BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 0fec12521e41819119f90a6c2173f9ad.SwissProt.fasta
18 sequences; 7,958 total letters
Query= ACIAD3005
Length=445
Score E
Sequences producing significant alignments: (Bits) Value
P25519 GTPase HflX [Escherichia coli (strain K12)] 433 2e-153
Q0I442 GTPase HflX [Histophilus somni (strain 129Pt)] 390 5e-136
Q8RAS5 GTPase HflX [Caldanaerobacter subterraneus subsp. tengcong... 288 2e-96
A0L4B2 GTPase HflX [Magnetococcus marinus (strain ATCC BAA-1437 /... 282 3e-94
D9R4W7 GTPase HflX [Lacrimispora saccharolytica (strain ATCC 3504... 276 7e-92
D3FTV4 GTPase HflX [Alkalihalophilus pseudofirmus (strain ATCC BA... 269 2e-89
C1F407 GTPase HflX [Acidobacterium capsulatum (strain ATCC 51196 ... 266 4e-88
P94478 GTPase HflX [Bacillus subtilis (strain 168)] 260 9e-86
Q3AFV0 GTPase HflX [Carboxydothermus hydrogenoformans (strain ATC... 252 1e-82
A6H294 GTPase HflX [Flavobacterium psychrophilum (strain ATCC 495... 249 1e-81
Q9Z873 GTPase HflX [Chlamydia pneumoniae] 224 3e-71
O43824 Putative GTP-binding protein 6 [Homo sapiens] 154 6e-45
Q980M3 GTPase HflX [Saccharolobus solfataricus (strain ATCC 35092... 121 5e-34
P25522 tRNA modification GTPase MnmE [Escherichia coli (strain K12)] 64.3 3e-14
Q9H4K7 Mitochondrial ribosome-associated GTPase 2 [Homo sapiens] 57.0 6e-12
Q8L7L0 GTP-binding protein OBGC, chloroplastic [Arabidopsis thali... 57.4 6e-12
B8GYI7 GTPase Obg/CgtA [Caulobacter vibrioides (strain NA1000 / C... 55.8 1e-11
Q9WYA4 tRNA modification GTPase MnmE [Thermotoga maritima (strain... 55.8 1e-11
>P25519 GTPase HflX [Escherichia coli (strain K12)]
Length=426
Score = 433 bits (1114), Expect = 2e-153
Identities = 237/422 (56%), Positives = 304/422 (72%), Gaps = 3/422 (1%)
Query 7 DQGKERVILVSVSVNILDDLDAEEFALLASSAGAERLEHIYAQRVKPDAKLFIGSGKAEE 66
D G++ V++ D D +EF L SSAG E L+ I R P K F+G GKA E
Sbjct 6 DAGEQAVLVHIYFTQDKDMEDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVE 65
Query 67 IAERVEALDASLVIFDHALSPAQERNLEKIMKCRVIDRTGLILDIFAQRARTHEGKLQVE 126
IAE V+A AS+V+FDHALSPAQERNLE++ +CRVIDRTGLILDIFAQRARTHEGKLQVE
Sbjct 66 IAEAVKATGASVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVE 125
Query 127 LAQLKHLSTRLVRGWSGGFEQQKGGIGLRGPGETQLETDRRLIRIRMIQLKDKLDKVQQT 186
LAQL+HL+TRLVRGW+ E+QKGGIGLRGPGETQLETDRRL+R R++Q++ +L++V++
Sbjct 126 LAQLRHLATRLVRGWTH-LERQKGGIGLRGPGETQLETDRRLLRNRIVQIQSRLERVEKQ 184
Query 187 RLQGRAARQKAAIPTVSLVGYTNAGKSTLFNHLANSDVYAADQLFATLDPTLRRLDWDGI 246
R QGR +R KA +PTVSLVGYTNAGKSTLFN + + VYAADQLFATLDPTLRR+D +
Sbjct 185 REQGRQSRIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV 244
Query 247 GTVVLADTVGFVRNLQHDLIESFKATLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLKE 306
G VLADTVGF+R+L HDL+ +FKATL+ET +ATLLLH+ID++ + E IEAV VL+E
Sbjct 245 GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVIDAADVRVQENIEAVNTVLEE 304
Query 307 IGA-DAPVLRVYNKIDVSGD-EAKIIYARPHEPERVYVSAHSGAGIDLLKKAVQECLMGQ 364
I A + P L V NKID+ D E +I ++P RV++SA +GAGI L +A+ E L G+
Sbjct 305 IDAHEIPTLLVMNKIDMLEDFEPRIDRDEENKPNRVWLSAQTGAGIPQLFQALTERLSGE 364
Query 365 RQAFDLILKPIHGKLRTQLYNLNVIDSEHFDDQGQLHLHVVMAPQKLEQLIRQAHLSLDE 424
L L P G+LR++ Y L I+ E ++ G + L V M +L +Q +D
Sbjct 365 VAQHTLRLPPQEGRLRSRFYQLQAIEKEWMEEDGSVSLQVRMPIVDWRRLCKQEPALIDY 424
Query 425 IL 426
++
Sbjct 425 LI 426
>Q0I442 GTPase HflX [Histophilus somni (strain 129Pt)]
Length=458
Score = 390 bits (1002), Expect = 5e-136
Identities = 210/380 (55%), Positives = 272/380 (72%), Gaps = 3/380 (1%)
Query 27 DAEEFALLASSAGAERLEHIYAQRVKPDAKLFIGSGKAEEIAERVEALDASLVIFDHALS 86
D +EF LL SA + L I R P AK F+G GKAEEIA+ VE L+A +V+ +H+L+
Sbjct 51 DLQEFQLLVKSANVDILSIITTSRSTPQAKYFVGQGKAEEIAQAVEQLNADIVLVNHSLT 110
Query 87 PAQERNLEKIMKCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKHLSTRLVRGWSGGFE 146
PAQ RNLE I +CRV+DRTGLILDIFAQRAR+HEGKLQVELAQL+HL+TRLVR +G +
Sbjct 111 PAQARNLESICQCRVVDRTGLILDIFAQRARSHEGKLQVELAQLRHLATRLVRRKTG-LD 169
Query 147 QQKGGIGLRGPGETQLETDRRLIRIRMIQLKDKLDKVQQTRLQGRAARQKAAIPTVSLVG 206
QQKG +GLRGPGETQLETDRRLI++R+ QL+++L+KV + R Q R R+KA IPT+SLVG
Sbjct 170 QQKGAVGLRGPGETQLETDRRLIKVRITQLQNRLEKVAKQRNQNRQTRRKADIPTISLVG 229
Query 207 YTNAGKSTLFNHLANSDVYAADQLFATLDPTLRRLDWDGIGTVVLADTVGFVRNLQHDLI 266
YTNAGKSTLFN L ++VY ADQLFATLDPTL+RL +G VLADTVGF+R L HDL+
Sbjct 230 YTNAGKSTLFNVLTQANVYVADQLFATLDPTLKRLPIQDVGNCVLADTVGFIRELPHDLV 289
Query 267 ESFKATLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLKEIGAD-APVLRVYNKID-VSG 324
+FK+TL+ET EA+LLLH+ID + LE + V VL EI A+ L VYNKID V
Sbjct 290 SAFKSTLQETTEASLLLHVIDVADSRKLENMLTVNEVLSEIKANQVTTLLVYNKIDQVEN 349
Query 325 DEAKIIYARPHEPERVYVSAHSGAGIDLLKKAVQECLMGQRQAFDLILKPIHGKLRTQLY 384
+ I + ++P VY+SA G+DLL +A+++ L + ++ L +GK+R Y
Sbjct 350 IQPHIEFDEENQPIAVYLSAQLNQGLDLLVEAIRQKLSHEILHLEINLAAQYGKIRHCFY 409
Query 385 NLNVIDSEHFDDQGQLHLHV 404
LN + E ++QG+ L +
Sbjct 410 QLNCVRQEKINEQGEFLLDI 429
>Q8RAS5 GTPase HflX [Caldanaerobacter subterraneus subsp. tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)]
Length=428
Score = 288 bits (736), Expect = 2e-96
Identities = 176/400 (44%), Positives = 246/400 (62%), Gaps = 12/400 (3%)
Query 1 VESLDQDQGKERVILVSVSVNILDDLDAEEFALLASSAGAERLEHIYAQRVKPDAKLFIG 60
+E L +D KER ILV++ + D+ E LA +AGAE + + ++ + +IG
Sbjct 18 MEELARD--KERAILVAIISSPEDEETLNELKELAVTAGAEVIGILTQKKKGINKAHYIG 75
Query 61 SGKAEEIAERVEALDASLVIFDHALSPAQERNLEKIMKCRVIDRTGLILDIFAQRARTHE 120
GK EE+ VE A LVI + L+ Q +NLE + +++DRT LILDIFA+RAR+ E
Sbjct 76 KGKLEELKMFVENQQADLVIVNDELTGTQIKNLEDALGVKIVDRTNLILDIFAKRARSKE 135
Query 121 GKLQVELAQLKHLSTRLVRGWSGGFEQQKGGIGLRGPGETQLETDRRLIRIRMIQLKDKL 180
G LQVELAQLK+ RLV G G + GGIG RGPGET+LE DRR IR R+ +++KL
Sbjct 136 GMLQVELAQLKYRLPRLV-GLGGQLSRLGGGIGTRGPGETKLEVDRRHIRNRIKAIEEKL 194
Query 181 DKVQQTRLQGRAARQKAAIPTVSLVGYTNAGKSTLFNHLANSDVYAADQLFATLDPTLRR 240
+++++ R R R+K IP V++VGYTNAGKSTL N L +D Y D+LFATLDPT R+
Sbjct 195 EELEKHRNLQRQRRKKNQIPVVAIVGYTNAGKSTLLNALTGADAYVEDKLFATLDPTARK 254
Query 241 LDWDGIGTVVLADTVGFVRNLQHDLIESFKATLEETLEATLLLHIIDSSSPDMLEQIEAV 300
L V+L DTVGF+R L HDL+E+FK+TLEE A LLLH+ID +SPDM E+I+ V
Sbjct 255 LVLPSGREVILTDTVGFIRKLPHDLVEAFKSTLEEVKYADLLLHVIDVTSPDMDEKIKVV 314
Query 301 EGVLKEIGA-DAPVLRVYNKIDVSGDEAKIIYARPHEPER-VYVSAHSGAGIDLLKKAVQ 358
E VL ++GA + P + VYNKID ++ P R +Y+SA + G+D L +A++
Sbjct 315 EKVLSDLGAIETPRINVYNKID-------LLEIVPSGNNRDIYISAKNKIGLDRLLEAIE 367
Query 359 ECLMGQRQAFDLILKPIHGKLRTQLYNLNVIDSEHFDDQG 398
L + + + + L + E FD++G
Sbjct 368 RELFKETEVVSFLFPYEKTREYNYLKERGKVIEEDFDEKG 407
>A0L4B2 GTPase HflX [Magnetococcus marinus (strain ATCC BAA-1437
/ JCM 17883 / MC-1)]
Length=432
Score = 282 bits (722), Expect = 3e-94
Identities = 159/352 (45%), Positives = 227/352 (64%), Gaps = 4/352 (1%)
Query 29 EEFALLASSAGAERLEHIYAQRVKPDAKLFIGSGKAEEIAERVEALDASLVIFDHALSPA 88
+E L+++AG E K + GSG+ EE+A R+E + + + +HAL+P
Sbjct 31 DELVHLSTTAGLEVHATQLLSLQKAVPATYFGSGQVEELARRIEEDEIDVAVVNHALTPI 90
Query 89 QERNLEKIMKCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKHLSTRLVRGWSGGFEQQ 148
Q+RNLEK + +V+DRTGLIL+IFA RART EG +QVELA L + +RLVR W+ E+Q
Sbjct 91 QQRNLEKKLNAKVVDRTGLILEIFAARARTREGIMQVELASLMYQQSRLVRSWTH-LERQ 149
Query 149 KGGIGLRG-PGETQLETDRRLIRIRMIQLKDKLDKVQQTRLQGRAARQKAAIPTVSLVGY 207
+GG+GLRG PGE Q+E DRRLIR R+ +LK +L++V++TR R RQ + TV+LVGY
Sbjct 150 RGGVGLRGGPGERQIEVDRRLIRERIHKLKKQLEEVERTRALQRQPRQDIPLFTVALVGY 209
Query 208 TNAGKSTLFNHLANSDVYAADQLFATLDPTLRRLDWDGIGTVVLADTVGFVRNLQHDLIE 267
TNAGKSTLFN L + V A D+LFATLDPT+R +D G ++L+DTVGF+R L H L+
Sbjct 210 TNAGKSTLFNLLTRAGVLAEDKLFATLDPTMRAVDLPDGGRILLSDTVGFIRQLPHQLVA 269
Query 268 SFKATLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLKEIGAD-APVLRVYNKIDVSGDE 326
+FKATLEE + A +LLH++D S P+ +E+V GVL+E+ L VYNKID +
Sbjct 270 AFKATLEEVMSADMLLHVVDLSDPEWERYVESVNGVLQELEVQHTRTLTVYNKID-RLES 328
Query 327 AKIIYARPHEPERVYVSAHSGAGIDLLKKAVQECLMGQRQAFDLILKPIHGK 378
I+ + + VSA +G G++ L ++ + +++IL G+
Sbjct 329 RGILERELARGDTIGVSAQTGEGVEPLLSELRRAVGRAMLRYEVILPVSDGR 380
>D9R4W7 GTPase HflX [Lacrimispora saccharolytica (strain ATCC
35040 / DSM 2544 / NRCC 2533 / WM1)]
Length=423
Score = 276 bits (705), Expect = 7e-92
Identities = 162/367 (44%), Positives = 229/367 (62%), Gaps = 6/367 (2%)
Query 2 ESLDQDQGKERVILVSVSVNILDDLDA--EEFALLASSAGAERLEHIYAQRVKPDAKLFI 59
E ++ + +ERVILV+VS +D +E L +AGA ++ + R + ++
Sbjct 3 ELIELKEIEERVILVAVSTGDEEDAKGSLDELEELVKTAGAVAVDKVIQNRERIHPGTYL 62
Query 60 GSGKAEEIAERVEALDASLVIFDHALSPAQERNLEKIMKCRVIDRTGLILDIFAQRARTH 119
G GK EEI +R+ LDA+ ++ D LSPAQ RNLE + +V+DRT +ILDIFA RA T
Sbjct 63 GKGKIEEIKDRIWELDATGIVCDDELSPAQLRNLEGALDTKVMDRTMVILDIFASRAVTR 122
Query 120 EGKLQVELAQLKHLSTRLVRGWSGGFEQQKGGIGLRGPGETQLETDRRLIRIRMIQLKDK 179
EGK+QVELAQL++ S RLV G + GGIG RGPGE +LE DRRLI R+ LK +
Sbjct 123 EGKIQVELAQLRYRSARLV-GLRSSLSRLGGGIGTRGPGEKKLEMDRRLIHDRIGMLKAE 181
Query 180 LDKVQQTRLQGRAARQKAAIPTVSLVGYTNAGKSTLFNHLANSDVYAADQLFATLDPTLR 239
L+ V++ R R R K +P ++VGYTNAGKSTL N L ++ + A D+LFATLDPT R
Sbjct 182 LEDVKRHREVVRQQRDKNHVPAAAIVGYTNAGKSTLLNRLTDAGILAEDKLFATLDPTTR 241
Query 240 RLDWDGIGTVVLADTVGFVRNLQHDLIESFKATLEETLEATLLLHIIDSSSPDMLEQIEA 299
L G ++L DTVGF+R L H LIE+FK+TLEE + ++LH++D S+P M Q+
Sbjct 242 NLSLPGGQQILLTDTVGFIRKLPHHLIEAFKSTLEEAKYSDIILHVVDCSNPQMDMQMYV 301
Query 300 VEGVLKEIG-ADAPVLRVYNKIDVSGDEAKIIYARPHEPERVYVSAHSGAGIDLLKKAVQ 358
V L+E+G D ++ V+NKID + +A +I +V +SA +G G+D L ++
Sbjct 302 VYETLRELGICDKIMITVFNKIDAA--DAGVILRDVSSDHQVRISAKTGEGLDELINLLE 359
Query 359 ECLMGQR 365
L Q+
Sbjct 360 TILRNQK 366
>D3FTV4 GTPase HflX [Alkalihalophilus pseudofirmus (strain ATCC
BAA-2126 / JCM 17055 / OF4)]
Length=423
Score = 269 bits (688), Expect = 2e-89
Identities = 163/396 (41%), Positives = 234/396 (59%), Gaps = 9/396 (2%)
Query 11 ERVILVSVSVNILDD---LDAEEFALLASSAGAERLEHIYAQRVKPDAKLFIGSGKAEEI 67
E VILV VN D+ E LA +A + + I +R K ++ ++G GK +E+
Sbjct 10 EHVILVGCQVNREDEEFEQSIAELESLAKTAKGKVVGTITQKREKVESSTYVGKGKVQEL 69
Query 68 AERVEALDASLVIFDHALSPAQERNLEKIMKCRVIDRTGLILDIFAQRARTHEGKLQVEL 127
+E +A LVIF+ L +Q RNL VIDRT LILDIFA RA++ EGKLQVEL
Sbjct 70 VHLIEETEADLVIFNDELQASQMRNLHAECGIAVIDRTQLILDIFASRAKSREGKLQVEL 129
Query 128 AQLKHLSTRLVRGWSGGFEQQKGGIGLRGPGETQLETDRRLIRIRMIQLKDKLDKVQQTR 187
AQLK+L RL G +Q GGIG RGPGETQLETDRR IR RM +++ +L+ V R
Sbjct 130 AQLKYLLPRL-SGQGLALSRQGGGIGTRGPGETQLETDRRHIRRRMNEIERQLEAVVNHR 188
Query 188 LQGRAARQKAAIPTVSLVGYTNAGKSTLFNHLANSDVYAADQLFATLDPTLRRLDWDGIG 247
++ R R+K A ++LVGYTNAGKSTL N L +D DQLFATLDPT R+L
Sbjct 189 VRYREKRKKNAAIQLALVGYTNAGKSTLLNRLTKADTLEEDQLFATLDPTTRQLHLPSGF 248
Query 248 TVVLADTVGFVRNLQHDLIESFKATLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLKEI 307
+V+++DTVGF+++L L+ SF++TLEE EA LLLH++D S PD + V +++E+
Sbjct 249 SVLMSDTVGFIQDLPTTLVASFRSTLEELKEADLLLHVVDCSHPDYEQHERTVIKLIEEL 308
Query 308 GADA-PVLRVYNKIDVSGDEAKIIYARPHEPERVYVSAHSGAGIDLLKKAVQECLMGQRQ 366
A + P L +YNK D D ++ H + + +SA++ + LK +++ L G
Sbjct 309 EAHSIPQLLIYNKADQKTD----VFIPTHTKDSIIMSAYNEEDLLALKVKIEQALKGMMM 364
Query 367 AFDLILKPIHGKLRTQLYNLNVIDSEHFDDQGQLHL 402
+ I+K G + +I ++ FD+ + ++
Sbjct 365 PYRSIIKADEGHILAAARQETMIHTQQFDESREAYV 400
>C1F407 GTPase HflX [Acidobacterium capsulatum (strain ATCC 51196
/ DSM 11244 / BCRC 80197 / JCM 7670 / NBRC 15755 / NCIMB
13165 / 161)]
Length=432
Score = 266 bits (681), Expect = 4e-88
Identities = 170/384 (44%), Positives = 226/384 (59%), Gaps = 6/384 (2%)
Query 30 EFALLASSAGAERLEHIYAQRVKPDAKLFIGSGKAEEIAERVEALDASLVIFDHALSPAQ 89
EF L SAGAE + +R + DA IGSGK EE+ E+ A +++F L+P Q
Sbjct 41 EFRELVLSAGAEIAAEVQQRRGRADAATLIGSGKVEEVRAVAESSHADVIVFGQNLTPTQ 100
Query 90 ERNLEKIMKCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKHLSTRLVRGWSGGFEQQK 149
RNLE + RVIDRT LILDIFA+ ART EG LQVELAQL+++ RL G +
Sbjct 101 LRNLENALPGRVIDRTQLILDIFARHARTREGMLQVELAQLEYMLPRLT-GRGREMSRLG 159
Query 150 GGIGLRGPGETQLETDRRLIRIRMIQLKDKLDKVQQTRLQGRAARQKAAIPTVSLVGYTN 209
GGIG RGPGETQLETDRR I+ R+ LK +L+ V++ R Q R R+ +PTV+LVGYTN
Sbjct 160 GGIGTRGPGETQLETDRRRIQRRISTLKGELESVRRIRSQQRQRREAVPVPTVALVGYTN 219
Query 210 AGKSTLFNHLANSDVYAADQLFATLDPTLRRLDWDGIGTVVLADTVGFVRNLQHDLIESF 269
AGKSTLFN L + V A+ ++FATLDP LR + V+L+DTVGF+R+L LI SF
Sbjct 220 AGKSTLFNALTGAGVLASSRMFATLDPKLRAIVLPSRRKVLLSDTVGFIRDLPPTLISSF 279
Query 270 KATLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLKEIGA-DAPVLRVYNKIDVSGDEAK 328
+ATLEE +A +LLH+ D SS E V+ VL E+GA D P + V NK+D+ E +
Sbjct 280 RATLEEVQKAEVLLHVQDCSSATREEHRAEVKHVLAELGAGDKPQIEVLNKVDLLSPEEQ 339
Query 329 IIYARPHEPERVYVSAHSGAGIDLLKKAVQECLMGQRQAFDLILKP-IHGKLRTQLYNLN 387
H + +SA +G G++ L + + E L + P G++ +
Sbjct 340 EGLRSGH-GRPMAISARTGMGLEDLLERIDEALQADPMVEARLRVPQSEGEVIAAIEAGG 398
Query 388 VIDSEHFDDQGQLHLHVVMAPQKL 411
VI + F +G L V AP L
Sbjct 399 VIRNREF--EGNLVFLKVSAPASL 420
>P94478 GTPase HflX [Bacillus subtilis (strain 168)]
Length=420
Score = 260 bits (664), Expect = 9e-86
Identities = 163/401 (41%), Positives = 242/401 (60%), Gaps = 11/401 (3%)
Query 5 DQDQGKERVILVSVSVNILDDL----DAEEFALLASSAGAERLEHIYAQRVKPDAKLFIG 60
+Q+ +E+ ILV + + D EE A L +A + L + +R + DA +IG
Sbjct 3 EQETIQEKAILVGCQLPHITDEHFENSMEELASLTKTADGKVLTSVTQKRNRADAATYIG 62
Query 61 SGKAEEIAERVEALDASLVIFDHALSPAQERNLEKIMKCRVIDRTGLILDIFAQRARTHE 120
GK EE+ VE L+A L+IF+ LSP+Q ++L ++ ++IDRT LILDIFA+RART E
Sbjct 63 KGKVEELKALVEELEADLLIFNDELSPSQLKSLATAIEVKMIDRTQLILDIFAKRARTRE 122
Query 121 GKLQVELAQLKHLSTRLVRGWSGGFEQQKGGIGLRGPGETQLETDRRLIRIRMIQLKDKL 180
GKLQ+ELAQL++ RL G +Q GGIG RGPGET+LETDRR IR R+ ++ +L
Sbjct 123 GKLQIELAQLQYALPRLT-GQGINLSRQGGGIGARGPGETKLETDRRHIRNRIHEINTQL 181
Query 181 DKVQQTRLQGRAARQKAAIPTVSLVGYTNAGKSTLFNHLANSDVYAADQLFATLDPTLRR 240
V + R + R R+K + ++LVGYTNAGKST FN L ++D Y D LFATLDP R+
Sbjct 182 STVIRHRSRYRERRKKNGVLQIALVGYTNAGKSTWFNRLTSADSYEEDLLFATLDPMTRK 241
Query 241 LDWDGIGTVVLADTVGFVRNLQHDLIESFKATLEETLEATLLLHIIDSSSPDMLEQIEAV 300
+ +V+L+DTVGF+++L LI +F++TLEE EA L+LH+IDSS+ D + V
Sbjct 242 MVLPSGYSVLLSDTVGFIQDLPTTLIAAFRSTLEEVKEADLILHLIDSSNEDYAGHEKTV 301
Query 301 EGVLKEIGA-DAPVLRVYNKIDVSGDEAKIIYARPHEPERVYVSAHSGAGIDLLKKAVQE 359
+L+E+ A D P+L YNK D + R H + VSA K+A+Q
Sbjct 302 LRLLEELEADDIPMLTAYNKRDQKLPDFIPTAGRDH----IMVSAKFEDDAAAFKEAIQR 357
Query 360 CLMGQ-RQAFDLILKPIHGKLRTQLYNLNVIDSEHFDDQGQ 399
L + +F+ + GKL +++ + ++D +F+++ +
Sbjct 358 YLRQELLTSFEAHVPASEGKLLSRIKSETMVDRFYFNEENE 398
>Q3AFV0 GTPase HflX [Carboxydothermus hydrogenoformans (strain
ATCC BAA-161 / DSM 6008 / Z-2901)]
Length=414
Score = 252 bits (643), Expect = 1e-82
Identities = 149/369 (40%), Positives = 221/369 (60%), Gaps = 7/369 (2%)
Query 29 EEFALLASSAGAERLEHIYAQRVKPDAKLFIGSGKAEEIAERVEALDASLVIFDHALSPA 88
EEF L + G E ++ I + P + G GK +EI E ++ + +L+ L+P
Sbjct 21 EEFLALLKTRGIEAVDIISQRLEHPVPATYFGYGKVQEIGELLKKHNLNLLAVGGDLTPT 80
Query 89 QERNLEKIMKCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKHLSTRLVRGWSGGFEQQ 148
Q +NLE+I++ V+DRT +IL+IFA+ A THEGK+QVELA+L + R+ G +
Sbjct 81 QAKNLEEILEVTVVDRTQIILEIFAEHAHTHEGKIQVELARLMYNLPRIT-GLGRVLSRL 139
Query 149 KGGIGLRGPGETQLETDRRLIRIRMIQLKDKLDKVQQTRLQGRAARQKAAIPTVSLVGYT 208
GGIG RGPGET+LE RR IR R+ +L+ +L +++Q R R+ R +A +P V+LVGYT
Sbjct 140 GGGIGTRGPGETKLEVLRRTIRKRIAELRRELKEIEQNRKVKRSRRLEAGVPIVALVGYT 199
Query 209 NAGKSTLFNHLANSDVYAADQLFATLDPTLRRLDWDGIGTVVLADTVGFVRNLQHDLIES 268
NAGKSTL N L + V A D+LFATLDPT+R+L G ++L DTVGF+ N+ + E+
Sbjct 200 NAGKSTLLNALTGAGVLAEDKLFATLDPTVRKLTLPGGQKLLLIDTVGFIENMPPLIKEA 259
Query 269 FKATLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLKEIGADAPVLRVYNKIDVSGDEAK 328
FK+TLE EA L+LH++D ++P EQ VE +L E+ PV+ VYNK+D+ +
Sbjct 260 FKSTLEVVHEAELILHVVDGANPYREEQEAVVEKILTEMKVRVPVITVYNKVDLLPEPVL 319
Query 329 IIYARPHEPERVYVSAHSGAGIDLLKKAVQECLMGQRQAFDLILKPIHG-KLRTQLYNLN 387
+ R V +SA +G ++LL K ++E L Q +L K+ NL
Sbjct 320 FLGKR-----AVAISARTGYNMELLLKLIEENLFWQEVTVKAVLPFAQAFKIGDLKENLK 374
Query 388 VIDSEHFDD 396
+I+ E+ +
Sbjct 375 LINLEYLPE 383
>A6H294 GTPase HflX [Flavobacterium psychrophilum (strain ATCC
49511 / DSM 21280 / CIP 103535 / JIP02/86)]
Length=413
Score = 249 bits (635), Expect = 1e-81
Identities = 136/294 (46%), Positives = 196/294 (67%), Gaps = 5/294 (2%)
Query 29 EEFALLASSAGAERLEHIYAQRVKPDAKLFIGSGKAEEIAERVEALDASLVIFDHALSPA 88
+E L +AG E ++ + +P+ K F+G+GK EEI V S ++FD L+P+
Sbjct 32 DELEFLTFTAGGEVVKRFSQKMERPNPKTFLGTGKIEEINLYVLENGISTIVFDDELTPS 91
Query 89 QERNLEKIMKCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKHLSTRLVRGWSGGFEQQ 148
Q++N+ KI+ C+++DRT LILDIFAQRA T + QVELAQ +L RL W+ E+Q
Sbjct 92 QQKNISKIIDCKILDRTHLILDIFAQRAETSYARTQVELAQCIYLLPRLSGMWT-HLERQ 150
Query 149 KGGIGLRGPGETQLETDRRLIRIRMIQLKDKLDKVQQTRLQGRAARQKAAIPTVSLVGYT 208
KGGIG+RGPGET++ETDRR++R R+ LK+K+ + + + R R A+ V+LVGYT
Sbjct 151 KGGIGMRGPGETEIETDRRIVRDRIALLKEKIKIIDKQQATQRGNR--GAMVRVALVGYT 208
Query 209 NAGKSTLFNHLANSDVYAADQLFATLDPTLRRLDWDGIGTVVLADTVGFVRNLQHDLIES 268
N GKSTL N + SDV+ ++LFATLD T+R++ + +L+DTVGF+R L L++S
Sbjct 209 NVGKSTLMNAVGKSDVFVENKLFATLDTTVRKVVIKNL-PFLLSDTVGFIRKLPTQLVDS 267
Query 269 FKATLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLKEI-GADAPVLRVYNKID 321
FK+TL+E EA LLLH++D S D + I+AV +L +I AD P + V+NKID
Sbjct 268 FKSTLDEVREADLLLHVVDISHQDFEDHIDAVNKILLDIKSADKPTIMVFNKID 321
>Q9Z873 GTPase HflX [Chlamydia pneumoniae]
Length=472
Score = 224 bits (570), Expect = 3e-71
Identities = 143/377 (38%), Positives = 213/377 (56%), Gaps = 13/377 (3%)
Query 29 EEFALLASSAGAERLEHIYAQRVKPDAKLFIGSGKAEEIAERVEALDA-SLVIFDHALSP 87
+E LA S G LE P A +I GK EEI E ++ + +I D ++P
Sbjct 55 DELISLADSCGISVLETRSWILKTPSASTYINVGKLEEIEEILKEFPSIGTLIIDEEITP 114
Query 88 AQERNLEKIMKCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKHLSTRLVRGWSGGFEQ 147
+Q+RNLEK + V+DRT LIL+IF+ RA T E +QV+LAQ ++L RL R W G +
Sbjct 115 SQQRNLEKRLGLVVLDRTELILEIFSSRALTAEANIQVQLAQARYLLPRLKRLW-GHLSR 173
Query 148 QKGGIG----LRGPGETQLETDRRLIRIRMIQLKDKLDKVQQTRLQGRAARQKAAIPTVS 203
QK G G ++G GE Q+E DRR++R R+ +L +L V + R + R + + IPT +
Sbjct 174 QKSGGGSGGFVKGEGEKQIELDRRMVRERIHKLSAQLKAVIKQRAERRKVKSRRGIPTFA 233
Query 204 LVGYTNAGKSTLFNHLANSDVYAADQLFATLDPTLRRLDWDGIGTVVLADTVGFVRNLQH 263
L+GYTN+GKSTL N L +D Y D+LFATLDP R+ G V+L DTVGF+R L H
Sbjct 234 LIGYTNSGKSTLLNLLTAADTYVEDKLFATLDPKTRKCVLPGGRHVLLTDTVGFIRKLPH 293
Query 264 DLIESFKATLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLKEIGADAP-VLRVYNKIDV 322
L+ +FK+TLE +LLH++D+S P LE ++ + +E+ + P ++ V NK+D
Sbjct 294 TLVAAFKSTLEAAFHEDVLLHVVDASHPLALEHVQTTYDLFQELKIEKPRIITVLNKVDR 353
Query 323 SGDEAKIIYARPHEPERVYVSAHSGAGIDLLKKAVQECLMGQRQAFDLILK---PIHGKL 379
+ + R P V +SA +G GI L + E + Q ++ + L +GK
Sbjct 354 LPQGSIPMKLRLLSPLPVLISAKTGEGIQNLLSLMTEII--QEKSLHVTLNFPYTEYGKF 411
Query 380 RTQLYNLNVIDSEHFDD 396
T+L + V+ S + +
Sbjct 412 -TELCDAGVVASSRYQE 427
>O43824 Putative GTP-binding protein 6 [Homo sapiens]
Length=516
Score = 154 bits (390), Expect = 6e-45
Identities = 112/345 (32%), Positives = 175/345 (51%), Gaps = 20/345 (6%)
Query 28 AEEFALLASSAGAERLEHIYAQRVKPDAKLFIGSGKAEEIAERVEALDASLVIFDHA--L 85
AE AL+ + G ++ + PD KL G G E + E++ +F + +
Sbjct 122 AEATALVHTLDGWSVVQTMVVSTKTPDRKLIFGKGNFEHLTEKIRGSPDITCVFLNVERM 181
Query 86 SPAQERNLEKIMKCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKHLSTRLVRGWSGGF 145
+ ++ LE V DR ++L IF ART E +LQV LA++ + L R + +
Sbjct 182 AAPTKKELEAAWGVEVFDRFTVVLHIFRCNARTKEARLQVALAEMPLHRSNLKRDVAHLY 241
Query 146 EQQKGGIGLR---GPGETQLETDRRLIRIRMIQLKDKLDKVQQTRLQGRAARQKAAIPTV 202
G+G R G GE+ ++ +RL+R + +++ LD++++ R R R + P +
Sbjct 242 R----GVGSRYIMGSGESFMQLQQRLLREKEAKIRKALDRLRKKRHLLRRQRTRREFPVI 297
Query 203 SLVGYTNAGKSTLFNHLA-NSDVYAADQLFATLDPTLRRLDWDGIGTVVLADTVGFVRNL 261
S+VGYTN GK+TL L ++ + DQLFATLD T TV+ DT+GF+ L
Sbjct 298 SVVGYTNCGKTTLIKALTGDAAIQPRDQLFATLDVTAHAGTLPSRMTVLYVDTIGFLSQL 357
Query 262 QHDLIESFKATLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLKEIGADAPVL----RVY 317
H LIESF ATLE+ + L+LH+ D S P+ Q +V L+ + AP+L V+
Sbjct 358 PHGLIESFSATLEDVAHSDLILHVRDVSHPEAELQKCSVLSTLRGLQLPAPLLDSMVEVH 417
Query 318 NKIDVSGDEAKIIYARPHEPERVYVSAHSGAGIDLLKKAVQECLM 362
NK+D+ + P EP V VSA G G+ LK + ++
Sbjct 418 NKVDL------VPGYSPTEPNVVPVSALRGHGLQELKAELDAAVL 456
>Q980M3 GTPase HflX [Saccharolobus solfataricus (strain ATCC 35092
/ DSM 1617 / JCM 11322 / P2)]
Length=356
Score = 121 bits (304), Expect = 5e-34
Identities = 94/339 (28%), Positives = 176/339 (52%), Gaps = 13/339 (4%)
Query 29 EEFALLASSAGAERLEHIYAQRVKPDAKLFIGSGKAEEIAERVEALDASLVIFDHALSPA 88
EE A+ ++ IY P+ K +I K ++I E ++L+IF+ L P
Sbjct 13 EEEAIALVEGANYKVTSIYKLPKSPNVKFYIQYDKLQQIKNDEEI--STLIIFEQ-LKPR 69
Query 89 QERNLEKIMKCR-VIDRTGLILDIFAQRARTHEGKLQVELAQLKHLSTRLVRGWSGG-FE 146
N+ + +K + V+D+ L+L+IFA A + E K+Q+ELA+LK+ + ++
Sbjct 70 HFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIELARLKYELPIIKETYTKSKIG 129
Query 147 QQKGGIGLRGPGETQLETDRRLIRIRMIQLKDKLDKVQQTRLQGRAARQKAAIPTVSLVG 206
+Q+G +G G +E+ + + R+ +L +L+ ++ + + + ++ IP++ +VG
Sbjct 130 EQQGPLGA---GTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVG 186
Query 207 YTNAGKSTLFNHLANSDVYAADQLFATLDPTLRRLDWDGIGTVVLADTVGFVRNLQHDLI 266
YTN+GK++LFN L +LF T+ P + + ++L DTVGF+R + ++
Sbjct 187 YTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFIRGIPPQIV 245
Query 267 ESFKATLEETLEATLLLHIIDSSSPD--MLEQIEAVEGVLKEIGADA-PVLRVYNKID-V 322
++F TL E + L+ +IDS+ + ++E +++ +L+EIG P+L NKID +
Sbjct 246 DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI 305
Query 323 SGDEAKIIYARPHEPERVYVSAHSGAGIDLLKKAVQECL 361
+GD K + + +Y I LK+ E L
Sbjct 306 NGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELL 344
>P25522 tRNA modification GTPase MnmE [Escherichia coli (strain
K12)]
Length=454
Score = 64.3 bits (155), Expect = 3e-14
Identities = 64/257 (25%), Positives = 111/257 (43%), Gaps = 15/257 (6%)
Query 175 QLKDKLDKVQQTRLQGRAARQKAAIPTVSLVGYTNAGKSTLFNHLANSDVYAADQLFATL 234
QL D + + R + R V + G NAGKS+L N LA + + T
Sbjct 192 QLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT 251
Query 235 DPTLRR-LDWDGIGTVVLADTVGFVRNLQHDLIESFKATLEETLEATLLLHIIDSSSPDM 293
LR + DG+ ++ DT G + +E +A +L ++D ++ D
Sbjct 252 RDVLREHIHIDGMPLHII-DTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA 310
Query 294 LEQIEAVEGVLKEIGADAPVLRVYNKIDVSGDEAKIIYARPHEPERVYVSAHSGAGIDLL 353
++ E + + A P+ V NK D++G+ + H R+ SA +G G+D+L
Sbjct 311 VDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRL--SARTGEGVDVL 368
Query 354 KKAVQECLMGQRQAFDLILKPIHGKLRTQLYNLNVID--SEHFDDQGQLHLHVVMAPQKL 411
+ ++ Q FD ++ G + +L ++ +EH QG+ L A + L
Sbjct 369 RNHLK-----QSMGFDTNME---GGFLARRRHLQALEQAAEHL-QQGKAQLLGAWAGELL 419
Query 412 EQLIRQAHLSLDEILGE 428
+ +R A +L EI GE
Sbjct 420 AEELRLAQQNLSEITGE 436
>Q9H4K7 Mitochondrial ribosome-associated GTPase 2 [Homo sapiens]
Length=406
Score = 57.0 bits (136), Expect = 6e-12
Identities = 47/154 (31%), Positives = 75/154 (49%), Gaps = 5/154 (3%)
Query 204 LVGYTNAGKSTLFNHLANSDVYAADQLFATLDPTLRRLDWDGIGTVVLADTVGFVRNLQH 263
+VG+ NAGKS+L ++N+ A F TL P + + ++G + +AD G +R H
Sbjct 229 MVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRG-AH 287
Query 264 DLIESFKATLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLK--EIGADA-PVLRVYNKI 320
A L LL ++D S P+ Q++ ++ L+ E G A P V NKI
Sbjct 288 QNRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAIVANKI 347
Query 321 DVSGDEAKIIYARPHEPERVYV-SAHSGAGIDLL 353
D+ +A + R H + V V SA +G ++ L
Sbjct 348 DLPEAQANLSQLRDHLGQEVIVLSALTGENLEQL 381
>Q8L7L0 GTP-binding protein OBGC, chloroplastic [Arabidopsis thaliana]
Length=681
Score = 57.4 bits (137), Expect = 6e-12
Identities = 68/248 (27%), Positives = 105/248 (42%), Gaps = 28/248 (11%)
Query 199 IPTVSLVGYTNAGKSTLFNHLANSDVYAADQLFATLDPTLRRLDWDGIGTVVLADTVGFV 258
+ V +VG NAGKSTL + ++ + A+ F TL P L + +D T+V+AD G +
Sbjct 378 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 437
Query 259 RNLQHDLIESFKATLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLKEIG---ADAPVLR 315
H L T + L+H++D S+P + EAV L+ A+ P +
Sbjct 438 EG-AHRGFGLGHEFLRHTERCSALVHVVDGSAPQPELEFEAVRLELELFSPEIAEKPYVV 496
Query 316 VYNKIDVSGDEAK------IIYARPHEPERVYVSAHSG------AGIDLLKK-----AVQ 358
YNK+D+ K + AR EP + G + +LLKK A
Sbjct 497 AYNKMDLPDAYEKWPMFQETLRARGIEPFCMSAVQREGTHEVISSVYELLKKYRAANAEP 556
Query 359 ECLMGQ-RQAFDLILKPIHGKLRTQLYNLNVIDSEHFDDQGQLHLHVVMAP-QKLEQLIR 416
+ L Q + D + K I + R + V F D G HVV A Q+ Q+
Sbjct 557 KALFDQANENLDHVAKKIDKERRAAINEFEV-----FRDSGTRAWHVVGAGLQRFVQMTN 611
Query 417 QAHLSLDE 424
++ D+
Sbjct 612 WRYMDSDK 619
>B8GYI7 GTPase Obg/CgtA [Caulobacter vibrioides (strain NA1000
/ CB15N)]
Length=354
Score = 55.8 bits (133), Expect = 1e-11
Identities = 54/173 (31%), Positives = 76/173 (44%), Gaps = 17/173 (10%)
Query 199 IPTVSLVGYTNAGKSTLFNHLANSDVYAADQLFATLDPTLRRLDWDGIGTVVLADTVGFV 258
I V LVG NAGKST + + AD F TL P L +D VLAD G +
Sbjct 159 IADVGLVGLPNAGKSTFLAAASAAKPKIADYPFTTLTPNLGVVDLSSSERFVLADIPGLI 218
Query 259 RNLQH--DLIESFKATLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLKEIG---ADAPV 313
L F +E + L+H+ID++ D+ E + G L+ G AD
Sbjct 219 EGASEGAGLGTRFLGHVE---RSATLIHLIDATQDDVAGAYETIRGELEAYGDELADKAE 275
Query 314 LRVYNKIDVSGDEAKIIYARPHEPERV------YVSAHSGAGI-DLLKKAVQE 359
+ NKID +E + + E E V VS SG G+ +LL+ A ++
Sbjct 276 ILALNKIDALDEET--LAEKVAELEAVSGIKPRLVSGVSGQGVTELLRAAYKQ 326
>Q9WYA4 tRNA modification GTPase MnmE [Thermotoga maritima (strain
ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)]
Length=450
Score = 55.8 bits (133), Expect = 1e-11
Identities = 61/208 (29%), Positives = 97/208 (47%), Gaps = 21/208 (10%)
Query 157 PGETQLETDRRLIRIRMIQ--LKDKLDKVQQTRLQGRAARQKAAIPTVSLVGYTNAGKST 214
P E + T + R+ I+ L ++L K L R R + +VG N GKST
Sbjct 174 PDEIETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLR-------MVIVGKPNVGKST 226
Query 215 LFNHLANSD-VYAADQLFATLDPTLRRLDWDGIGTVVLADTVGFVRNLQHDLIE--SFKA 271
L N L N D D T D + GI + DT G VR+ +DL+E +
Sbjct 227 LLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI-LFRIVDTAG-VRSETNDLVERLGIER 284
Query 272 TLEETLEATLLLHIIDSSSPDMLEQIEAVEGVLKEIGADAPVLRVYNKIDV--SGDEAKI 329
TL+E +A ++L ++D+SSP E + +E + + L V NK+DV +E +I
Sbjct 285 TLQEIEKADIVLFVLDASSPLDEEDRKILERI-----KNKRYLVVINKVDVVEKINEEEI 339
Query 330 IYARPHEPERVYVSAHSGAGIDLLKKAV 357
+ V +SA G G++ L++++
Sbjct 340 KNKLGTDRHMVKISALKGEGLEKLEESI 367
Score = 19.2 bits (38), Expect = 4.6
Identities = 10/42 (24%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
Query 262 QHDLIESFKATLEETLEATLLLHIIDSSSPDMLEQIEAVEGV 303
Q L+E+ K LE+ +++ +D +S D+ + ++ V
Sbjct 388 QKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERALNLLDEV 429
Lambda K H a alpha
0.320 0.137 0.382 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2759646
Database: 0fec12521e41819119f90a6c2173f9ad.SwissProt.fasta
Posted date: May 20, 2024 5:02 PM
Number of letters in database: 7,958
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40