Comparative Genomics

ACIAD2881 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 49f2d7ac03e8f0590911073c9a190fec.SwissProt.fasta
           7 sequences; 826 total letters



Query= ACIAD2881

Length=122
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P51057 Succinate dehydrogenase hydrophobic membrane anchor subuni...  95.1    1e-30
P0AC45 Succinate dehydrogenase hydrophobic membrane anchor subuni...  91.3    3e-29
P0AC46 Succinate dehydrogenase hydrophobic membrane anchor subuni...  91.3    3e-29
P0AC44 Succinate dehydrogenase hydrophobic membrane anchor subuni...  91.3    3e-29
Q8X9A9 Succinate dehydrogenase hydrophobic membrane anchor subuni...  90.9    5e-29
Q1RHB6 Succinate dehydrogenase hydrophobic membrane anchor subuni...  44.3    7e-11
Q92J98 Succinate dehydrogenase hydrophobic membrane anchor subuni...  39.7    4e-09


>P51057 Succinate dehydrogenase hydrophobic membrane anchor subunit 
[Coxiella burnetii (strain RSA 493 / Nine Mile phase I)]
Length=115

 Score = 95.1 bits (235),  Expect = 1e-30
 Identities = 43/109 (39%), Positives = 63/109 (58%), Gaps = 7/109 (6%)

Query  11   GSRDWFIQRISAVVLAVYTVVIFGWILFHGGFSYEQWSGFMMTLPMKILSLLAILSLAAH  70
            G RDWF+QRI+A++  +Y V +  ++L H   SY QW      L MKI +L+ I S+  H
Sbjct  11   GYRDWFVQRITALLSGIYAVFVIVFLLVHHPISYPQWHALFSHLIMKIFTLIVIFSILWH  70

Query  71   AWIGMWQVFTDYVTTRQMGPSASGLRLVLTSAVIIAVFVFAIWGIQIFW  119
            AWIGMW +FTDYV  +        +RL L + V + +  + +W I+  W
Sbjct  71   AWIGMWTIFTDYVKNKP-------IRLALETLVCLLLVGYFVWAIEFLW  112


>P0AC45 Succinate dehydrogenase hydrophobic membrane anchor subunit 
[Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / 
UPEC)]
Length=115

 Score = 91.3 bits (225),  Expect = 3e-29
 Identities = 43/119 (36%), Positives = 69/119 (58%), Gaps = 7/119 (6%)

Query  1    MKSATGLTGSGSRDWFIQRISAVVLAVYTVVIFGWILFHGGFSYEQWSGFMMTLPMKILS  60
            + +A+ L  +G  D+ + R +A+VL +Y + + G+    G  +YE W GF  +   K+ +
Sbjct  2    VSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFT  61

Query  61   LLAILSLAAHAWIGMWQVFTDYVTTRQMGPSASGLRLVLTSAVIIAVFVFAIWGIQIFW  119
            LLA+ S+  HAWIGMWQV TDYV           LRL+L   +++A+ V+ I+G  + W
Sbjct  62   LLALFSILIHAWIGMWQVLTDYV-------KPLALRLMLQLVIVVALVVYVIYGFVVVW  113


>P0AC46 Succinate dehydrogenase hydrophobic membrane anchor subunit 
[Shigella flexneri]
Length=115

 Score = 91.3 bits (225),  Expect = 3e-29
 Identities = 43/119 (36%), Positives = 69/119 (58%), Gaps = 7/119 (6%)

Query  1    MKSATGLTGSGSRDWFIQRISAVVLAVYTVVIFGWILFHGGFSYEQWSGFMMTLPMKILS  60
            + +A+ L  +G  D+ + R +A+VL +Y + + G+    G  +YE W GF  +   K+ +
Sbjct  2    VSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFT  61

Query  61   LLAILSLAAHAWIGMWQVFTDYVTTRQMGPSASGLRLVLTSAVIIAVFVFAIWGIQIFW  119
            LLA+ S+  HAWIGMWQV TDYV           LRL+L   +++A+ V+ I+G  + W
Sbjct  62   LLALFSILIHAWIGMWQVLTDYV-------KPLALRLMLQLVIVVALVVYVIYGFVVVW  113


>P0AC44 Succinate dehydrogenase hydrophobic membrane anchor subunit 
[Escherichia coli (strain K12)]
Length=115

 Score = 91.3 bits (225),  Expect = 3e-29
 Identities = 43/119 (36%), Positives = 69/119 (58%), Gaps = 7/119 (6%)

Query  1    MKSATGLTGSGSRDWFIQRISAVVLAVYTVVIFGWILFHGGFSYEQWSGFMMTLPMKILS  60
            + +A+ L  +G  D+ + R +A+VL +Y + + G+    G  +YE W GF  +   K+ +
Sbjct  2    VSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFT  61

Query  61   LLAILSLAAHAWIGMWQVFTDYVTTRQMGPSASGLRLVLTSAVIIAVFVFAIWGIQIFW  119
            LLA+ S+  HAWIGMWQV TDYV           LRL+L   +++A+ V+ I+G  + W
Sbjct  62   LLALFSILIHAWIGMWQVLTDYV-------KPLALRLMLQLVIVVALVVYVIYGFVVVW  113


>Q8X9A9 Succinate dehydrogenase hydrophobic membrane anchor subunit 
[Escherichia coli O157:H7]
Length=115

 Score = 90.9 bits (224),  Expect = 5e-29
 Identities = 43/119 (36%), Positives = 69/119 (58%), Gaps = 7/119 (6%)

Query  1    MKSATGLTGSGSRDWFIQRISAVVLAVYTVVIFGWILFHGGFSYEQWSGFMMTLPMKILS  60
            + +A+ L  +G  D+ + R +A+VL +Y + + G+    G  +YE W GF  +   K+ +
Sbjct  2    VSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFCASAFTKVFT  61

Query  61   LLAILSLAAHAWIGMWQVFTDYVTTRQMGPSASGLRLVLTSAVIIAVFVFAIWGIQIFW  119
            LLA+ S+  HAWIGMWQV TDYV           LRL+L   +++A+ V+ I+G  + W
Sbjct  62   LLALFSILIHAWIGMWQVLTDYV-------KPLALRLMLQLVIVVALVVYVIYGFVVVW  113


>Q1RHB6 Succinate dehydrogenase hydrophobic membrane anchor subunit 
[Rickettsia bellii (strain RML369-C)]
Length=125

 Score = 44.3 bits (103),  Expect = 7e-11
 Identities = 34/121 (28%), Positives = 60/121 (50%), Gaps = 25/121 (21%)

Query  5    TGLTGSGSRDWFIQRISAVVLAVYTVVIFGWILF------HGGFSYEQWSGFMMTLPMKI  58
            TG   SGS  W +QRI+A++L + ++    W+L+      +   +   W    +  P+ +
Sbjct  15   TGSAKSGSHHWLLQRITAIILVLCSL----WLLYFTLANKNSDVNIIIWE---LKRPINL  67

Query  59   LSLL-AILSLAAHAWIGMWQVFTDYVTTRQMGPSASGLRLVLTSAVIIAVFVFAIWGIQI  117
            + LL A+++   HA +GM  V  DY++  +           L + +IIAV +F+I  I  
Sbjct  68   IPLLIAVITSLYHAMLGMQVVIEDYISCNK-----------LRNTLIIAVKLFSILTIVA  116

Query  118  F  118
            F
Sbjct  117  F  117


>Q92J98 Succinate dehydrogenase hydrophobic membrane anchor subunit 
[Rickettsia conorii (strain ATCC VR-613 / Malish 7)]
Length=126

 Score = 39.7 bits (91),  Expect = 4e-09
 Identities = 24/109 (22%), Positives = 55/109 (50%), Gaps = 4/109 (4%)

Query  5    TGLTGSGSRDWFIQRISAVVLAVYTVVIFGWILFHGGFSYEQWSGFMMTLPMKILSLLAI  64
            +G   SGS  W +QR++ ++LA+ +V +  + L +          + +  P  +++LL  
Sbjct  15   SGSAKSGSHHWLLQRVTGIILALCSVWLIYFTLTNKNNDINIIMLWELKKPFNVVALLIT  74

Query  65   LSLAA-HAWIGMWQVFTDYVTTRQMGPSASGLRLVLTSAVIIAVFVFAI  112
            + ++  HA +GM  V  DY++  ++    + L +++    I+ +  F +
Sbjct  75   VVISLYHAMLGMRVVIEDYISYHKL---RNTLIIIVQLFCIVTIVAFVV  120


 Score = 15.8 bits (29),  Expect = 1.1
 Identities = 6/18 (33%), Positives = 10/18 (56%), Gaps = 0/18 (0%)

Query  24   VLAVYTVVIFGWILFHGG  41
            +  + T+V F   LF+ G
Sbjct  109  LFCIVTIVAFVVALFYKG  126



Lambda      K        H        a         alpha
   0.335    0.141    0.476    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 63147


  Database: 49f2d7ac03e8f0590911073c9a190fec.SwissProt.fasta
    Posted date:  May 20, 2024  3:22 PM
  Number of letters in database: 826
  Number of sequences in database:  7



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40