BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 306caa736e4076f8c129ae29cf54bac2.SwissProt.fasta
3 sequences; 948 total letters
Query= ACIAD2956
Length=302
Score E
Sequences producing significant alignments: (Bits) Value
Q58437 Uncharacterized transporter MJ1031 [Methanocaldococcus jan... 62.8 2e-15
P45869 Uncharacterized transporter YwkB [Bacillus subtilis (strai... 52.8 6e-12
O34524 Uncharacterized sodium-dependent transporter YocS [Bacillu... 21.6 0.063
>Q58437 Uncharacterized transporter MJ1031 [Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045
/ NBRC 100440)]
Length=308
Score = 62.8 bits (151), Expect = 2e-15
Identities = 64/303 (21%), Positives = 138/303 (46%), Gaps = 23/303 (8%)
Query 11 LIALIATGYLFKTYQFFSAEFWAGAEKLNYYVLFPALLFHTLV-----TAKIDFQNLKYV 65
++ L+ GY K + E + Y+ P+ +F T+ + ++F L V
Sbjct 10 VLILVLVGYFSKIFGILKEEHAKILNNIVIYIAMPSTIFLTISKNVSSSQILEFLKLPVV 69
Query 66 IFVMFAVIAVTTIVLYGIKYLKDIRPARFGVHVQSIVRFNT-YIGLALVAALYHKEGMA- 123
IF+ + + +L K++ ++ + G + + NT ++G + ++ +EG+A
Sbjct 70 IFLCCLFVGILAYLLG--KHIFKLKDEKLGGLILVSMLGNTGFLGYPVALGMFGEEGLAR 127
Query 124 --------ILAILLAVSIPVVNVISVLSLTSSENMALKPVLLALLKNPLIVSCLFGGVFN 175
+ A +L + + + ++MA P L+ + + ++V FG F
Sbjct 128 AIFCDLGGVFATMLLGTYVGIRFGKGRDKSILKDMAKFPPLITGILSIILV--FFG--FK 183
Query 176 ALQIPLWDGILNLLKLFSSSSLPLGLLCVGAALQFMEMKKDVPALLLDTAARLLVMPALA 235
IP + IL L SS+++PL ++ +G +L +K V ++ + R +V PA A
Sbjct 184 LNYIPSF--ILKSLNYLSSATVPLIMMSLGLSLSPKALKFGVFWGIIASIFRFIVSPATA 241
Query 236 YVVCMWMGLSALETQIMVVFFALPTASAAYILTKVLRGDSQLMAAVISLQTLCAAVTLPL 295
+ + + + LE +++V ++P+A +L + D +L+A+ I + T + + + L
Sbjct 242 FTLSELINIKGLEKNVLLVESSMPSAMMTLVLGTLYELDIKLIASSIFITTTFSLLVIAL 301
Query 296 VIW 298
W
Sbjct 302 WGW 304
>P45869 Uncharacterized transporter YwkB [Bacillus subtilis (strain
168)]
Length=319
Score = 52.8 bits (125), Expect = 6e-12
Identities = 64/321 (20%), Positives = 146/321 (45%), Gaps = 38/321 (12%)
Query 4 IFLALFPLIALIATGYLFKTYQFFSAEFWAGAEKLNYYVLFPA-LLFHTLVTAKIDF-QN 61
I + L P+ +I G+ + + A+ G L PA + L T++ +F
Sbjct 6 ILILLAPIFFVIVLGWFAGHFGSYDAKSAKGVSTLVTKYALPAHFIAGILTTSRSEFLSQ 65
Query 62 LKYVIFVMFAVIAVTTIVLYGIKYLKDIRPARFGVHVQSIVRFNT------YIGLALVAA 115
+ +I ++ ++ I+L +++ ++ + S+ N+ ++G+ ++ +
Sbjct 66 VPLMISLIIGIVGFYIIILLVCRFI-----FKYDLTNSSVFSLNSAQPTFAFMGIPVLGS 120
Query 116 LYHKEGMAILAILLAVSI-----PVVNVISVLSLTSSEN---------MALKPVLLALLK 161
L+ +AI + + + P+ +I+ + +S +N M K +L L +
Sbjct 121 LFGANEVAIPIAVTGIVVNAILDPLAIIIATVGESSKKNEESGDSFWKMTGKSILHGLCE 180
Query 162 NPL----IVSCLFGGVFNALQIPLWDGILNLLKLFSSSSLPLGLLCVGAALQFMEMKKDV 217
PL ++S + VFN L + +L S++ + L VG + ++K +
Sbjct 181 -PLAAAPLISMILVLVFNFTLPELG---VKMLDQLGSTTSGVALFAVGVTVGIRKIKLSM 236
Query 218 PALLLDTAARLLVMPALAYVVCMWMGLSALETQIMVVFFALP-TASAAYILTKVLRGDSQ 276
PA+ + ++ V PAL +++ + +GL A +T ++ A P +A AA I T+ + + +
Sbjct 237 PAIGI-ALLKVAVQPALMFLIALAIGLPADQTTKAILLVAFPGSAVAAMIATRFEKQEEE 295
Query 277 LMAAVISLQTLCAAVTLPLVI 297
A + + + + ++LP++I
Sbjct 296 TATAFV-VSAILSLISLPIII 315
>O34524 Uncharacterized sodium-dependent transporter YocS [Bacillus
subtilis (strain 168)]
Length=321
Score = 21.6 bits (44), Expect = 0.063
Identities = 20/97 (21%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query 73 IAVTTI------------VLYGIKYLKDIRPARFGVHVQSIVRFNTYIGLALVAALYHKE 120
+AVTTI ++ K + P + + V F GL + +
Sbjct 129 VAVTTISTLLAPVVTPLLIMLFAKEWLPVSPGSLFISILQAVLFPIIAGLIVKMFFRKQV 188
Query 121 GMAILAILLAVSIPVVNVISVLSLTSSENMALKPVLL 157
A+ A+ L I +V ++S + + EN+ +L+
Sbjct 189 AKAVHALPLVSVIGIVAIVSAVVSGNRENLLQSGLLI 225
Score = 21.2 bits (43), Expect = 0.083
Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 28/135 (21%)
Query 65 VIFVMFAVIAVTTIVLYGIKYLKDIRPARFGVHVQSIVRFNTYIGLALVAALYHKEGMAI 124
VI + A + +V +G+ FG+H+ + + +G+ LV +
Sbjct 70 VIIGVIAQYTIMPLVAFGL---------AFGLHLPAEIA----VGVILVGCCPGGTASNV 116
Query 125 LAIL----LAVSIPVVNVISVLSLTSSENMALKPVLLALLKN---PLIVSCLFGGVFNAL 177
+ L A+S+ V + ++L+ + P+L+ L P+ LF + A+
Sbjct 117 MTFLAKGNTALSVAVTTISTLLA------PVVTPLLIMLFAKEWLPVSPGSLFISILQAV 170
Query 178 QIPLWDGILNLLKLF 192
P+ G+ ++K+F
Sbjct 171 LFPIIAGL--IVKMF 183
Score = 15.0 bits (27), Expect = 7.4
Identities = 21/102 (21%), Positives = 36/102 (35%), Gaps = 24/102 (24%)
Query 98 VQSIVRFNTYIGLALVAALYHKEGMAILAILLAVSIPVVNVISVLSLTSSENMALKPVLL 157
+ +V F GL L A + + ++L P +V++ + N AL +
Sbjct 80 IMPLVAFGLAFGLHLPAEI-------AVGVILVGCCPGGTASNVMTFLAKGNTALSVAVT 132
Query 158 ALLKNPLIVSCLFGGVFNALQIPLWDGILNLLKLFSSSSLPL 199
+S L V L L+ LF+ LP+
Sbjct 133 T-------ISTLLAPVVTPL----------LIMLFAKEWLPV 157
Lambda K H a alpha
0.333 0.143 0.430 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 226728
Database: 306caa736e4076f8c129ae29cf54bac2.SwissProt.fasta
Posted date: Jun 3, 2024 8:23 PM
Number of letters in database: 948
Number of sequences in database: 3
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
