (73%), Gaps = 1/103 (1%)
Query 1 VEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID 60
+EPDPI L GGLNPY YAL+NPVMYVD TG NP++IAMGVGA I G Y + I A D
Sbjct 1311 MEPDPIGLAGGLNPYAYALNNPVMYVDMTGENPILIAMGVGAVIGGIFYTGETFIGAVYD 1370
Query 61 ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF 103
A +N +G +NF+NSFS +LGQ+MVVGA FG IGKAAF
Sbjct 1371 AYSDNTG-AAGMVNNFSNSFSIKKLGQQMVVGAVFGGIGKAAF 1412
Score = 18.9 bits (37), Expect = 1.8
Identities = 10/24 (42%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query 18 ALDNPVMYVD--TTGTNPVIIAMG 39
ALDN +D ++GTNP + G
Sbjct 803 ALDNLTTSLDALSSGTNPYLYRNG 826
Score = 18.1 bits (35), Expect = 3.3
Identities = 7/15 (47%), Positives = 8/15 (53%), Gaps = 0/15 (0%)
Query 7 SLQGGLNPYNYALDN 21
+L G NPY Y N
Sbjct 813 ALSSGTNPYLYRNGN 827
Score = 18.1 bits (35), Expect = 3.3
Identities = 15/48 (31%), Positives = 21/48 (44%), Gaps = 5/48 (10%)
Query 30 GTNPVIIAMGVGASINGGLYVTKV--GIRAFIDARKNNQSLMSGTWDN 75
G PV G GA+ VT V R ID+ +N + +WD+
Sbjct 1222 GDKPVAAVYGSGAATKIYYIVTDVQNTPRRLIDSSNSN---VVWSWDS 1266
Score = 16.9 bits (32), Expect = 8.0
Identities = 6/12 (50%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 10 GGLNPYNYALDN 21
G L+ NY+ DN
Sbjct 582 GTLDKINYSYDN 593
>A0A833U1N0 Putative deoxyribonuclease RhsC [Acinetobacter bereziniae]
Length=1513
Score = 110 bits (275), Expect = 2e-32
Identities = 52/103 (50%), Positives = 71/103 (69%), Gaps = 1/103 (1%)
Query 1 VEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVGIRAFID 60
+EPDP L+ NPY YA +NP+MYVD TG NPV+IAMGVGA ++ +Y+ K G+ +++D
Sbjct 1281 MEPDPAGLEFNPNPYAYANNNPIMYVDPTGKNPVLIAMGVGAGLSSAIYIGKTGLNSYLD 1340
Query 61 ARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAAF 103
A T + F ++FS TELGQ+ +GAAFG +GKAAF
Sbjct 1341 ATSKGLD-FKATVNIFRSNFSWTELGQQAAIGAAFGGVGKAAF 1382
Score = 16.9 bits (32), Expect = 8.0
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 0/26 (0%)
Query 67 SLMSGTWDNFNNSFSGTELGQEMVVG 92
S SG DNF + GT + V G
Sbjct 599 SYPSGIIDNFVYNNDGTIASKTTVSG 624
>A0A372BLI2 RHS repeat protein [Acinetobacter sp. JW]
Length=1561
Score = 72.4 bits (176), Expect = 4e-19
Identities = 45/103 (44%), Positives = 55/103 (53%), Gaps = 16/103 (16%)
Query 1 VEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPV-IIAMGVGASINGGLYVTKVGIRAFI 59
+EPDPI L GGLNPY YAL NP+MYVD TG NPV +I VG +I GG+ I +
Sbjct 1313 MEPDPIGLVGGLNPYTYALSNPIMYVDMTGENPVMLIGAIVGGAIGGGM-----NIAGQL 1367
Query 60 DARKNNQSLMSGTWDNFNNSFSGTELGQEMVVGAAFGRIGKAA 102
+ NQS NSF+ LG + GA G + A
Sbjct 1368 FSMSTNQS----------NSFNWKSLGVATLGGAITGALAPLA 1400
Score = 18.9 bits (37), Expect = 1.8
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 0/25 (0%)
Query 48 LYVTKVGIRAFIDARKNNQSLMSGT 72
L TKV +R+F+ N S + T
Sbjct 378 LSATKVILRSFLGEETGNTSFDTST 402
Score = 17.3 bits (33), Expect = 6.0
Identities = 12/57 (21%), Positives = 25/57 (44%), Gaps = 6/57 (11%)
Query 21 NPVMYVDTTGTNPVIIAMGVGASINGGLYVTKV--GIRAFIDARKNNQSLMSGTWDN 75
+P++ G P++ G G++ VT + R +D N ++ +WD+
Sbjct 1216 SPIVEYVWLGDKPIVAIYGSGSATKIYYIVTDIQNTPRRLVDTSGN----VAWSWDS 1268
>G4WHZ6 RhsD [Klebsiella pneumoniae]
Length=1262
Score = 41.6 bits (96), Expect = 2e-08
Identities = 17/30 (57%), Positives = 20/30 (67%), Gaps = 0/30 (0%)
Query 1 VEPDPISLQGGLNPYNYALDNPVMYVDTTG 30
+ DPI L GG+N Y YAL NP Y+D TG
Sbjct 1224 ITSDPIGLAGGINTYAYALGNPYSYIDPTG 1253
Score = 17.7 bits (34), Expect = 4.4
Identities = 10/35 (29%), Positives = 18/35 (51%), Gaps = 2/35 (6%)
Query 20 DNPVMYVDTTGTNPVIIAMGVGASINGGLYVTKVG 54
++P++Y T+P MG S++ G V + G
Sbjct 832 ESPILYGYDEATSP--YGMGRLTSVDDGNGVRRYG 864
Score = 17.3 bits (33), Expect = 6.0
Identities = 8/26 (31%), Positives = 13/26 (50%), Gaps = 0/26 (0%)
Query 56 RAFIDARKNNQSLMSGTWDNFNNSFS 81
R+++ N L+SG D N F+
Sbjct 341 RSYLYDDPNAPGLLSGLVDENGNRFA 366
>D6MM31 Rhs1core [Pseudomonas savastanoi pv. savastanoi]
Length=922
Score = 39.3 bits (90), Expect = 1e-07
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query 1 VEPDPISLQGGLNPYNYALDNPVMYVDTTGTNPVIIAMGVGASINGGLYV 50
V+ DPI L GGLN Y Y NP+ ++D G + + IA A G +V
Sbjct 757 VQSDPIGLGGGLNTYAYVEGNPIRFIDPKGQS-IWIAPAAEAGATAGSFV 805
Lambda K H a alpha
0.322 0.140 0.423 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 849180
Database: 01a535cdc178e13f73ff9036d8a6725c.TrEMBL.fasta
Posted date: May 20, 2024 10:50 PM
Number of letters in database: 14,681
Number of sequences in database: 12
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
