BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: fa72197f998d526e27319e0b67b32765.SwissProt.fasta
           2 sequences; 893 total letters



Query= ACIAD2984

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q51485 Porin B [Pseudomonas aeruginosa (strain ATCC 15692 / DSM 2...  414     1e-146
Q43923 Putative porin QuiX [Acinetobacter baylyi (strain ATCC 333...  312     3e-107


>Q51485 Porin B [Pseudomonas aeruginosa (strain ATCC 15692 / DSM 
22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 
/ PAO1)]
Length=454

 Score = 414 bits (1063),  Expect = 1e-146
 Identities = 211/443 (48%), Positives = 272/443 (61%), Gaps = 37/443 (8%)

Query  9    ISCISMLSLSIWTQQVSAASAFDPSSEWMLGDWNGERTALKQKGYDFSIGYTGEMATVLD  68
            + C+  L          AA AF P+S+WMLGDW G+RT L +KGYDF + Y GE A  LD
Sbjct  14   VGCLFALGALGLGSAAHAAEAFSPNSKWMLGDWGGKRTELLEKGYDFKLEYVGEAAANLD  73

Query  69   SKDTSRHGTEYAGQVALGTHFDLNKILGWQDTEAQITLTHRDGHDIKNKAAA--LEGQLS  126
                      Y  Q ALG H DL KILGW+ TE Q T+T R+G ++ N        G +S
Sbjct  74   GGYDDDKTGRYTDQFALGVHMDLEKILGWKATEFQFTVTERNGKNLSNDRIGDPRAGHIS  133

Query  127  STQEVYGRGQTTRLTDLWIKKKFFDQALDIKVGRFGESEDFNPAACDFQNLALCGDQMGN  186
            S QEV+GRGQT RLT LW+K+++FD ALD+K GRFGE EDFN   CDFQNLA CG Q+GN
Sbjct  134  SVQEVWGRGQTWRLTQLWLKQQYFDGALDVKFGRFGEGEDFNSFPCDFQNLAFCGSQVGN  193

Query  187  WNAGDQIHNWPVSQWAARVKYNVTPEVFAQVGVYEYNPENLKRSKGFNLSTDGSKGAVIP  246
            W AG   +NWPVSQWA RVKYN  P+ + QVG YE NP NL+   GF +S  G+KGA++P
Sbjct  194  W-AGSIWYNWPVSQWALRVKYNFAPDWYVQVGAYEQNPSNLETGNGFKMSGSGTKGALLP  252

Query  247  VEVVWQPKSGLINGLAGEYRAGYYYSTADANEI--------------NSTNKDHGQGGWL  292
            VE++WQPK G    L GEYR GYYYSTA A+++              +  ++    G W+
Sbjct  253  VELIWQPKVG-AEQLPGEYRLGYYYSTAKADDVYDDVDGQPQGLTGNDFKSRGSKHGWWV  311

Query  293  SFIQQLTAVNGDTSRGLKVVGQATFFDEATSRVKNTQSLAFAYKGLVDTRPKDELAIGFS  352
               QQ+T+ NGD SRGL +    T  D+AT+ V N Q L   YKG  D RPKD++ +G +
Sbjct  312  VAQQQVTSHNGDASRGLSLFANLTVHDKATNVVDNYQQLGVVYKGPFDARPKDDIGLGIA  371

Query  353  RINLNDDAYLGKDV-------------------DSEYNSEIYYGIEATNWLTVRPNVQYV  393
            RI++NDD    + +                   D+EYN+E+YYG+  T+WLTVRPN+QY+
Sbjct  372  RIHVNDDVKKRQRLVNQVNGIDDYDNPLYQPLQDTEYNAELYYGVHVTDWLTVRPNLQYI  431

Query  394  RHVGALKDGNNAWVGGIKFQTVF  416
            +  G + + +NA V GIK QTVF
Sbjct  432  KQPGGVDEVDNALVAGIKIQTVF  454


>Q43923 Putative porin QuiX [Acinetobacter baylyi (strain ATCC 
33305 / BD413 / ADP1)]
Length=439

 Score = 312 bits (800),  Expect = 3e-107
 Identities = 170/434 (39%), Positives = 243/434 (56%), Gaps = 30/434 (7%)

Query  12   ISMLSLSIWTQQVSAASAF-DPSSEWMLGDWNGERTALKQKGYDFSIGYTGEMATVLDSK  70
            + ++S ++   Q++ A+ F     +W+LGDW GER  L+++GY F+     + AT LD  
Sbjct  7    LGLVSAAVLGSQMTLANDFWSQDRQWLLGDWGGERQQLEKQGYKFTASIMSQAATNLDGG  66

Query  71   DTSRHGTEYAGQVALGTHFDLNKILGWQDTEAQITLTHRDGHD--IKNKAAALEGQLSST  128
                +  E AGQ+ LG +FDL+KI GW+DT A I +T RDG+   ++         L +T
Sbjct  67   YNDSNTLENAGQLTLGANFDLSKIAGWEDTTAAIMITKRDGNSLTLERIKDPRSTTLGNT  126

Query  129  QEVYGRGQTTRLTDLWIKKKFFDQALDIKVGRFGESEDFNPAACDFQNLALCGDQMGNWN  188
            QE+YGRG+  RLT  W+KK F D  +  K+GR G S+DFN + C+FQNL LCG Q+G  +
Sbjct  127  QEIYGRGKIWRLTQAWVKKGFNDNTVQFKIGRMGMSDDFNSSQCEFQNLLLCGGQLGK-S  185

Query  189  AGDQIHNWPVSQWAARVKYNVTPEVFAQVGVYEYNPENLK---RSKGFNLSTDGSKGAVI  245
             G   +NWPV  W   VKY   PE    +GVYE NP+N+K    S GFNL  +  KGA I
Sbjct  186  IGSIWYNWPVGLWGTNVKYQFAPEWTLGLGVYEVNPDNVKTQSNSDGFNLDMNNVKGATI  245

Query  246  PVEVVWQPKSGLINGLAGEYRAGYYYSTADANEINSTNKDHG--QGGWLSFIQQLTAVNG  303
            PVE+ W+PK  + NGL GEY+ G  YSTADAN++ + +K H      W++  QQLT  N 
Sbjct  246  PVELAWKPKLAMFNGLPGEYKVGALYSTADANDVGTVSKVHDSKHSFWINTQQQLTQHND  305

Query  304  DTSRGLKVVGQATFFDEATSRVKNTQSLAFAYKGLVDTRPKDELAIGFSRINLNDDA---  360
            +  RGL V       D+AT+ V++TQ LA  YKG  D+RP D +  G +   +N      
Sbjct  306  NAKRGLFVSFNGVVNDKATTMVESTQQLALWYKGPFDSRPNDSIGFGLANYVVNKRVRDR  365

Query  361  ----------YLGKDVDSEY--------NSEIYYGIEATNWLTVRPNVQYVRHVGALKDG  402
                      Y   D+ S Y        N E+ Y  + +  + +RPN+QY+     +K+ 
Sbjct  366  QIATNESRGYYEYDDLASNYVPIQHDELNVELNYTYQWSPAVMLRPNIQYIHQPAGVKEV  425

Query  403  NNAWVGGIKFQTVF  416
            ++AWV G+  +  F
Sbjct  426  DDAWVAGLSMRLNF  439



Lambda      K        H        a         alpha
   0.317    0.133    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 311220


  Database: fa72197f998d526e27319e0b67b32765.SwissProt.fasta
    Posted date:  May 31, 2024  10:35 AM
  Number of letters in database: 893
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40