BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 602c7832d8c8b75cdd522c54b4304503.SwissProt.fasta
           1 sequences; 141 total letters



Query= ACIAD2746

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P29939 Uncharacterized transporter in cobO 3'region [Sinorhizobiu...  38.1    2e-08


>P29939 Uncharacterized transporter in cobO 3'region [Sinorhizobium 
sp]
Length=141

 Score = 38.1 bits (87),  Expect = 2e-08
 Identities = 20/72 (28%), Positives = 36/72 (50%), Gaps = 0/72 (0%)

Query  57   WLYIVIAGISQIYATALMVKLFQQKNYAIGVGLAKSEAILAALVGVLFLQEHLTAWGWVG  116
            WL++ ++G++   +     +  +  + A    L K   ++ A+ GVLFL E L    W+G
Sbjct  68   WLFLALSGLATGASWLAYFRALKLGDAARVAPLDKLSIVMVAIFGVLFLGEKLNLMNWLG  127

Query  117  VSIGAVAVFLLS  128
            V+  A    LL+
Sbjct  128  VAFIAAGALLLA  139


 Score = 27.7 bits (60),  Expect = 6e-05
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query  205  WQRIGLTFKVSVCSFLASLGWFSAMSMQTVAIVKTLGQVEILFSLLISAFFFKEKLAKTD  264
            W  + L+   +  S+LA   +F A+ +   A V  L ++ I+   +    F  EKL   +
Sbjct  68   WLFLALSGLATGASWLA---YFRALKLGDAARVAPLDKLSIVMVAIFGVLFLGEKLNLMN  124

Query  265  HLGLWLVIVAAIMV  278
             LG+  +   A+++
Sbjct  125  WLGVAFIAAGALLL  138


 Score = 13.5 bits (23),  Expect = 2.9
 Identities = 13/46 (28%), Positives = 21/46 (46%), Gaps = 1/46 (2%)

Query  121  AVAVFLLSKGRQHSELSFKTLIIGLGSGLCFAITSLLVREASLELG  166
            A  V    + ++ SE+  +T +    SGL     S L    +L+LG
Sbjct  48   AAIVAATGQWQKPSEIPGRTWLFLALSGLATG-ASWLAYFRALKLG  92



Lambda      K        H        a         alpha
   0.333    0.141    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 31702


  Database: 602c7832d8c8b75cdd522c54b4304503.SwissProt.fasta
    Posted date:  May 20, 2024  10:32 PM
  Number of letters in database: 141
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40