BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 20ab7a82415dafa2083c76c8c223bdf9.SwissProt.fasta
           5 sequences; 1,337 total letters



Query= ACIAD2840

Length=259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6XBH1 Glycerophosphodiester phosphodiesterase GpdQ [Klebsiella a...  48.1    2e-10
E3GCF1 Glycerophosphodiester phosphodiesterase GpdQ [Enterobacter...  47.4    3e-10
D5V0N9 Probable glycerophosphodiester phosphodiesterase GpdQ [Arc...  45.1    2e-09
P05675 Probable cyclic nucleotide phosphodiesterase syc0937_d [Sy...  39.3    1e-07
Q93GX3 Probable glycerophosphodiester phosphodiesterase GpdQ [Str...  38.5    2e-07


>Q6XBH1 Glycerophosphodiester phosphodiesterase GpdQ [Klebsiella 
aerogenes]
Length=274

 Score = 48.1 bits (113),  Expect = 2e-10
 Identities = 28/81 (35%), Positives = 41/81 (51%), Gaps = 11/81 (14%)

Query  1   MLLHLSDLHFGTEKPECLTAIE------DFCRQ-----HRPEVIVVSGDLTQRARFIQFY  49
           +L H+SD HF +   +    I+      D   Q      RP+ +VVSGD+    R  ++ 
Sbjct  2   LLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQ  61

Query  50  NCKQFLESLNVPYLVVPGNHD  70
             +Q L SLN P  ++PGNHD
Sbjct  62  VARQILGSLNYPLYLIPGNHD  82


 Score = 15.8 bits (29),  Expect = 4.9
 Identities = 6/10 (60%), Positives = 7/10 (70%), Gaps = 0/10 (0%)

Query  231  ILNDGRVEHY  240
            I+N GR E Y
Sbjct  51   IVNCGRPEEY  60


>E3GCF1 Glycerophosphodiester phosphodiesterase GpdQ [Enterobacter 
lignolyticus (strain SCF1)]
Length=278

 Score = 47.4 bits (111),  Expect = 3e-10
 Identities = 27/81 (33%), Positives = 42/81 (52%), Gaps = 11/81 (14%)

Query  1   MLLHLSDLHFGTEKPECLTAIE------DFCRQ-----HRPEVIVVSGDLTQRARFIQFY  49
           +L H+SD HF ++  +    I+      D   Q      RP+ +VVSGD+    R  ++ 
Sbjct  2   LLAHISDTHFRSQNHKLYGFIDVNAGNADVVSQLNGLRERPDAVVVSGDIVNCGRPEEYQ  61

Query  50  NCKQFLESLNVPYLVVPGNHD  70
             +Q L +L  P L++PGNHD
Sbjct  62  VARQVLGALRYPLLLIPGNHD  82


 Score = 16.2 bits (30),  Expect = 3.7
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 6/38 (16%)

Query  209  DIHAGTATSYRLYKNL---PNSFNV---ILNDGRVEHY  240
            D++AG A        L   P++  V   I+N GR E Y
Sbjct  23   DVNAGNADVVSQLNGLRERPDAVVVSGDIVNCGRPEEY  60


>D5V0N9 Probable glycerophosphodiester phosphodiesterase GpdQ 
[Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / CCUG 
15893 / LMG 7604 / NCTC 12251 / CI)]
Length=273

 Score = 45.1 bits (105),  Expect = 2e-09
 Identities = 32/123 (26%), Positives = 61/123 (50%), Gaps = 8/123 (7%)

Query  29   RPEVIVVSGDLTQRARFIQFYNCKQFLESLNVPYLVVPGNHDIPLYHLWNRFFSPFVRYQ  88
            +P++++ +GD+T      ++   K+ ++ L+VP+ V+PGNHD             F  Y 
Sbjct  41   KPDLVIFTGDITDNGTNEEYKLFKETVKLLDVPFYVIPGNHDNA-----ENLKREFEEYD  95

Query  89   FFFGELEPTLETEHF--FIVGVNSIRRRYHTRGYISLEQIQKTNEILKQAPSHKLKLVVL  146
            +F      +L  E F   I+G++S   +  + G +S E++    + L + P  K+ L + 
Sbjct  96   WFEENNHLSLVIEDFPIRIIGLDS-SIKGKSYGGLSEERLLWLEKQLNKFPDKKVLLFIH  154

Query  147  HQP  149
            H P
Sbjct  155  HPP  157


>P05675 Probable cyclic nucleotide phosphodiesterase syc0937_d 
[Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)]
Length=255

 Score = 39.3 bits (90),  Expect = 1e-07
 Identities = 31/126 (25%), Positives = 62/126 (49%), Gaps = 15/126 (12%)

Query  26   RQHRPEVIVVSGDLTQRARFIQFYNCKQFLESLNVPYLVVPGNHDIP--LYHLWNRFFSP  83
            +Q  P+++++SGDL++      +   + ++E L  P + + GNHD P  L  +  R  SP
Sbjct  47   KQRSPDLLLLSGDLSEDGSPASYERLRDWVEELGCPAIAIAGNHDQPERLTEICGR--SP  104

Query  84   FVRYQFFFGELEPTLETEHFFIVGVNSIRRRYHTRGYISLEQIQKTNEILKQAPSHKLKL  143
            F+         EP    + + I+ ++S + +    G +  +Q+   ++ L +  S    L
Sbjct  105  FMG--------EPVYSIQGWRIIALDSYQPK-RIDGRLRGDQLDWLDQRLGEDSSP--TL  153

Query  144  VVLHQP  149
            ++LH P
Sbjct  154  LMLHHP  159


>Q93GX3 Probable glycerophosphodiester phosphodiesterase GpdQ 
[Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 
5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)]
Length=257

 Score = 38.5 bits (88),  Expect = 2e-07
 Identities = 24/83 (29%), Positives = 37/83 (45%), Gaps = 17/83 (20%)

Query  2   LLHLSDLHFGT------------EKPECLTAIEDFCRQHRPEVIVVSGDLTQRARFIQFY  49
           + HLSD H  T                C+ A++      RP  +VV+GDL  R    ++ 
Sbjct  1   MAHLSDPHLTTGLLAVDRVAAFSRALRCVLALDP-----RPACVVVTGDLVDRGEAEEYE  55

Query  50  NCKQFLESLNVPYLVVPGNHDIP  72
             ++ +    +P  +VPGNHD P
Sbjct  56  VLREVIARFPLPVHLVPGNHDDP  78


 Score = 16.9 bits (32),  Expect = 2.1
 Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 0/23 (0%)

Query  211  HAGTATSYRLYKNLPNSFNVILN  233
            H G A ++      PN+  V+L+
Sbjct  90   HTGGARAFPYAVEYPNATVVVLS  112



Lambda      K        H        a         alpha
   0.327    0.143    0.457    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 260288


  Database: 20ab7a82415dafa2083c76c8c223bdf9.SwissProt.fasta
    Posted date:  May 13, 2024  4:34 PM
  Number of letters in database: 1,337
  Number of sequences in database:  5



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40