BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1bcb3b80920e3aacd8240de348858da2.SwissProt.fasta
15 sequences; 4,611 total letters
Query= ACIAD2742
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
P52689 Probable HTH-type transcriptional regulator LtrA [Klebsiel... 338 4e-120
P45463 HTH-type transcriptional activator TtdR [Escherichia coli ... 167 6e-53
Q8XBK9 HTH-type transcriptional activator TtdR [Escherichia coli ... 166 8e-53
Q0TD46 HTH-type transcriptional activator TtdR [Escherichia coli ... 165 2e-52
Q1R6S1 HTH-type transcriptional activator TtdR [Escherichia coli ... 164 6e-52
Q8FDH0 HTH-type transcriptional activator TtdR [Escherichia coli ... 164 6e-52
P43011 Uncharacterized HTH-type transcriptional regulator HI_1364... 157 2e-49
P76250 HTH-type transcriptional regulator DmlR [Escherichia coli ... 157 4e-49
P72131 HTH-type transcriptional regulator PtxR [Pseudomonas aerug... 150 1e-46
A0A0H2ZDG9 HTH-type transcriptional repressor PA14_22550 [Pseudom... 147 2e-45
P37641 Uncharacterized HTH-type transcriptional regulator YhjC [E... 145 8e-45
P67662 HTH-type transcriptional activator AaeR [Escherichia coli ... 131 3e-39
Q01610 Putative transcriptional regulator [Pseudomonas aeruginosa... 128 3e-38
P77333 HTH-type transcriptional regulator PgrR [Escherichia coli ... 122 7e-36
P37459 Probable HTH-type transcriptional regulator SinR [Salmonel... 102 2e-28
>P52689 Probable HTH-type transcriptional regulator LtrA [Klebsiella
pneumoniae]
Length=309
Score = 338 bits (868), Expect = 4e-120
Identities = 159/293 (54%), Positives = 218/293 (74%), Gaps = 0/293 (0%)
Query 7 IHLLQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSE 66
++LL ++A+FV++V+ GSFS +RQ G TPSAVSR++SRLE+ +G +LLQRTTRKLRLS+
Sbjct 3 LNLLPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRLSD 62
Query 67 SGQQIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPK 126
+G+ IY++ M+ AA+ M S+G QG + +SVPKAVG F+IHP M F RYP+
Sbjct 63 AGETIYQHAQQMLEAARQAMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRYPQ 122
Query 127 IDVQMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPEH 186
+DV + LEDR +DFIDDG+DLA+RITD P GL G+ L+ I H++CAT YL HGTP
Sbjct 123 VDVCLRLEDRPLDFIDDGIDLALRITDTPSPGLHGKPLMPIRHVICATEAYLQQHGTPYT 182
Query 187 PHDLKQHACIYLGEQPSDSKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIASLP 246
P DL+ H+CI LGE P+D++WKF++ K+ TV GRY+ANHT +RLDA +HLGI SLP
Sbjct 183 PQDLRAHSCISLGETPADARWKFRREGKTETVQTYGRYAANHTAVRLDAVRQHLGIGSLP 242
Query 247 YFVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLAE 299
F AR AL +GD++QVLP+W F + YSGD WLL+ +H+P ++ +I +L+E
Sbjct 243 LFTAREALANGDIVQVLPEWEFISSYSGDLWLLWAGDKHMPARMRAMIDYLSE 295
>P45463 HTH-type transcriptional activator TtdR [Escherichia coli
(strain K12)]
Length=310
Score = 167 bits (422), Expect = 6e-53
Identities = 96/291 (33%), Positives = 154/291 (53%), Gaps = 5/291 (2%)
Query 9 LLQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESG 68
L +++ + V++V +GSFS + +G TP+ V++ I LE L T LL R+ R + L+ESG
Sbjct 7 LAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESG 66
Query 69 QQIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKID 128
Q+ YE+ L+++ Q ++ Q P+G +R+ G I P + E ++ YP++
Sbjct 67 QRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQ 126
Query 129 VQMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPEHPH 188
V L DR +D + D +DL IRI D+ P + L + +LCA PEYL + P+
Sbjct 127 VHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQ 186
Query 189 DLKQHACIYLGEQP-SDSKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIASLPY 247
+L +H C+ E+ + W+ G + +V V G S+N I L AL+ GI
Sbjct 187 ELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246
Query 248 FVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLA 298
+ LESG L+QVLP++ S + W +Y + KL V ++FLA
Sbjct 247 WDVLPFLESGKLVQVLPEY----AQSANIWAVYREPLYRSMKLRVCVEFLA 293
>Q8XBK9 HTH-type transcriptional activator TtdR [Escherichia coli
O157:H7]
Length=310
Score = 166 bits (421), Expect = 8e-53
Identities = 96/291 (33%), Positives = 154/291 (53%), Gaps = 5/291 (2%)
Query 9 LLQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESG 68
L +++ + V++V +GSFS + +G TP+ V++ I LE L T LL R+ R + L+ESG
Sbjct 7 LAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESG 66
Query 69 QQIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKID 128
Q+ YE+ L+++ Q ++ Q P+G +R+ G I P + E ++ YP++
Sbjct 67 QRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQ 126
Query 129 VQMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPEHPH 188
V L DR +D + D +DL IRI D+ P + L + +LCA PEYL + P+
Sbjct 127 VYFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQ 186
Query 189 DLKQHACIYLGEQP-SDSKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIASLPY 247
+L +H C+ E+ + W+ G + +V V G S+N I L AL+ GI
Sbjct 187 ELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246
Query 248 FVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLA 298
+ LESG L+QVLP++ S + W +Y + KL V ++FLA
Sbjct 247 WDVLPFLESGKLVQVLPEY----AQSANIWAVYREPLYRSMKLRVCVEFLA 293
>Q0TD46 HTH-type transcriptional activator TtdR [Escherichia coli
O6:K15:H31 (strain 536 / UPEC)]
Length=310
Score = 165 bits (418), Expect = 2e-52
Identities = 95/291 (33%), Positives = 154/291 (53%), Gaps = 5/291 (2%)
Query 9 LLQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESG 68
L +++ + V++V +GSFS + +G TP+ V++ I LE L T LL R+ R + L+ESG
Sbjct 7 LAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESG 66
Query 69 QQIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKID 128
Q+ YE+ L+++ Q ++ Q P+G +R+ G I P + E ++ YP++
Sbjct 67 QRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQ 126
Query 129 VQMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPEHPH 188
V L DR +D + D +DL IRI D+ P + L + +LCA PEYL + P+
Sbjct 127 VHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQ 186
Query 189 DLKQHACIYLGEQP-SDSKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIASLPY 247
+L +H C+ E+ + W+ G + +V V G S+N I L AL+ GI
Sbjct 187 ELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246
Query 248 FVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLA 298
+ LESG L++VLP++ S + W +Y + KL V ++FLA
Sbjct 247 WDVLPFLESGKLVRVLPEY----AQSANIWAVYREPLYRSMKLRVCVEFLA 293
>Q1R6S1 HTH-type transcriptional activator TtdR [Escherichia coli
(strain UTI89 / UPEC)]
Length=310
Score = 164 bits (415), Expect = 6e-52
Identities = 95/291 (33%), Positives = 153/291 (53%), Gaps = 5/291 (2%)
Query 9 LLQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESG 68
L +++ + V++V +GSFS + +G TP+ V++ I LE L T LL R+ R + L+ESG
Sbjct 7 LAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESG 66
Query 69 QQIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKID 128
Q+ YE+ L+++ Q ++ Q P+G +R+ G I P + E ++ YP++
Sbjct 67 QRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQ 126
Query 129 VQMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPEHPH 188
V L DR +D + D +DL IRI D P + L + +LCA PEYL + P+
Sbjct 127 VHFELFDRQIDLVQDNIDLDIRINDAIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQ 186
Query 189 DLKQHACIYLGEQP-SDSKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIASLPY 247
+L +H C+ E+ + W+ G + +V V G S+N I L AL+ GI
Sbjct 187 ELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246
Query 248 FVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLA 298
+ LESG L++VLP++ S + W +Y + KL V ++FLA
Sbjct 247 WDVLPFLESGKLVRVLPEY----AQSANIWAVYREPLYRSMKLRVCVEFLA 293
>Q8FDH0 HTH-type transcriptional activator TtdR [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=310
Score = 164 bits (415), Expect = 6e-52
Identities = 95/291 (33%), Positives = 153/291 (53%), Gaps = 5/291 (2%)
Query 9 LLQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESG 68
L +++ + V++V +GSFS + +G TP+ V++ I LE L T LL R+ R + L+ESG
Sbjct 7 LAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESG 66
Query 69 QQIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKID 128
Q+ YE+ L+++ Q ++ Q P+G +R+ G I P + E ++ YP++
Sbjct 67 QRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQ 126
Query 129 VQMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPEHPH 188
V L DR +D + D +DL IRI D P + L + +LCA PEYL + P+
Sbjct 127 VHFELFDRQIDLVQDNIDLDIRINDAIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQ 186
Query 189 DLKQHACIYLGEQP-SDSKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIASLPY 247
+L +H C+ E+ + W+ G + +V V G S+N I L AL+ GI
Sbjct 187 ELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246
Query 248 FVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLA 298
+ LESG L++VLP++ S + W +Y + KL V ++FLA
Sbjct 247 WDVLPFLESGKLVRVLPEY----AQSANIWAVYREPLYRSMKLRVCVEFLA 293
>P43011 Uncharacterized HTH-type transcriptional regulator HI_1364
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd)]
Length=288
Score = 157 bits (396), Expect = 2e-49
Identities = 87/282 (31%), Positives = 154/282 (55%), Gaps = 3/282 (1%)
Query 10 LQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESGQ 69
L ++IF KV+ET SF+ ++Q + + S+ +S+LE+ L TRLLQRTTRK+ +E+G
Sbjct 4 LNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGM 63
Query 70 QIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKIDV 129
Y+ C ++ S Q + QG + +SVP+ G I P++P F+ ++P + +
Sbjct 64 MYYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHI 123
Query 130 QMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPEHPHD 189
++ D+ +D + +G DLA+RI L+ R++ A+P YL +G P+ P D
Sbjct 124 EVEFNDKKIDLLSEGYDLALRIGYMEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDD 183
Query 190 LKQHACIYLGEQPSDSKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIASLPYFV 249
L+ H + + W + +++ ++ + +N L+ A LGIA+LP F+
Sbjct 184 LEHHNGLLYKNAMNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANLPKFI 243
Query 250 ARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLS 291
A E G+LI++LP++ + + ++YP RHLP K++
Sbjct 244 LGRAFEKGELIEILPEYKQQKL---EIHVVYPNRRHLPIKVT 282
>P76250 HTH-type transcriptional regulator DmlR [Escherichia coli
(strain K12)]
Length=307
Score = 157 bits (396), Expect = 4e-49
Identities = 91/302 (30%), Positives = 156/302 (52%), Gaps = 6/302 (2%)
Query 9 LLQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESG 68
LL ++ +F+ V F+ + ++G +P+ VS+ I+ LE+ L LL RTTR++ ++E G
Sbjct 6 LLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEG 65
Query 69 QQIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKID 128
++IYE ++ +M PQG +R+ G ++ P + + YP+++
Sbjct 66 ERIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALLALAKAYPQLE 125
Query 129 VQMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPEHPH 188
++ +EDR VD +++GVDL IRI D L+ R+L +LCA+PE++A HG P+H
Sbjct 126 LRFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARKLATNYRILCASPEFIAQHGAPKHLT 185
Query 189 DLKQHACIYLGEQPSD-SKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIASLPY 247
DL C+ + E+ W+ + + V G S+NH I L GIA +
Sbjct 186 DLSALPCLVIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIALRSW 245
Query 248 FVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLAEKLAQE-PN 306
+ + SG L+QVLP++ Y + W +Y K+ + ++FL + A+ PN
Sbjct 246 WDVSENIASGHLVQVLPEY----YQPANVWAVYVSRLATSAKVRITVEFLRQYFAEHYPN 301
Query 307 LS 308
S
Sbjct 302 FS 303
>P72131 HTH-type transcriptional regulator PtxR [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=312
Score = 150 bits (380), Expect = 1e-46
Identities = 89/298 (30%), Positives = 149/298 (50%), Gaps = 7/298 (2%)
Query 10 LQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESGQ 69
L + FV V E SF+ + +G + S +S + RLE LG +LL RTTR++ L++ G+
Sbjct 13 LNHLYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGE 72
Query 70 QIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKIDV 129
++ M+ + EP G +R++ P+ + I F++++PK+ V
Sbjct 73 LLFGVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQV 132
Query 130 QMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPEHPHD 189
+ML +D++ D + +DLA+RI GL +L + + ATP YLA PHD
Sbjct 133 EMLADDQFSDLVGQRIDLAVRIGWPRDSGLHASKLCDFQQVAVATPGYLAGLPPVLQPHD 192
Query 190 LKQHACIYLGEQPSDS--KWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIASLPY 247
L + C ++G + W F++ + TV +GR AN+T L G++ LP
Sbjct 193 LAR--CEWIGHTRLSTPWTWTFERQRERATVQTRGRLLANNTLAVYRLVLDGAGVSVLPS 250
Query 248 FVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLAEKLAQEP 305
F+ + G L+++LP W G + LYP R++P ++ I+ L E L +EP
Sbjct 251 FLVAREIARGRLVRLLPGWRLP---QGGIYALYPSARYMPVRVRAFIESLREHLGREP 305
>A0A0H2ZDG9 HTH-type transcriptional repressor PA14_22550 [Pseudomonas
aeruginosa (strain UCBPP-PA14)]
Length=317
Score = 147 bits (372), Expect = 2e-45
Identities = 89/303 (29%), Positives = 151/303 (50%), Gaps = 11/303 (4%)
Query 10 LQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESGQ 69
L MA FVKVV+ GSF+ + +G + VS+ +S LEK LG RLL RTTR L L+ G
Sbjct 4 LTAMATFVKVVDAGSFTRAADALGLPKARVSQRVSDLEKHLGVRLLNRTTRALSLTHDGS 63
Query 70 QIYENC---LDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPK 126
++ C L ++ +A ++ A P G +R+ + ++I P + +F RYP+
Sbjct 64 AYFDKCQVLLQQIDELEATLRGGT---ATPIGRLRVDSLITIARWVIAPRLHDFQARYPR 120
Query 127 IDVQMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPEH 186
I +++ DR + ++DG+D IR ++ R L +I L A+PEYLA G +
Sbjct 121 IQLRLSSSDRISNLLEDGIDCTIRGGALKDSSMIARHLCDIQMGLYASPEYLASIGGVDS 180
Query 187 PHDLKQHACI--YLGEQPSDSKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIAS 244
P+DL Q + + G + + W+ + G + V + + + A + GI
Sbjct 181 PNDLSQFRRLSWFSGRERNPFMWELESGPERFVVQSGDGMQFDEPDVAISACMAGSGICP 240
Query 245 LPYFVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLAEKLAQE 304
F + +G L+ VLP W+F + ++YP +RHL ++ + ++ E A+
Sbjct 241 GAPFAVAGFVRAGKLVPVLPQWHFS---AAPVHVIYPGSRHLSVRVRCFVNWVMELFAEN 297
Query 305 PNL 307
P +
Sbjct 298 PEI 300
>P37641 Uncharacterized HTH-type transcriptional regulator YhjC
[Escherichia coli (strain K12)]
Length=299
Score = 145 bits (366), Expect = 8e-45
Identities = 93/293 (32%), Positives = 146/293 (50%), Gaps = 9/293 (3%)
Query 10 LQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESGQ 69
+ M +F+KV E SFS + +VSR I LE LGT+LLQRTTR+++L+ G
Sbjct 4 IHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGM 63
Query 70 QIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKIDV 129
Y+ D+++ + Q G +R+ +P + ++ P + EFL +P I++
Sbjct 64 TYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGIEL 123
Query 130 QMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPEHPHD 189
++ DR VD + DG D IR P G++ R L ++ + CA+P YL G P+ P D
Sbjct 124 ELSSHDRPVDILHDGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDD 183
Query 190 LKQHACI----YLGEQPSDSKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIASL 245
L HA + +LG P + G + G + N + L A L LGI +
Sbjct 184 LTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKSG--GMLTVNSSENYLTAGLAGLGIIQI 241
Query 246 PYFVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLA 298
P R AL +G LI+VLP + + L+YP R L ++++ +Q+LA
Sbjct 242 PRIAVREALRAGRLIEVLPGYRAEPL---SLSLVYPQRRELSRRVNLFMQWLA 291
>P67662 HTH-type transcriptional activator AaeR [Escherichia coli
(strain K12)]
Length=309
Score = 131 bits (329), Expect = 3e-39
Identities = 87/307 (28%), Positives = 145/307 (47%), Gaps = 9/307 (3%)
Query 10 LQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESGQ 69
L+ M++F KVVE GSF+ +RQ+ + S++S+ +S+LE L +LL R+TR + L+E+G+
Sbjct 4 LKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGR 63
Query 70 QIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKIDV 129
Y+ C M++ Q V + F+ P GT+R+ + ++ + L+ YP + V
Sbjct 64 IYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSV 123
Query 130 QMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPEHPHD 189
++ D I DG+D+ IR+ L RRL + ++CA YL +G PE P D
Sbjct 124 NLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPAD 183
Query 190 LKQHACIYLGEQPSDSKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIASLPYFV 249
L H+ + +P + S + +GR+ N + GIA +P
Sbjct 184 LSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYVPLMW 243
Query 250 ARHALESGDLIQVLPDWYFKTYYSGD---AWLLYPPTRHLPPKLSVLIQFLAEKLAQEPN 306
+ + G+L +LP Y D + LY LP K+ V+I L + +
Sbjct 244 VINEINRGELEILLP------RYQSDPRPVYALYTEKDKLPLKVQVVINSLTDYFVEVGK 297
Query 307 LSSFFQG 313
L G
Sbjct 298 LFQEMHG 304
>Q01610 Putative transcriptional regulator [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=306
Score = 128 bits (322), Expect = 3e-38
Identities = 90/296 (30%), Positives = 140/296 (47%), Gaps = 16/296 (5%)
Query 10 LQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESGQ 69
L ++ FV V G+F+ + Q+G T SA+S++IS LE L RLL RTTR + + +G+
Sbjct 6 LNDLLSFVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAGE 65
Query 70 QIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKIDV 129
++ + + +A + +P GTVR++ + ++ P + L YP I V
Sbjct 66 RLLNAIGNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIKV 125
Query 130 QMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLIEIG----HLLCATPEYLAMHGTPE 185
+ + + D + D D +R+ D ++ + IG + A P Y A H P
Sbjct 126 EFDINYGFRDIVADRFDAGVRLGDTIDKDMIA---VPIGPPVRMAVVAAPAYFAAHPKPR 182
Query 186 HPHDLKQHACIYLGEQPSDS--KWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLGIA 243
P DL H CI + Q W FQ+ + + V V G+ N + +DAAL LGIA
Sbjct 183 SPRDLVDHNCINMRMQSGGGLYAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIA 242
Query 244 SLPYFVARHALESGDLIQVLPDW--YFKTYYSGDAWLLYPPTRHLPPKLSVLIQFL 297
LP +E G L++VL +W F YY L YP R P S+++ L
Sbjct 243 WLPEEEFAPHIEEGRLLRVLENWCPLFPGYY-----LYYPNRRQPSPAFSLVVDAL 293
>P77333 HTH-type transcriptional regulator PgrR [Escherichia coli
(strain K12)]
Length=299
Score = 122 bits (305), Expect = 7e-36
Identities = 81/299 (27%), Positives = 144/299 (48%), Gaps = 16/299 (5%)
Query 10 LQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESGQ 69
+ ++ FV V E SF+ + ++ SA+S+ + R+E+ LG RLL RTTR + +E+G+
Sbjct 6 IADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGE 65
Query 70 QIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKIDV 129
+ M++ + M S P GT+R++ + ++ P M FL+ +P+ID+
Sbjct 66 HLLSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDI 125
Query 130 QMLLEDRYVDFIDDGVDLAIRITDQPPGGLMGRRLI------EIGHLLCATPEYLAMHGT 183
Q+ ++ D + + D +R+ GG M + +I +I + +P+Y +
Sbjct 126 QLTIDYGLTDVVSERFDAGVRL-----GGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSV 180
Query 184 PEHPHDLKQHACI--YLGEQPSDSKWKFQQGSKSITVAVKGRYSANHTGIRLDAALKHLG 241
P L H I YL + ++W+ +G + + V ++G+ N + +DAA+ G
Sbjct 181 PTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHG 240
Query 242 IASLPYFVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLAEK 300
+A LPY A++ LI+VL + T L YP RH S+ I L K
Sbjct 241 LAYLPYDQVERAIKEKKLIRVLDKF---TPDLPGYHLYYPHRRHAGSAFSLFIDRLKYK 296
>P37459 Probable HTH-type transcriptional regulator SinR [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=315
Score = 102 bits (253), Expect = 2e-28
Identities = 77/305 (25%), Positives = 149/305 (49%), Gaps = 12/305 (4%)
Query 10 LQEMAIFVKVVETGSFSETSRQMGSTPSAVSRAISRLEKALGTRLLQRTTRKLRLSESGQ 69
+++ IF+KV E G+ S +R++ + SAVS+++SRLE ++ LL+R + L L+ +GQ
Sbjct 10 MRDWMIFIKVAEVGNLSRAARELDISISAVSKSLSRLENSIEVTLLRRDSHHLELTGAGQ 69
Query 70 QIYENCLDMVNAAQAVMQSSGQFHAEPQGTVRMSVPKAVGHFMIHPHMPEFLQRYPKIDV 129
Y + + ++ Q+++ +G+++ S P V F+ + + EF YP D
Sbjct 70 TAYASMKRITSSFQSLLDELRNPDKIIRGSIKFSAPAIVCEFLANKWIWEFTASYP--DT 127
Query 130 QMLLEDR-YVDFIDDGV---DLAIRITDQPPGGLMGRRLIEIGHLLCATPEYLAMHGTPE 185
++ L+ R DF + +L + L+ R++ + +LCA+P+Y+ +G
Sbjct 128 KIYLDSRERSDFFSKSLEFDELVFKSGIIESEDLVYRKISPLKLVLCASPKYIRKYGRIS 187
Query 186 HPHDLKQHACIYLGEQPSDSKWKF--QQGSKSITVAVKGRYSANHTGIRLDAALKHLGIA 243
HP DL+ H + L Q S +I+ AV S+N+ L+ L+ GI
Sbjct 188 HPGDLENHIIVGLHNHGLSGPLTLFRQDESYTISGAVNVHLSSNNLLSVLNLVLEGKGIN 247
Query 244 SL-PYFVARHALESGDLIQVLPDWYFKTYYSGDAWLLYPPTRHLPPKLSVLIQFLAEKLA 302
+ P ++A L++ +L +LP+W +L++ ++ P + F+ +K
Sbjct 248 LMTPAWLATKYLKNNELEIILPEWRVPDL---PIYLVWRHRQYYSPLFQRFLSFIEDKWN 304
Query 303 QEPNL 307
P +
Sbjct 305 NRPQI 309
Lambda K H a alpha
0.322 0.137 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1070433
Database: 1bcb3b80920e3aacd8240de348858da2.SwissProt.fasta
Posted date: Jun 1, 2024 10:02 PM
Number of letters in database: 4,611
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
