BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 57a93bbec6f055753c792d8c9ce95b14.SwissProt.fasta
15 sequences; 1,057 total letters
Query= ACIAD2892
Length=88
Score E
Sequences producing significant alignments: (Bits) Value
P00208 Ferredoxin [Allochromatium vinosum (strain ATCC 17899 / DS... 117 3e-40
P52102 Ferredoxin YfhL [Escherichia coli (strain K12)] 106 4e-36
P44746 Uncharacterized ferredoxin-like protein HI_0527 [Haemophil... 104 4e-35
P00206 Ferredoxin-2 [Chlorobium limicola] 73.2 4e-23
P00205 Ferredoxin [Chlorobaculum thiosulfatiphilum] 72.4 8e-23
Q8KCZ7 Ferredoxin-2 [Chlorobaculum tepidum (strain ATCC 49652 / D... 72.0 1e-22
Q8KCZ6 Ferredoxin-1 [Chlorobaculum tepidum (strain ATCC 49652 / D... 70.1 7e-22
Q8KBP9 Ferredoxin-3 [Chlorobaculum tepidum (strain ATCC 49652 / D... 70.1 7e-22
P27394 Ferredoxin-like protein in nif region [Bradyrhizobium diaz... 65.5 6e-20
P00207 Ferredoxin-1 [Rhodopseudomonas palustris (strain ATCC BAA-... 63.5 3e-19
D5ARY6 Ferredoxin-1 [Rhodobacter capsulatus (strain ATCC BAA-309 ... 57.0 1e-16
P0CY90 Ferredoxin-1 [Rhodobacter capsulatus] 57.0 1e-16
P00197 Ferredoxin [Clostridium sp. (strain M-E)] 48.9 1e-13
P00198 4Fe-4S ferredoxin FdxA [Gottschalkia acidurici (strain ATC... 46.2 2e-12
P12415 Ferredoxin-like protein in nif region [Nostoc sp. (strain ... 47.0 3e-12
>P00208 Ferredoxin [Allochromatium vinosum (strain ATCC 17899
/ DSM 180 / NBRC 103801 / NCIMB 10441 / D)]
Length=83
Score = 117 bits (292), Expect = 3e-40
Identities = 49/79 (62%), Positives = 60/79 (76%), Gaps = 0/79 (0%)
Query 1 VSLYITEECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVDCIP 60
++L IT+ECINCDVCEP CPN AI G+ Y I P LCTECVGH++ QC CPVDCI
Sbjct 1 MALMITDECINCDVCEPECPNGAISQGDETYVIEPSLCTECVGHYETSQCVEVCPVDCII 60
Query 61 KDPDHEETQDQLMQKYQKL 79
KDP HEET+D+L KY+++
Sbjct 61 KDPSHEETEDELRAKYERI 79
>P52102 Ferredoxin YfhL [Escherichia coli (strain K12)]
Length=86
Score = 106 bits (265), Expect = 4e-36
Identities = 46/77 (60%), Positives = 60/77 (78%), Gaps = 1/77 (1%)
Query 1 VSLYITEECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPV-DCI 59
++L IT++CINCD+CEP CPNEAI MG+ IYEI+ D CTECVGH++ P CQ CP+ + I
Sbjct 1 MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGHYETPTCQKVCPIPNTI 60
Query 60 PKDPDHEETQDQLMQKY 76
KDP H ET++QL K+
Sbjct 61 VKDPAHVETEEQLWDKF 77
>P44746 Uncharacterized ferredoxin-like protein HI_0527 [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=86
Score = 104 bits (259), Expect = 4e-35
Identities = 43/77 (56%), Positives = 59/77 (77%), Gaps = 1/77 (1%)
Query 1 VSLYITEECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPV-DCI 59
++L IT +C NCD+C P CPNEAI +G+ IY I P LCTECVGH+D P CQ CP+ +CI
Sbjct 1 MALLITSKCTNCDMCLPECPNEAISIGDEIYVIDPILCTECVGHYDTPTCQKVCPITNCI 60
Query 60 PKDPDHEETQDQLMQKY 76
DP+H+ET++QL +++
Sbjct 61 KPDPEHQETEEQLWERF 77
>P00206 Ferredoxin-2 [Chlorobium limicola]
Length=61
Score = 73.2 bits (178), Expect = 4e-23
Identities = 30/57 (53%), Positives = 37/57 (65%), Gaps = 0/57 (0%)
Query 5 ITEECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVDCIPK 61
ITEEC C CEP CP AI G+ IY + +CT+C G++D+P C CPVDCI K
Sbjct 4 ITEECTYCAACEPECPVNAISAGDEIYIVDESVCTDCEGYYDEPACVAVCPVDCIIK 60
>P00205 Ferredoxin [Chlorobaculum thiosulfatiphilum]
Length=61
Score = 72.4 bits (176), Expect = 8e-23
Identities = 32/58 (55%), Positives = 34/58 (59%), Gaps = 0/58 (0%)
Query 2 SLYITEECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVDCI 59
+LYITEEC C CEP CP AI G IY I CTECVG D P C CP +CI
Sbjct 1 ALYITEECTYCGACEPECPTNAISAGSEIYVIDAAGCTECVGFADAPACAAVCPAECI 58
>Q8KCZ7 Ferredoxin-2 [Chlorobaculum tepidum (strain ATCC 49652
/ DSM 12025 / NBRC 103806 / TLS)]
Length=62
Score = 72.0 bits (175), Expect = 1e-22
Identities = 29/57 (51%), Positives = 37/57 (65%), Gaps = 0/57 (0%)
Query 5 ITEECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVDCIPK 61
IT+EC C CEP CP AI G+ IY I ++C +C+G+ D+P C CPVDCI K
Sbjct 5 ITDECTYCAACEPECPVSAISAGDSIYVIDENVCVDCIGYHDEPACVAVCPVDCIIK 61
>Q8KCZ6 Ferredoxin-1 [Chlorobaculum tepidum (strain ATCC 49652
/ DSM 12025 / NBRC 103806 / TLS)]
Length=62
Score = 70.1 bits (170), Expect = 7e-22
Identities = 30/59 (51%), Positives = 33/59 (56%), Gaps = 0/59 (0%)
Query 1 VSLYITEECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVDCI 59
++LYITEEC C CEP CP AI G IY I C EC G D P C CP +CI
Sbjct 1 MALYITEECTYCGACEPECPTNAISAGSEIYVIDAASCNECAGFADSPACVAVCPAECI 59
>Q8KBP9 Ferredoxin-3 [Chlorobaculum tepidum (strain ATCC 49652
/ DSM 12025 / NBRC 103806 / TLS)]
Length=62
Score = 70.1 bits (170), Expect = 7e-22
Identities = 32/61 (52%), Positives = 35/61 (57%), Gaps = 0/61 (0%)
Query 1 VSLYITEECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVDCIP 60
+SL ITEEC C CEP CP AI G IY I CTEC G+ D P C CP +CI
Sbjct 1 MSLKITEECTFCAACEPECPVNAISAGSDIYVIDESACTECEGYADSPACVAVCPAECIV 60
Query 61 K 61
K
Sbjct 61 K 61
>P27394 Ferredoxin-like protein in nif region [Bradyrhizobium
diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 /
NBRC 14792 / USDA 110)]
Length=74
Score = 65.5 bits (158), Expect = 6e-20
Identities = 27/53 (51%), Positives = 33/53 (62%), Gaps = 0/53 (0%)
Query 5 ITEECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVD 57
I +C +C CEP+CPN AI + I C+ECVGHFD+PQC CPVD
Sbjct 6 IASQCTSCSACEPLCPNVAISEKGGNFVIEAAKCSECVGHFDEPQCAAACPVD 58
>P00207 Ferredoxin-1 [Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009)]
Length=63
Score = 63.5 bits (153), Expect = 3e-19
Identities = 29/58 (50%), Positives = 33/58 (57%), Gaps = 2/58 (3%)
Query 5 ITEECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVD--CIP 60
+T +C C CE CPN AI M Y I CTEC G FD+PQC CPVD C+P
Sbjct 5 VTSQCTVCGACEFECPNAAISMKRGTYVIDATKCTECEGQFDKPQCVSVCPVDNTCVP 62
>D5ARY6 Ferredoxin-1 [Rhodobacter capsulatus (strain ATCC BAA-309
/ NBRC 16581 / SB1003)]
Length=65
Score = 57.0 bits (136), Expect = 1e-16
Identities = 27/54 (50%), Positives = 31/54 (57%), Gaps = 1/54 (2%)
Query 7 EECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVD-CI 59
E C +C CEPVCP AI + +Y I+ D CTEC G D PQC C D CI
Sbjct 8 ELCTSCGDCEPVCPTNAIAPKKGVYVINADTCTECEGEHDLPQCVNACMTDNCI 61
Score = 23.5 bits (49), Expect = 0.001
Identities = 10/28 (36%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query 32 EIHPDLCTECVGHFDQPQCQLFCPVDCI 59
+I P+LCT C C+ CP + I
Sbjct 4 KIDPELCTSC------GDCEPVCPTNAI 25
>P0CY90 Ferredoxin-1 [Rhodobacter capsulatus]
Length=65
Score = 57.0 bits (136), Expect = 1e-16
Identities = 27/54 (50%), Positives = 31/54 (57%), Gaps = 1/54 (2%)
Query 7 EECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVD-CI 59
E C +C CEPVCP AI + +Y I+ D CTEC G D PQC C D CI
Sbjct 8 ELCTSCGDCEPVCPTNAIAPKKGVYVINADTCTECEGEHDLPQCVNACMTDNCI 61
Score = 23.5 bits (49), Expect = 0.001
Identities = 10/28 (36%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query 32 EIHPDLCTECVGHFDQPQCQLFCPVDCI 59
+I P+LCT C C+ CP + I
Sbjct 4 KIDPELCTSC------GDCEPVCPTNAI 25
>P00197 Ferredoxin [Clostridium sp. (strain M-E)]
Length=55
Score = 48.9 bits (115), Expect = 1e-13
Identities = 24/55 (44%), Positives = 28/55 (51%), Gaps = 6/55 (11%)
Query 5 ITEECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVDCI 59
IT+ CINC CEP CP EAI + + I D C +C C CPVD I
Sbjct 4 ITDGCINCGACEPECPVEAISESDAVRVIDADKCIDC------GACANTCPVDAI 52
Score = 26.6 bits (57), Expect = 6e-05
Identities = 9/21 (43%), Positives = 13/21 (62%), Gaps = 0/21 (0%)
Query 7 EECINCDVCEPVCPNEAIYMG 27
++CI+C C CP +AI G
Sbjct 35 DKCIDCGACANTCPVDAIVEG 55
>P00198 4Fe-4S ferredoxin FdxA [Gottschalkia acidurici (strain
ATCC 7906 / DSM 604 / BCRC 14475 / CIP 104303 / KCTC 5404 /
NCIMB 10678 / 9a)]
Length=56
Score = 46.2 bits (108), Expect = 2e-12
Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query 5 ITEECINCDVCEPVCPNEAIYMGELIYEIHPDLCTECVGHFDQPQCQLFCPVD 57
I E CI+C CEP CP AI G+ Y I D C +C C CPVD
Sbjct 5 INEACISCGACEPECPVNAISSGDDRYVIDADTCIDC------GACAGVCPVD 51
Score = 24.6 bits (52), Expect = 3e-04
Identities = 8/17 (47%), Positives = 11/17 (65%), Gaps = 0/17 (0%)
Query 7 EECINCDVCEPVCPNEA 23
+ CI+C C VCP +A
Sbjct 36 DTCIDCGACAGVCPVDA 52
>P12415 Ferredoxin-like protein in nif region [Nostoc sp. (strain
PCC 7120 / SAG 25.82 / UTEX 2576)]
Length=116
Score = 47.0 bits (110), Expect = 3e-12
Identities = 26/67 (39%), Positives = 36/67 (54%), Gaps = 4/67 (6%)
Query 5 ITEECINCDVCEPVCPNEAIYMGEL-IYEIHPDLCTECVGH-FDQPQCQLFCPV--DCIP 60
IT +CI+C +C VCP AI + E + I +LCT CV + PQC+ CP C+
Sbjct 5 ITSQCISCKLCSSVCPTGAIKIAENGQHWIDSELCTNCVDTVYTVPQCKAGCPTCDGCVK 64
Query 61 KDPDHEE 67
D+ E
Sbjct 65 VPSDYWE 71
Lambda K H a alpha
0.327 0.143 0.485 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 46280
Database: 57a93bbec6f055753c792d8c9ce95b14.SwissProt.fasta
Posted date: Jun 3, 2024 5:23 PM
Number of letters in database: 1,057
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
