BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 01afc601ca9d7863f32494f44b3b3a8d.TrEMBL.fasta
24 sequences; 8,497 total letters
Query= ACIAD2728
Length=65
Score E
Sequences producing significant alignments: (Bits) Value
A9UAM4 UmuC [Acinetobacter radioresistens] 72.4 2e-22
A0A833PB46 Protein UmuC [Acinetobacter bereziniae] 67.0 1e-19
A0A829HI97 DNA polymerase V [Acinetobacter gyllenbergii CIP 11030... 67.0 2e-19
A0A1G6GKF5 DNA polymerase V [Acinetobacter kookii] 69.7 4e-19
A0A4R0F294 Y-family DNA polymerase [Acinetobacter sp. ANC 4216] 69.7 4e-19
A0A4Q6XCI6 DUF4113 domain-containing protein [Acinetobacter halot... 69.3 5e-19
N9FGD3 UmuC domain-containing protein [Acinetobacter beijerinckii... 69.3 5e-19
A0A072CW45 DNA polymerase [Acinetobacter sp. ETR1] 68.9 7e-19
N8XF70 UmuC domain-containing protein [Acinetobacter sp. CIP 56.2] 68.9 7e-19
A0A0M1I147 DNA-directed DNA polymerase [Acinetobacter sp. C15] 68.9 7e-19
N9BSX8 UmuC domain-containing protein [Acinetobacter soli NIPH 2899] 68.9 7e-19
A0A6H2VGJ2 DNA polymerase V subunit UmuC [Acinetobacter pittii] 68.9 7e-19
A5Y0S5 UmuC-like protein [Acinetobacter baumannii] 55.1 5e-14
Q7WT05 Putative UV repair DNA polymerase [Bacteroides coprosuis] 52.0 1e-13
G9IZR0 MucB [Enterobacter cloacae] 53.9 1e-13
O52211 MucB [IncL/M plasmid R471a] 53.1 3e-13
O52207 MucB [IncL/M plasmid R446b] 53.1 3e-13
Q44054 RumB(R391) [IncJ plasmid R391] 52.0 7e-13
A1YLB8 Truncated ImpB [Escherichia coli] 51.6 9e-13
Q9ZA91 ImpB [Shigella flexneri] 51.6 9e-13
Q52417 RulB [Pseudomonas syringae] 50.4 2e-12
A0A0H2V735 UmuC protein [Escherichia coli O6:H1 (strain CFT073 / ... 49.7 4e-12
Q9Z3S8 RulB [Pseudomonas syringae pv. tomato] 45.1 3e-11
Q9RR42 MucB [IncT plasmid R394] 47.4 3e-11
>A9UAM4 UmuC [Acinetobacter radioresistens]
Length=35
Score = 72.4 bits (176), Expect = 2e-22
Identities = 35/35 (100%), Positives = 35/35 (100%), Gaps = 0/35 (0%)
Query 15 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLS 49
MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLS
Sbjct 1 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLS 35
>A0A833PB46 Protein UmuC [Acinetobacter bereziniae]
Length=100
Score = 67.0 bits (162), Expect = 1e-19
Identities = 29/39 (74%), Positives = 35/39 (90%), Gaps = 0/39 (0%)
Query 15 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
MS++IFALIDINN YVSCER+F P LN +PV+VLS+NDG
Sbjct 1 MSEQIFALIDINNCYVSCERVFNPSLNNQPVVVLSNNDG 39
>A0A829HI97 DNA polymerase V [Acinetobacter gyllenbergii CIP 110306
= MTCC 11365]
Length=137
Score = 67.0 bits (162), Expect = 2e-19
Identities = 31/47 (66%), Positives = 36/47 (77%), Gaps = 0/47 (0%)
Query 15 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDGQRSPLDYE 61
+ QRIFALID+NN YVSCER+F PKL RPV+VLS+NDG YE
Sbjct 3 LPQRIFALIDVNNCYVSCERVFNPKLEQRPVVVLSNNDGCVVSRSYE 49
>A0A1G6GKF5 DNA polymerase V [Acinetobacter kookii]
Length=438
Score = 69.7 bits (169), Expect = 4e-19
Identities = 29/39 (74%), Positives = 37/39 (95%), Gaps = 0/39 (0%)
Query 15 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
M+Q++FALIDINN YVSCER+F P+LNG+PV+VLS+NDG
Sbjct 1 MNQKLFALIDINNCYVSCERVFNPRLNGQPVVVLSNNDG 39
>A0A4R0F294 Y-family DNA polymerase [Acinetobacter sp. ANC 4216]
Length=438
Score = 69.7 bits (169), Expect = 4e-19
Identities = 29/39 (74%), Positives = 37/39 (95%), Gaps = 0/39 (0%)
Query 15 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
M+Q++FALIDINN YVSCER+F P+LNG+PV+VLS+NDG
Sbjct 1 MNQKLFALIDINNCYVSCERVFNPRLNGQPVVVLSNNDG 39
>A0A4Q6XCI6 DUF4113 domain-containing protein [Acinetobacter halotolerans]
Length=429
Score = 69.3 bits (168), Expect = 5e-19
Identities = 30/39 (77%), Positives = 35/39 (90%), Gaps = 0/39 (0%)
Query 15 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
M +RIFAL+D+NN YVSCER+F PKLN RPVIVLS+NDG
Sbjct 1 MRERIFALVDVNNCYVSCERVFNPKLNDRPVIVLSNNDG 39
>N9FGD3 UmuC domain-containing protein [Acinetobacter beijerinckii
ANC 3835]
Length=432
Score = 69.3 bits (168), Expect = 5e-19
Identities = 32/47 (68%), Positives = 37/47 (79%), Gaps = 0/47 (0%)
Query 15 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDGQRSPLDYE 61
+ QRIFALID+NNAYVSCER+F PKL RPV+VLS+NDG YE
Sbjct 3 LPQRIFALIDVNNAYVSCERVFNPKLENRPVVVLSNNDGCVVSRSYE 49
>A0A072CW45 DNA polymerase [Acinetobacter sp. ETR1]
Length=428
Score = 68.9 bits (167), Expect = 7e-19
Identities = 31/39 (79%), Positives = 35/39 (90%), Gaps = 0/39 (0%)
Query 15 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
M +RI ALIDINN YVSCER+F+PKLN RPVIVLS+NDG
Sbjct 1 MKERIIALIDINNCYVSCERLFQPKLNNRPVIVLSNNDG 39
>N8XF70 UmuC domain-containing protein [Acinetobacter sp. CIP
56.2]
Length=429
Score = 68.9 bits (167), Expect = 7e-19
Identities = 29/39 (74%), Positives = 35/39 (90%), Gaps = 0/39 (0%)
Query 15 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
M +RIFAL+D+NN YVSCER+F PKLN +PVIVLS+NDG
Sbjct 1 MKERIFALVDVNNCYVSCERVFNPKLNNKPVIVLSNNDG 39
>A0A0M1I147 DNA-directed DNA polymerase [Acinetobacter sp. C15]
Length=430
Score = 68.9 bits (167), Expect = 7e-19
Identities = 29/39 (74%), Positives = 36/39 (92%), Gaps = 0/39 (0%)
Query 15 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
M QRIFAL+D+NN YVSCER+F+PKL+ RPV+VLS+NDG
Sbjct 1 MKQRIFALVDVNNCYVSCERVFDPKLHQRPVVVLSNNDG 39
>N9BSX8 UmuC domain-containing protein [Acinetobacter soli NIPH
2899]
Length=430
Score = 68.9 bits (167), Expect = 7e-19
Identities = 29/39 (74%), Positives = 36/39 (92%), Gaps = 0/39 (0%)
Query 15 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
M QRIFAL+D+NN YVSCER+F+PKL+ RPV+VLS+NDG
Sbjct 1 MKQRIFALVDVNNCYVSCERVFDPKLHQRPVVVLSNNDG 39
>A0A6H2VGJ2 DNA polymerase V subunit UmuC [Acinetobacter pittii]
Length=430
Score = 68.9 bits (167), Expect = 7e-19
Identities = 29/39 (74%), Positives = 36/39 (92%), Gaps = 0/39 (0%)
Query 15 MSQRIFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
M +RIFAL+D+NN YVSCER+F+P+LN RPVIVLS+NDG
Sbjct 1 MRERIFALVDVNNCYVSCERVFQPELNNRPVIVLSNNDG 39
Score = 15.4 bits (28), Expect = 7.3
Identities = 7/22 (32%), Positives = 11/22 (50%), Gaps = 0/22 (0%)
Query 4 SNLQSETYALVMSQRIFALIDI 25
+N TY M +RI+ I +
Sbjct 118 NNYDLTTYCHGMKERIWKWIGL 139
>A5Y0S5 UmuC-like protein [Acinetobacter baumannii]
Length=425
Score = 55.1 bits (131), Expect = 5e-14
Identities = 25/36 (69%), Positives = 30/36 (83%), Gaps = 0/36 (0%)
Query 18 RIFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
R ALID NN YVSCER+F+P L G+PVI+LS+NDG
Sbjct 3 RPIALIDGNNFYVSCERVFQPHLLGKPVIILSNNDG 38
>Q7WT05 Putative UV repair DNA polymerase [Bacteroides coprosuis]
Length=126
Score = 52.0 bits (123), Expect = 1e-13
Identities = 20/35 (57%), Positives = 28/35 (80%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
+ LID NN + SCER+F P L+G+P++VLS+NDG
Sbjct 1 MIGLIDCNNFFASCERVFNPNLDGKPIVVLSNNDG 35
>G9IZR0 MucB [Enterobacter cloacae]
Length=434
Score = 53.9 bits (128), Expect = 1e-13
Identities = 22/35 (63%), Positives = 28/35 (80%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
++ALID+N+ Y SCE F P L GRPV+VLS+NDG
Sbjct 14 VYALIDVNSMYCSCEEAFRPDLRGRPVVVLSNNDG 48
>O52211 MucB [IncL/M plasmid R471a]
Length=421
Score = 53.1 bits (126), Expect = 3e-13
Identities = 22/35 (63%), Positives = 28/35 (80%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
++ALID+N+ Y SCE F P L GRPV+VLS+NDG
Sbjct 1 MYALIDVNSMYCSCEEAFRPDLRGRPVVVLSNNDG 35
>O52207 MucB [IncL/M plasmid R446b]
Length=421
Score = 53.1 bits (126), Expect = 3e-13
Identities = 22/35 (63%), Positives = 28/35 (80%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
++ALID+N+ Y SCE F P L GRPV+VLS+NDG
Sbjct 1 MYALIDVNSMYCSCEEAFRPDLRGRPVVVLSNNDG 35
>Q44054 RumB(R391) [IncJ plasmid R391]
Length=422
Score = 52.0 bits (123), Expect = 7e-13
Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
+FAL+D NN Y SCE++F P L PV+VLS+NDG
Sbjct 3 VFALVDCNNFYASCEKLFRPDLKDTPVVVLSNNDG 37
>A1YLB8 Truncated ImpB [Escherichia coli]
Length=398
Score = 51.6 bits (122), Expect = 9e-13
Identities = 25/42 (60%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG---QRSP 57
+FAL DIN+ Y SCE++F P L PVIVLS+NDG RSP
Sbjct 1 MFALADINSFYASCEKVFRPDLRNEPVIVLSNNDGCVIARSP 42
>Q9ZA91 ImpB [Shigella flexneri]
Length=423
Score = 51.6 bits (122), Expect = 9e-13
Identities = 25/42 (60%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG---QRSP 57
+FAL DIN+ Y SCE++F P L PVIVLS+NDG RSP
Sbjct 1 MFALADINSFYASCEKVFRPDLRNEPVIVLSNNDGCVIARSP 42
>Q52417 RulB [Pseudomonas syringae]
Length=432
Score = 50.4 bits (119), Expect = 2e-12
Identities = 20/35 (57%), Positives = 27/35 (77%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
+FAL+D N+ Y SCER+F P L P++VLS+NDG
Sbjct 13 VFALVDCNSFYASCERVFRPDLAKEPIVVLSNNDG 47
>A0A0H2V735 UmuC protein [Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC)]
Length=422
Score = 49.7 bits (117), Expect = 4e-12
Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
+FAL D+N Y SCE +F P L G+PV+VLS+NDG
Sbjct 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDG 35
>Q9Z3S8 RulB [Pseudomonas syringae pv. tomato]
Length=78
Score = 45.1 bits (105), Expect = 3e-11
Identities = 20/35 (57%), Positives = 24/35 (69%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
+F L D N Y SCER+F P L P++VLSSNDG
Sbjct 13 VFGLADGNAFYASCERVFRPDLAKVPIVVLSSNDG 47
>Q9RR42 MucB [IncT plasmid R394]
Length=339
Score = 47.4 bits (111), Expect = 3e-11
Identities = 19/34 (56%), Positives = 27/34 (79%), Gaps = 0/34 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSND 52
++ LIDIN+ Y +CE+ F P L G+PV+VLS+ND
Sbjct 1 MYGLIDINSCYCACEQAFRPDLAGKPVVVLSNND 34
Score = 17.7 bits (34), Expect = 1.1
Identities = 6/14 (43%), Positives = 8/14 (57%), Gaps = 0/14 (0%)
Query 39 KLNGRPVIVLSSND 52
+L G P + L ND
Sbjct 227 ELRGEPCMALDEND 240
Lambda K H a alpha
0.328 0.141 0.422 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 229710
Database: 01afc601ca9d7863f32494f44b3b3a8d.TrEMBL.fasta
Posted date: May 11, 2024 9:54 AM
Number of letters in database: 8,497
Number of sequences in database: 24
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
