Comparative Genomics

ACIAD2862 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 2abcea7254beed1c19a805529c3e7b6f.SwissProt.fasta
           22 sequences; 3,486 total letters



Query= ACIAD2862

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

B0VSL8 Transcription elongation factor GreA [Acinetobacter bauman...  288     2e-105
Q4FTJ2 Transcription elongation factor GreA [Psychrobacter arctic...  244     1e-87 
A5WDP3 Transcription elongation factor GreA [Psychrobacter sp. (s...  244     1e-87 
Q1QCJ2 Transcription elongation factor GreA [Psychrobacter cryoha...  243     1e-87 
P64281 Transcription elongation factor GreA [Salmonella typhimuri...  219     6e-78 
P64282 Transcription elongation factor GreA [Salmonella typhi]        219     6e-78 
P0A6W6 Transcription elongation factor GreA [Escherichia coli O6:...  219     6e-78 
P0A6W7 Transcription elongation factor GreA [Escherichia coli O15...  219     6e-78 
P0A6W5 Transcription elongation factor GreA [Escherichia coli (st...  219     6e-78 
A1ST36 Transcription elongation factor GreA [Psychromonas ingraha...  217     3e-77 
Q31H97 Transcription elongation factor GreA [Hydrogenovibrio crun...  215     2e-76 
Q7VL00 Transcription elongation factor GreA [Haemophilus ducreyi ...  211     6e-75 
A9R594 Transcription elongation factor GreA [Yersinia pestis bv. ...  211     6e-75 
Q8ZBB3 Transcription elongation factor GreA [Yersinia pestis]         211     6e-75 
P43881 Transcription elongation factor GreA [Haemophilus influenz...  210     2e-74 
Q9L4D3 Transcription elongation factor GreA [Xanthomonas campestr...  182     2e-63 
P27640 Transcription elongation factor GreA [Rickettsia prowazeki...  156     4e-53 
O68546 Transcription elongation factor GreA [Rhizobium leguminosa...  155     1e-52 
P56894 Transcription elongation factor GreA [Rhizobium meliloti (...  153     5e-52 
P80240 Transcription elongation factor GreA [Bacillus subtilis (s...  117     1e-37 
P30128 Transcription elongation factor GreB [Escherichia coli (st...  88.2    2e-26 
P9WMT9 Transcription elongation factor GreA [Mycobacterium tuberc...  72.4    3e-20 


>B0VSL8 Transcription elongation factor GreA [Acinetobacter baumannii 
(strain SDF)]
Length=158

 Score = 288 bits (738),  Expect = 2e-105
 Identities = 143/158 (91%), Positives = 149/158 (94%), Gaps = 0/158 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            MQRYPMTPEGK+ALEKELQ LK+VERPRI QAIAEAREHGDLKENAEYHAAREQQGFCEG
Sbjct  1    MQRYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RIQDIEGKLG  Q+I VK+LEQNGRVVFGVTVTIENLDTEER TYKIVGDDEADFKINKI
Sbjct  61   RIQDIEGKLGTAQVIAVKDLEQNGRVVFGVTVTIENLDTEERNTYKIVGDDEADFKINKI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            SVNSPIA GLLGK EGDE KITTPQGEVEYE+VSVEY+
Sbjct  121  SVNSPIALGLLGKKEGDEVKITTPQGEVEYEVVSVEYL  158


>Q4FTJ2 Transcription elongation factor GreA [Psychrobacter arcticus 
(strain DSM 17307 / VKM B-2377 / 273-4)]
Length=158

 Score = 244 bits (622),  Expect = 1e-87
 Identities = 120/157 (76%), Positives = 135/157 (86%), Gaps = 0/157 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            MQRYPMTP+G  ALE EL+QLKS++RPRI  +IAEAREHGDLKENAEYHAAREQQGFCE 
Sbjct  1    MQRYPMTPQGHAALEAELKQLKSIDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEA  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RI+DIE KLG  QIID   L ++GRV+FGV+V IEN+DTEE K YKIVGDDEADFK  KI
Sbjct  61   RIRDIEAKLGGAQIIDPATLPKDGRVIFGVSVVIENMDTEEEKQYKIVGDDEADFKAGKI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEY  157
            SVNSPIARGL+GKSEGDEA+I TP+G VEYEI+ V Y
Sbjct  121  SVNSPIARGLIGKSEGDEARIETPKGVVEYEIMKVIY  157


>A5WDP3 Transcription elongation factor GreA [Psychrobacter sp. 
(strain PRwf-1)]
Length=158

 Score = 244 bits (622),  Expect = 1e-87
 Identities = 122/157 (78%), Positives = 134/157 (85%), Gaps = 0/157 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            MQRYPMTP+G  ALE EL+QLKSV+RPRI  AIAEAREHGDLKENAEYHAAREQQGFCE 
Sbjct  1    MQRYPMTPQGHAALEAELKQLKSVDRPRITAAIAEAREHGDLKENAEYHAAREQQGFCEA  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RI+DIE KL   Q+ID   L + GRVVFGVTV IENLDTEE+K Y+IVGDDEADFK NKI
Sbjct  61   RIRDIEAKLSGAQVIDPATLPREGRVVFGVTVVIENLDTEEQKRYQIVGDDEADFKNNKI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEY  157
            SVNSPIARGL+GKSEGDEA+I TP G VE+EI+ V Y
Sbjct  121  SVNSPIARGLIGKSEGDEARIETPSGLVEFEIIEVIY  157


>Q1QCJ2 Transcription elongation factor GreA [Psychrobacter cryohalolentis 
(strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 
/ K5)]
Length=158

 Score = 243 bits (621),  Expect = 1e-87
 Identities = 119/157 (76%), Positives = 135/157 (86%), Gaps = 0/157 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            MQRYPMTP+G  ALE EL+QLKS++RPRI  +IAEAREHGDLKENAEYHAAREQQGFCE 
Sbjct  1    MQRYPMTPQGHAALEAELKQLKSIDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEA  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RI+DIE KLG  Q+ID   L ++GRV+FGV+V IEN+DTEE K YKIVGDDEADFK  KI
Sbjct  61   RIRDIEAKLGGAQVIDPTTLPKDGRVIFGVSVVIENMDTEEEKQYKIVGDDEADFKAGKI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEY  157
            SVNSPIARGL+GKSEGDEA+I TP+G VEYEI+ V Y
Sbjct  121  SVNSPIARGLIGKSEGDEARIETPKGVVEYEIMKVIY  157


>P64281 Transcription elongation factor GreA [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=158

 Score = 219 bits (558),  Expect = 6e-78
 Identities = 109/158 (69%), Positives = 125/158 (79%), Gaps = 0/158 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            MQ  PMT  G   L +EL  LKSV RP II AIAEAREHGDLKENAEYHAAREQQGFCEG
Sbjct  1    MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RI+DIE KL   Q+IDV ++  NGRV+FG TVT+ NLDT+E +TY+IVGDDEADFK N I
Sbjct  61   RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            SVNSPIARGL+GK + D   I TP G+VEYE++ VEY+
Sbjct  121  SVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL  158


>P64282 Transcription elongation factor GreA [Salmonella typhi]
Length=158

 Score = 219 bits (558),  Expect = 6e-78
 Identities = 109/158 (69%), Positives = 125/158 (79%), Gaps = 0/158 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            MQ  PMT  G   L +EL  LKSV RP II AIAEAREHGDLKENAEYHAAREQQGFCEG
Sbjct  1    MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RI+DIE KL   Q+IDV ++  NGRV+FG TVT+ NLDT+E +TY+IVGDDEADFK N I
Sbjct  61   RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            SVNSPIARGL+GK + D   I TP G+VEYE++ VEY+
Sbjct  121  SVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL  158


>P0A6W6 Transcription elongation factor GreA [Escherichia coli 
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=158

 Score = 219 bits (558),  Expect = 6e-78
 Identities = 109/158 (69%), Positives = 125/158 (79%), Gaps = 0/158 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            MQ  PMT  G   L +EL  LKSV RP II AIAEAREHGDLKENAEYHAAREQQGFCEG
Sbjct  1    MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RI+DIE KL   Q+IDV ++  NGRV+FG TVT+ NLD++E +TY+IVGDDEADFK N I
Sbjct  61   RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            SVNSPIARGL+GK E D   I TP GEVE+E++ VEY+
Sbjct  121  SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL  158


>P0A6W7 Transcription elongation factor GreA [Escherichia coli 
O157:H7]
Length=158

 Score = 219 bits (558),  Expect = 6e-78
 Identities = 109/158 (69%), Positives = 125/158 (79%), Gaps = 0/158 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            MQ  PMT  G   L +EL  LKSV RP II AIAEAREHGDLKENAEYHAAREQQGFCEG
Sbjct  1    MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RI+DIE KL   Q+IDV ++  NGRV+FG TVT+ NLD++E +TY+IVGDDEADFK N I
Sbjct  61   RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            SVNSPIARGL+GK E D   I TP GEVE+E++ VEY+
Sbjct  121  SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL  158


>P0A6W5 Transcription elongation factor GreA [Escherichia coli 
(strain K12)]
Length=158

 Score = 219 bits (558),  Expect = 6e-78
 Identities = 109/158 (69%), Positives = 125/158 (79%), Gaps = 0/158 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            MQ  PMT  G   L +EL  LKSV RP II AIAEAREHGDLKENAEYHAAREQQGFCEG
Sbjct  1    MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RI+DIE KL   Q+IDV ++  NGRV+FG TVT+ NLD++E +TY+IVGDDEADFK N I
Sbjct  61   RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            SVNSPIARGL+GK E D   I TP GEVE+E++ VEY+
Sbjct  121  SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL  158


>A1ST36 Transcription elongation factor GreA [Psychromonas ingrahamii 
(strain DSM 17664 / CCUG 51855 / 37)]
Length=159

 Score = 217 bits (553),  Expect = 3e-77
 Identities = 105/158 (66%), Positives = 127/158 (80%), Gaps = 0/158 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            M +YPMT  G   L  EL+QLK+V RPRI++AIAEAREHGDLKENAEYHAAREQQGFCEG
Sbjct  1    MVQYPMTANGAAKLRSELKQLKTVTRPRIVKAIAEAREHGDLKENAEYHAAREQQGFCEG  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RIQDIE KL   +IID+  +  NG+V+FG TVTI N++T+   TYKIVGDDEA+ KIN I
Sbjct  61   RIQDIEAKLSNARIIDITNITNNGKVIFGATVTIVNVETDAEVTYKIVGDDEANIKINLI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            SV+SP+ARGL+GK+  DE  I TP G ++YEI+SV+YI
Sbjct  121  SVSSPLARGLIGKTLDDEISIVTPGGTIDYEIISVQYI  158


>Q31H97 Transcription elongation factor GreA [Hydrogenovibrio 
crunogenus (strain DSM 25203 / XCL-2)]
Length=158

 Score = 215 bits (548),  Expect = 2e-76
 Identities = 107/158 (68%), Positives = 125/158 (79%), Gaps = 0/158 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            MQR+PMT EG  AL++ELQ LK VERP +  AIAEAREHGDLKENAEYHAAREQQG  E 
Sbjct  1    MQRHPMTKEGADALQEELQHLKKVERPAVSNAIAEAREHGDLKENAEYHAAREQQGLMEA  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RI+ IE  LG+VQIIDV +L  NG+VVFG TVTI N+DTEE  TYKIVG++EAD K NKI
Sbjct  61   RIKQIESLLGSVQIIDVTKLNPNGKVVFGSTVTILNVDTEEEVTYKIVGEEEADIKHNKI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            SVNSPIAR L+ K EG+E  +  P G +EYEIV ++Y+
Sbjct  121  SVNSPIARALIAKEEGEEITVKAPSGNIEYEIVEIQYV  158


>Q7VL00 Transcription elongation factor GreA [Haemophilus ducreyi 
(strain 35000HP / ATCC 700724)]
Length=158

 Score = 211 bits (538),  Expect = 6e-75
 Identities = 104/157 (66%), Positives = 126/157 (80%), Gaps = 0/157 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            M++ PMT  G   L +EL+ LK+V RP+II AIAEAREHGDLKENAEYHAAREQQGFCEG
Sbjct  1    MKQIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RIQ+IEGKLG  Q+IDV ++  NG+V+FG TV + N+DT+E  TY+IVGDDEA+ K   I
Sbjct  61   RIQEIEGKLGNAQVIDVAKMTNNGKVIFGATVGLVNIDTDEEVTYRIVGDDEANIKEGLI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEY  157
            SVNSPIARGL+GKS  D   I TP G+VE++I+SVEY
Sbjct  121  SVNSPIARGLVGKSVDDSVSIITPGGKVEFDIISVEY  157


>A9R594 Transcription elongation factor GreA [Yersinia pestis 
bv. Antiqua (strain Angola)]
Length=158

 Score = 211 bits (538),  Expect = 6e-75
 Identities = 105/158 (66%), Positives = 123/158 (78%), Gaps = 0/158 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            M++ PMT  G   L +EL  LK V RP+II  IA+AREHGDLKENAEYHAAREQQGFCEG
Sbjct  1    MKQIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEG  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RIQ+IE KL   Q+ID+ ++  NGRV+FG TV + NL+TEE + Y+IVGDDEADFK N I
Sbjct  61   RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTEEEQNYRIVGDDEADFKQNLI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            SVNSPIARGL+GK   D   I TP GEVEYEI+SVEY+
Sbjct  121  SVNSPIARGLIGKEVDDVVVIHTPGGEVEYEILSVEYV  158


>Q8ZBB3 Transcription elongation factor GreA [Yersinia pestis]
Length=158

 Score = 211 bits (538),  Expect = 6e-75
 Identities = 105/158 (66%), Positives = 123/158 (78%), Gaps = 0/158 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            M++ PMT  G   L +EL  LK V RP+II  IA+AREHGDLKENAEYHAAREQQGFCEG
Sbjct  1    MKQIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEG  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RIQ+IE KL   Q+ID+ ++  NGRV+FG TV + NL+TEE + Y+IVGDDEADFK N I
Sbjct  61   RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTEEEQNYRIVGDDEADFKQNLI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            SVNSPIARGL+GK   D   I TP GEVEYEI+SVEY+
Sbjct  121  SVNSPIARGLIGKEVDDVVVIHTPGGEVEYEILSVEYV  158


>P43881 Transcription elongation factor GreA [Haemophilus influenzae 
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=158

 Score = 210 bits (535),  Expect = 2e-74
 Identities = 105/158 (66%), Positives = 122/158 (77%), Gaps = 0/158 (0%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            MQ+ PMT  G   L +EL  LK+V RP II+AIAEAREHGDLKENAEYHAAREQQGFCEG
Sbjct  1    MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG  60

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RIQ+IEGKLG  QIIDV ++  NG+V+FG TV + N +T+E  TY+IVGDDEAD K   I
Sbjct  61   RIQEIEGKLGNAQIIDVSKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            SVNSPIARGL+GK   D   ITTP G VE++I+ V YI
Sbjct  121  SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI  158


>Q9L4D3 Transcription elongation factor GreA [Xanthomonas campestris 
pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 
528 / LMG 568 / P 25)]
Length=158

 Score = 182 bits (463),  Expect = 2e-63
 Identities = 89/156 (57%), Positives = 115/156 (74%), Gaps = 0/156 (0%)

Query  3    RYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEGRI  62
            R PMT +G   L +EL  LKSV+RP +I AIAEAR HGDLKENAEYHAAREQQ F EGRI
Sbjct  2    RAPMTSKGAQRLREELDHLKSVKRPAVITAIAEARAHGDLKENAEYHAAREQQSFIEGRI  61

Query  63   QDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV  122
            + +EG+L   +IID+ +L    ++VFG TVT+ + +T+E K Y+IVGD EAD K+  I++
Sbjct  62   KQLEGELSHAEIIDITKLAAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGLIAI  121

Query  123  NSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            +SP+AR L+GK EGD   I  P G+ EYE+VSV Y+
Sbjct  122  SSPLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL  157


>P27640 Transcription elongation factor GreA [Rickettsia prowazekii 
(strain Madrid E)]
Length=162

 Score = 156 bits (395),  Expect = 4e-53
 Identities = 81/155 (52%), Positives = 109/155 (70%), Gaps = 1/155 (1%)

Query  3    RYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEGRI  62
            ++P+T +G   LE EL+ LK VER +I + IAEAREHGDL ENAEY AARE+Q F EGRI
Sbjct  4    KFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIEGRI  63

Query  63   QDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV  122
            +++E      +IID+ +L     + FG TVT+ + DTEE  TY IVG+ EAD    ++S+
Sbjct  64   KELEDMTARAEIIDICKL-SGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITKKRVSI  122

Query  123  NSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEY  157
             SPIA+ L+GKS GD  ++TTP+G   YE+V+VEY
Sbjct  123  ASPIAKALIGKSVGDFVEVTTPKGLKSYEVVTVEY  157


>O68546 Transcription elongation factor GreA [Rhizobium leguminosarum 
bv. viciae]
Length=158

 Score = 155 bits (391),  Expect = 1e-52
 Identities = 77/157 (49%), Positives = 107/157 (68%), Gaps = 1/157 (1%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            +++ PMTP G + L++EL+  +  ERPRII+AIAEAR HGDL ENAEYHAA+E Q   EG
Sbjct  2    VEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNEG  61

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RI ++E      ++ID+ ++    ++ FG  V + + DTEE KTY+IVGD EAD K  +I
Sbjct  62   RISELEDLTARAEVIDLTKM-SGDKIKFGAKVKLIDEDTEEEKTYQIVGDQEADVKAGRI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEY  157
            S++SPIAR L+GK  GD  ++  P G   YEI+ V +
Sbjct  121  SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW  157


>P56894 Transcription elongation factor GreA [Rhizobium meliloti 
(strain 1021)]
Length=158

 Score = 153 bits (387),  Expect = 5e-52
 Identities = 76/157 (48%), Positives = 108/157 (69%), Gaps = 1/157 (1%)

Query  1    MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG  60
            + + PMT  G + L++EL+  +  ERPRII+AIAEAR HGDL ENAEYHAA+E Q   EG
Sbjct  2    VDKVPMTQGGFVNLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNEG  61

Query  61   RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI  120
            RI ++E  +   ++ID+ ++    ++ FG  V + + DTEE KTY+IVGD EAD K  +I
Sbjct  62   RISELEDLIARAEVIDLSKM-SGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKQGRI  120

Query  121  SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEY  157
            S++SPIAR L+GK  GD  ++  P G   YEI++V++
Sbjct  121  SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW  157


>P80240 Transcription elongation factor GreA [Bacillus subtilis 
(strain 168)]
Length=157

 Score = 117 bits (292),  Expect = 1e-37
 Identities = 66/154 (43%), Positives = 95/154 (62%), Gaps = 6/154 (4%)

Query  4    YPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEGRIQ  63
            +PMT EGK  LE+EL+ LK+V+R  +++ I  AR  GDL EN+EY +A+E+Q F EGR+ 
Sbjct  7    FPMTAEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRVT  66

Query  64   DIEGKLGAVQIIDVKELEQNGRVVFGV--TVTIENLDTEERKTYKIVGDDEADFKINKIS  121
             +E  +   +II+    +  G  V G+  TVT   L   + ++Y IVG  EAD    KIS
Sbjct  67   TLENMIRNAKIIE----DDGGSNVVGLGKTVTFVELPDGDEESYTIVGSAEADPFEGKIS  122

Query  122  VNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSV  155
             +SPIA+ LLGK   +E  + TP GE+  +IV +
Sbjct  123  NDSPIAKSLLGKKVDEEVTVQTPGGEMLVKIVKI  156


>P30128 Transcription elongation factor GreB [Escherichia coli 
(strain K12)]
Length=158

 Score = 88.2 bits (217),  Expect = 2e-26
 Identities = 54/153 (35%), Positives = 87/153 (57%), Gaps = 2/153 (1%)

Query  6    MTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEGRIQDI  65
            +T EG   L++EL  L   ERP + + +  A   GD  ENA+Y   +++    + R++ +
Sbjct  6    VTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL  65

Query  66   EGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISVNSP  125
               L  ++I+D    +Q G+V FG  V IEN D    + ++IVG DE   + + IS++SP
Sbjct  66   TKCLENLKIVDYSP-QQEGKVFFGAWVEIENDDGVTHR-FRIVGYDEIFGRKDYISIDSP  123

Query  126  IARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI  158
            +AR LL K  GD A + TP GE  + + ++EY+
Sbjct  124  MARALLKKEVGDLAVVNTPAGEASWYVNAIEYV  156


>P9WMT9 Transcription elongation factor GreA [Mycobacterium tuberculosis 
(strain ATCC 25618 / H37Rv)]
Length=164

 Score = 72.4 bits (176),  Expect = 3e-20
 Identities = 54/155 (35%), Positives = 79/155 (51%), Gaps = 7/155 (5%)

Query  6    MTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEGRIQDI  65
            +T E    L+ EL QL +  RP I   I + RE GDL+EN  YHAARE+QG  E RI+ +
Sbjct  9    LTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL  67

Query  66   EGKLGAVQIIDVKELEQNGRVVFGVTVTI-ENLDTEERKTYKIVGDDE--ADFKINKISV  122
            +  L   ++ +    +Q+G  + G  V +  N D  + +T+ I    E  +D K+   S 
Sbjct  68   QDLLSNAKVGEAP--KQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKLEVYSP  125

Query  123  NSPIARGLLGKSEGDEAKITTPQGE-VEYEIVSVE  156
            NSP+   L+    G+    T P G  V   +VS E
Sbjct  126  NSPLGGALIDAKVGETRSYTVPNGSTVSVTLVSAE  160



Lambda      K        H        a         alpha
   0.316    0.136    0.373    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 325984


  Database: 2abcea7254beed1c19a805529c3e7b6f.SwissProt.fasta
    Posted date:  May 20, 2024  9:04 PM
  Number of letters in database: 3,486
  Number of sequences in database:  22



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40