BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 81122b0bd9cb7e73793ce42d89308bc8.SwissProt.fasta
1 sequences; 182 total letters
Query= ACIAD2788
Length=421
Score E
Sequences producing significant alignments: (Bits) Value
Q56957 Attachment invasion locus protein [Yersinia pseudotubercul... 37.7 7e-08
>Q56957 Attachment invasion locus protein [Yersinia pseudotuberculosis
serotype I (strain IP32953)]
Length=182
Score = 37.7 bits (86), Expect = 7e-08
Identities = 34/114 (30%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query 281 NQFGAISEILTSEATGGEYTKGFKLDTYQKDQYSATIGLGQQFTDKWSASTDISWDSGTG 340
N +G I + E GFKL YS T G + + S + G
Sbjct 65 NDWGVIGSFAQTRRGFEESVDGFKLIDGDFKYYSVTAGPVFRINEYVSLYGLLGAGHGKA 124
Query 341 HPASTLGPM----KGSWSLGLGAQFNPAPNYFIAGGVKYFWLGDVTSEDGTYYL 390
+S G K S + G G QFNP PN+ I +Y L DV + GT+ L
Sbjct 125 KVSSIFGQSESRSKTSLAYGAGLQFNPHPNFVIDASYEYSKLDDV--KVGTWML 176
Score = 21.2 bits (43), Expect = 0.020
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query 310 KDQYSATIGLGQQFTDKWSASTDISWDSGTGHPASTLGPMK-GSWSLGLGAQF 361
+ + S G G QF + D S++ S L +K G+W LG G +F
Sbjct 136 RSKTSLAYGAGLQFNPHPNFVIDASYEY------SKLDDVKVGTWMLGAGYRF 182
Score = 16.9 bits (32), Expect = 0.46
Identities = 6/18 (33%), Positives = 12/18 (67%), Gaps = 0/18 (0%)
Query 395 IKTVAEQAEFRNNHALAY 412
+ ++ Q+E R+ +LAY
Sbjct 126 VSSIFGQSESRSKTSLAY 143
Score = 16.9 bits (32), Expect = 0.46
Identities = 6/14 (43%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query 191 DAELG-WLAGASYQ 203
D ++G W+ GA Y+
Sbjct 168 DVKVGTWMLGAGYR 181
Score = 15.0 bits (27), Expect = 1.9
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 17/69 (25%)
Query 152 FKNFQIYGGPVYQ--------------EVKGKVSF---RGAAYTEAYNGYNANFKKDAEL 194
FK + + GPV++ K KVS + + ++ Y A + +
Sbjct 94 FKYYSVTAGPVFRINEYVSLYGLLGAGHGKAKVSSIFGQSESRSKTSLAYGAGLQFNPHP 153
Query 195 GWLAGASYQ 203
++ ASY+
Sbjct 154 NFVIDASYE 162
Score = 15.0 bits (27), Expect = 1.9
Identities = 10/31 (32%), Positives = 13/31 (42%), Gaps = 6/31 (19%)
Query 110 FGAEIAYPLRPN------NTYSDNDTSKEGT 134
+GA + + PN YS D K GT
Sbjct 143 YGAGLQFNPHPNFVIDASYEYSKLDDVKVGT 173
Score = 13.9 bits (24), Expect = 4.5
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 0/23 (0%)
Query 162 VYQEVKGKVSFRGAAYTEAYNGY 184
VY E + +S A +GY
Sbjct 24 VYAEGESSISIGYAQSRVKEDGY 46
Score = 13.9 bits (24), Expect = 4.5
Identities = 3/14 (21%), Positives = 7/14 (50%), Gaps = 0/14 (0%)
Query 183 GYNANFKKDAELGW 196
G+N ++ + W
Sbjct 54 GFNLKYRYEFNNDW 67
Score = 13.9 bits (24), Expect = 4.5
Identities = 6/16 (38%), Positives = 8/16 (50%), Gaps = 0/16 (0%)
Query 266 TSLRWVNWKKFETRPN 281
TSL + +F PN
Sbjct 139 TSLAYGAGLQFNPHPN 154
Score = 13.5 bits (23), Expect = 5.9
Identities = 4/7 (57%), Positives = 5/7 (71%), Gaps = 0/7 (0%)
Query 414 LKFGYRF 420
LK+ Y F
Sbjct 57 LKYRYEF 63
Lambda K H a alpha
0.318 0.135 0.405 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 62172
Database: 81122b0bd9cb7e73793ce42d89308bc8.SwissProt.fasta
Posted date: May 20, 2024 9:03 PM
Number of letters in database: 182
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
