BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 32987665b40f473ed78ba6e50022e1d0.SwissProt.fasta
18 sequences; 3,267 total letters
Query= ACIAD2864
Length=134
Score E
Sequences producing significant alignments: (Bits) Value
Q9UTN9 Alkyltransferase-like protein 1 [Schizosaccharomyces pombe... 88.2 3e-27
A6B4U8 DNA base-flipping protein [Vibrio parahaemolyticus serotyp... 84.3 7e-26
P0AFP3 DNA base-flipping protein [Shigella flexneri] 75.9 3e-22
P0AFP2 DNA base-flipping protein [Escherichia coli (strain K12)] 75.9 3e-22
Q6KZ38 Probable methylated-DNA--protein-cysteine methyltransferas... 68.9 2e-18
Q97AL5 Probable methylated-DNA--protein-cysteine methyltransferas... 52.8 1e-12
Q8TI34 Methylated-DNA--protein-cysteine methyltransferase [Methan... 50.4 3e-12
P9WJW5 Methylated-DNA--protein-cysteine methyltransferase [Mycoba... 47.8 3e-11
P9WJW4 Methylated-DNA--protein-cysteine methyltransferase [Mycoba... 47.8 3e-11
P0A697 Methylated-DNA--protein-cysteine methyltransferase [Mycoba... 47.8 3e-11
P26186 Methylated-DNA--protein-cysteine methyltransferase [Cricet... 48.1 4e-11
P24528 Methylated-DNA--protein-cysteine methyltransferase [Rattus... 47.8 5e-11
Q9ZET8 Methylated-DNA--protein-cysteine methyltransferase [Mycoli... 47.0 6e-11
P16455 Methylated-DNA--protein-cysteine methyltransferase [Homo s... 46.2 2e-10
P26187 Methylated-DNA--protein-cysteine methyltransferase [Mus mu... 46.2 2e-10
Q6TDU1 Methylated-DNA--protein-cysteine methyltransferase [Canis ... 44.7 7e-10
Q5SI16 DNA base-flipping protein [Thermus thermophilus (strain AT... 41.6 5e-09
Q58924 Methylated-DNA--protein-cysteine methyltransferase [Methan... 36.2 5e-07
>Q9UTN9 Alkyltransferase-like protein 1 [Schizosaccharomyces pombe
(strain 972 / ATCC 24843)]
Length=108
Score = 88.2 bits (217), Expect = 3e-27
Identities = 38/103 (37%), Positives = 67/103 (65%), Gaps = 6/103 (6%)
Query 31 ELYSQILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRIINAQG 90
E Y+++ + + +P+GKV+TYG+IAR G+P +AR VG +K++ + +PWHR+IN++G
Sbjct 5 EFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRG 64
Query 91 KVSTYHLNQIGENIQLNKLRDEGIVVLNG-----KINLKKYQW 128
+S ++ GE Q ++L +EG+ + K+NL +Y W
Sbjct 65 TISKRDIS-AGEQRQKDRLEEEGVEIYQTSLGEYKLNLPEYMW 106
>A6B4U8 DNA base-flipping protein [Vibrio parahaemolyticus serotype
O3:K6 (strain AQ3810)]
Length=100
Score = 84.3 bits (207), Expect = 7e-26
Identities = 47/95 (49%), Positives = 62/95 (65%), Gaps = 4/95 (4%)
Query 35 QILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRIINAQGKVST 94
QI VI +P GKV+TYG+IA++AG P +AR VG L N+ + S +PW R+IN+QGK+S
Sbjct 7 QIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGKIS- 65
Query 95 YHLNQIGENIQLNKLRDEGIVVLN-GKINLKKYQW 128
L + Q KL EGI V GKI L+KY+W
Sbjct 66 --LKGRDLDRQKQKLEAEGIEVSEIGKIALRKYKW 98
>P0AFP3 DNA base-flipping protein [Shigella flexneri]
Length=129
Score = 75.9 bits (185), Expect = 3e-22
Identities = 37/97 (38%), Positives = 63/97 (65%), Gaps = 8/97 (8%)
Query 35 QILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRIINAQGKVST 94
++ +++A +P G V TYG +A+LAG P+ AR VG LK + + S +PWHR++N G +S
Sbjct 36 RVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGTISL 95
Query 95 YHLNQIGENIQLNK--LRDEGIVVL-NGKINLKKYQW 128
G ++Q + L EG++V +G+I+L++Y+W
Sbjct 96 -----TGPDLQRQRQALLAEGVMVSGSGQIDLQRYRW 127
>P0AFP2 DNA base-flipping protein [Escherichia coli (strain K12)]
Length=129
Score = 75.9 bits (185), Expect = 3e-22
Identities = 37/97 (38%), Positives = 63/97 (65%), Gaps = 8/97 (8%)
Query 35 QILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRIINAQGKVST 94
++ +++A +P G V TYG +A+LAG P+ AR VG LK + + S +PWHR++N G +S
Sbjct 36 RVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGTISL 95
Query 95 YHLNQIGENIQLNK--LRDEGIVVL-NGKINLKKYQW 128
G ++Q + L EG++V +G+I+L++Y+W
Sbjct 96 -----TGPDLQRQRQALLAEGVMVSGSGQIDLQRYRW 127
>Q6KZ38 Probable methylated-DNA--protein-cysteine methyltransferase
/ Endonuclease V [Picrophilus torridus (strain ATCC 700027
/ DSM 9790 / JCM 10055 / NBRC 100828 / KAW 2/3)]
Length=298
Score = 68.9 bits (167), Expect = 2e-18
Identities = 35/102 (34%), Positives = 61/102 (60%), Gaps = 3/102 (3%)
Query 27 IMSTELYSQILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRII 86
+ S +LYS + ++ +P G V TYG +A G K AR GY L + +IP +++I
Sbjct 1 MQSIDLYSYLYSLLGQIPEGMVTTYGDLAVALGDVKAARACGYMLSRNNDTENIPCYKVI 60
Query 87 NAQGKVSTYHLNQIGENIQLNKLRDEGIVVLNGKINLKKYQW 128
+ G + Y L G + ++ +LR++GI + NG+I+LK+Y++
Sbjct 61 MSDGSLGGYSL---GIDEKIRRLRNDGIEINNGRIDLKRYRF 99
>Q97AL5 Probable methylated-DNA--protein-cysteine methyltransferase
/ Endonuclease V [Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)]
Length=321
Score = 52.8 bits (125), Expect = 1e-12
Identities = 31/102 (30%), Positives = 55/102 (54%), Gaps = 3/102 (3%)
Query 21 LSMDNQIMSTELYSQILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDI 80
LS+D + + +L S + ++ +P G V+TYG +A G P AR VG+ L + I
Sbjct 2 LSVDYE--NFDLISYLYNLVRQIPDGMVSTYGDLAEALGDPVAARSVGFMLSINKEPDYI 59
Query 81 PWHRIINAQGKVSTYHLNQIGENIQLNKLRDEGIVVLNGKIN 122
P ++++ G V Y + +G ++ +L +GI + NG I+
Sbjct 60 PCYKVVPHDGSVGNY-THPLGSAEKMRRLIRDGITITNGHIS 100
Score = 16.2 bits (30), Expect = 4.2
Identities = 9/17 (53%), Positives = 10/17 (59%), Gaps = 3/17 (18%)
Query 56 RLAGLPKHARLVGYTLK 72
R AGL HA G +LK
Sbjct 212 RFAGLATHA---GVSLK 225
>Q8TI34 Methylated-DNA--protein-cysteine methyltransferase [Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM
12185 / C2A)]
Length=156
Score = 50.4 bits (119), Expect = 3e-12
Identities = 24/66 (36%), Positives = 36/66 (55%), Gaps = 0/66 (0%)
Query 30 TELYSQILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRIINAQ 89
TE + + +P+G+ TYG+IA+ G PK +R VG A +P HR+I A
Sbjct 74 TEFQKSVWNALKEIPYGETRTYGEIAKNIGNPKASRAVGLANNRNPIAIIVPCHRVIGAN 133
Query 90 GKVSTY 95
GK++ Y
Sbjct 134 GKLTGY 139
>P9WJW5 Methylated-DNA--protein-cysteine methyltransferase [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=165
Score = 47.8 bits (112), Expect = 3e-11
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query 27 IMSTELYSQILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRII 86
+ T+ ++ + + +P+G+ +YG+IA G P AR VG + A +P HR+I
Sbjct 71 LRGTDFQQRVWKALLTIPYGETRSYGEIADQIGAPGAARAVGLANGHNPIAIIVPCHRVI 130
Query 87 NAQGKVSTY--HLNQIGENIQLNKLR 110
A GK++ Y +N+ ++L K R
Sbjct 131 GASGKLTGYGGGINRKRALLELEKSR 156
>P9WJW4 Methylated-DNA--protein-cysteine methyltransferase [Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh)]
Length=165
Score = 47.8 bits (112), Expect = 3e-11
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query 27 IMSTELYSQILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRII 86
+ T+ ++ + + +P+G+ +YG+IA G P AR VG + A +P HR+I
Sbjct 71 LRGTDFQQRVWKALLTIPYGETRSYGEIADQIGAPGAARAVGLANGHNPIAIIVPCHRVI 130
Query 87 NAQGKVSTY--HLNQIGENIQLNKLR 110
A GK++ Y +N+ ++L K R
Sbjct 131 GASGKLTGYGGGINRKRALLELEKSR 156
>P0A697 Methylated-DNA--protein-cysteine methyltransferase [Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97)]
Length=165
Score = 47.8 bits (112), Expect = 3e-11
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query 27 IMSTELYSQILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRII 86
+ T+ ++ + + +P+G+ +YG+IA G P AR VG + A +P HR+I
Sbjct 71 LRGTDFQQRVWKALLTIPYGETRSYGEIADQIGAPGAARAVGLANGHNPIAIIVPCHRVI 130
Query 87 NAQGKVSTY--HLNQIGENIQLNKLR 110
A GK++ Y +N+ ++L K R
Sbjct 131 GASGKLTGYGGGINRKRALLELEKSR 156
>P26186 Methylated-DNA--protein-cysteine methyltransferase [Cricetulus
griseus]
Length=209
Score = 48.1 bits (113), Expect = 4e-11
Identities = 23/58 (40%), Positives = 36/58 (62%), Gaps = 0/58 (0%)
Query 38 EVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRIINAQGKVSTY 95
+++ +V FG++ +Y Q+A LAG PK AR VG ++N IP HR+I + G + Y
Sbjct 105 KLLKVVKFGEMVSYQQLAALAGNPKAARAVGGAMRNNPVPILIPCHRVICSNGSIGNY 162
>P24528 Methylated-DNA--protein-cysteine methyltransferase [Rattus
norvegicus]
Length=209
Score = 47.8 bits (112), Expect = 5e-11
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (3%)
Query 38 EVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRIINAQGKVSTYHL 97
+++ +V FG++ +Y Q+A LAG PK AR VG +++ IP HR+I + G + Y
Sbjct 105 KLLKVVKFGEMVSYQQLAALAGNPKAARAVGGAMRSNPVPILIPCHRVIRSDGAIGNY-- 162
Query 98 NQIGENIQLNKLRDEGI 114
+ G+ ++ L EGI
Sbjct 163 SGGGQTVKEWLLAHEGI 179
>Q9ZET8 Methylated-DNA--protein-cysteine methyltransferase [Mycolicibacterium
paratuberculosis (strain ATCC BAA-968 / K-10)]
Length=165
Score = 47.0 bits (110), Expect = 6e-11
Identities = 22/69 (32%), Positives = 37/69 (54%), Gaps = 0/69 (0%)
Query 27 IMSTELYSQILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRII 86
+ +E ++ + +P+G+ +YG+IA G P AR VG + A +P HR+I
Sbjct 71 LRGSEFQRRVWRALQTIPYGETRSYGEIAEQIGAPGAARAVGLANGHNPIAIVVPCHRVI 130
Query 87 NAQGKVSTY 95
A GK++ Y
Sbjct 131 GASGKLTGY 139
>P16455 Methylated-DNA--protein-cysteine methyltransferase [Homo
sapiens]
Length=207
Score = 46.2 bits (108), Expect = 2e-10
Identities = 23/58 (40%), Positives = 35/58 (60%), Gaps = 0/58 (0%)
Query 38 EVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRIINAQGKVSTY 95
+++ +V FG+V +Y Q+A LAG PK AR VG ++ IP HR++ + G V Y
Sbjct 101 KLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNY 158
>P26187 Methylated-DNA--protein-cysteine methyltransferase [Mus
musculus]
Length=211
Score = 46.2 bits (108), Expect = 2e-10
Identities = 26/77 (34%), Positives = 44/77 (57%), Gaps = 2/77 (3%)
Query 38 EVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRIINAQGKVSTYHL 97
+++ +V FG+ +Y Q+A LAG PK AR VG +++ IP HR++ + G + H
Sbjct 105 KLLKVVKFGETVSYQQLAALAGNPKAARAVGGAMRSNPVPILIPCHRVVRSDGAIG--HY 162
Query 98 NQIGENIQLNKLRDEGI 114
+ G+ ++ L EGI
Sbjct 163 SGGGQAVKEWLLAHEGI 179
>Q6TDU1 Methylated-DNA--protein-cysteine methyltransferase [Canis
lupus familiaris]
Length=216
Score = 44.7 bits (104), Expect = 7e-10
Identities = 22/58 (38%), Positives = 34/58 (59%), Gaps = 0/58 (0%)
Query 38 EVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRIINAQGKVSTY 95
+++ LV FG +Y Q+A LAG PK AR VG +++ IP HR++ + G + Y
Sbjct 105 KLLELVKFGDTVSYQQLAALAGNPKAARAVGGAMRSNPVPILIPCHRVVCSSGAMGNY 162
>Q5SI16 DNA base-flipping protein [Thermus thermophilus (strain
ATCC 27634 / DSM 579 / HB8)]
Length=147
Score = 41.6 bits (96), Expect = 5e-09
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query 35 QILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRIINAQGKVST 94
++ E + LVP+G+ +YG + R GL R VG L+ +P HR+I+A G++
Sbjct 72 RLYERVRLVPYGRTVSYGALGRELGL--SPRAVGAALRACPFFLLVPAHRVIHADGRLGG 129
Query 95 YHLNQIGENIQLNKLRDEG 113
+ Q E ++L LR EG
Sbjct 130 F---QGQEGLKLWLLRFEG 145
>Q58924 Methylated-DNA--protein-cysteine methyltransferase [Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 /
JAL-1 / JCM 10045 / NBRC 100440)]
Length=167
Score = 36.2 bits (82), Expect = 5e-07
Identities = 20/56 (36%), Positives = 29/56 (52%), Gaps = 2/56 (4%)
Query 31 ELYSQILEVIALVPFGKVATYGQIARLAGLPKHARLVGYTLKNIDQASDIPWHRII 86
E ++L+++ + FGK TYG IA+ L R VG LK IP HR++
Sbjct 79 EFTKKVLDIVKDIEFGKTLTYGDIAK--KLNTSPRAVGMALKRNPLPLIIPCHRVV 132
Lambda K H a alpha
0.326 0.141 0.426 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 261063
Database: 32987665b40f473ed78ba6e50022e1d0.SwissProt.fasta
Posted date: Jun 3, 2024 7:43 AM
Number of letters in database: 3,267
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
