Comparative Genomics

ACIAD3022 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: e7863ce100896f4172226cbace4f954b.SwissProt.fasta
           26 sequences; 3,832 total letters



Query= ACIAD3022

Length=154
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

O34777 Organic hydroperoxide resistance transcriptional regulator...  135     5e-45
Q49ZX3 HTH-type transcriptional regulator SarZ [Staphylococcus sa...  99.0    1e-30
Q7A6X2 HTH-type transcriptional regulator MgrA [Staphylococcus au...  90.9    2e-27
Q99VT5 HTH-type transcriptional regulator MgrA [Staphylococcus au...  90.9    2e-27
Q5HHY2 HTH-type transcriptional regulator MgrA [Staphylococcus au...  90.9    2e-27
P0C1S0 HTH-type transcriptional regulator MgrA [Staphylococcus au...  90.9    2e-27
Q2G0B1 HTH-type transcriptional regulator MgrA [Staphylococcus au...  90.9    2e-27
Q8CN77 HTH-type transcriptional regulator SarZ [Staphylococcus ep...  90.9    2e-27
Q5HLK8 HTH-type transcriptional regulator SarZ [Staphylococcus ep...  90.9    2e-27
Q4L8Q3 HTH-type transcriptional regulator SarZ [Staphylococcus ha...  89.0    9e-27
Q99RP3 HTH-type transcriptional regulator SarZ [Staphylococcus au...  84.0    8e-25
Q2YZ47 HTH-type transcriptional regulator SarZ [Staphylococcus au...  84.0    8e-25
Q2FEB2 HTH-type transcriptional regulator SarZ [Staphylococcus au...  84.0    8e-25
Q5HDG9 HTH-type transcriptional regulator SarZ [Staphylococcus au...  84.0    8e-25
Q2FVN3 HTH-type transcriptional regulator SarZ [Staphylococcus au...  84.0    8e-25
P9WME8 HTH-type transcriptional repressor MT2955 [Mycobacterium t...  53.1    4e-13
P67748 HTH-type transcriptional repressor Mb2911 [Mycobacterium b...  53.1    4e-13
P9WME9 HTH-type transcriptional repressor Rv2887 [Mycobacterium t...  53.1    4e-13
P96708 Uncharacterized HTH-type transcriptional regulator YdgJ [B...  50.1    9e-12
P97247 Uncharacterized HTH-type transcriptional regulator YsmB [B...  49.3    1e-11
P0DPR8 HTH-type transcriptional regulator FarR [Neisseria gonorrh...  47.8    5e-11
P62573 Homoprotocatechuate degradative operon repressor [Escheric...  44.7    7e-10
B0FXI7 HTH-type transcriptional repressor IacR [Pseudomonas putida]   44.7    8e-10
P0A2T4 Multiple antibiotic resistance protein MarR [Salmonella ty...  43.1    2e-09
O31672 HTH-type transcriptional regulator MhqR [Bacillus subtilis...  42.7    3e-09


>O34777 Organic hydroperoxide resistance transcriptional regulator 
[Bacillus subtilis (strain 168)]
Length=147

 Score = 135 bits (340),  Expect = 5e-45
 Identities = 66/145 (46%), Positives = 101/145 (70%), Gaps = 0/145 (0%)

Query  9    MQQDASILELDNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEI  68
            M+     ++L+NQLCFL+Y+++  + + Y+ LL  L +TYPQYL +L+LWE + LTV ++
Sbjct  1    MENKFDHMKLENQLCFLLYASSREMTKQYKPLLDKLNITYPQYLALLLLWEHETLTVKKM  60

Query  69   GSRLFLESSTLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDIPHQIAQ  128
            G +L+L+S TLTP+LK++E  GL++RKRS  DER V+I+L+  G  LK++A+DIP  I  
Sbjct  61   GEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVDIPGTILG  120

Query  129  ASACNLDELMQLKEQLETLRTNISQ  153
             S  + ++L QLK  L TL   + Q
Sbjct  121  LSKQSGEDLKQLKSALYTLLETLHQ  145


>Q49ZX3 HTH-type transcriptional regulator SarZ [Staphylococcus 
saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 
20229 / NCIMB 8711 / NCTC 7292 / S-41)]
Length=146

 Score = 99.0 bits (245),  Expect = 1e-30
 Identities = 49/128 (38%), Positives = 80/128 (63%), Gaps = 0/128 (0%)

Query  18   LDNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESS  77
            L+ QLCFL Y ++  + + Y   L    LTY  Y+V+L +  +++L +  +G+R+FL+S 
Sbjct  8    LERQLCFLFYVSSKEIIKKYTSYLKEFDLTYTGYIVLLAIGVEEKLNIKTLGARVFLDSG  67

Query  78   TLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDIPHQIAQASACNLDEL  137
            TLTPLLKKLE  G ++R R   DER + I L+++G+++K+   +I  Q+       +DE 
Sbjct  68   TLTPLLKKLEKKGYVTRTREIDDERNLQIALTTKGKDIKEPLSNISKQVFNEFDMEVDEA  127

Query  138  MQLKEQLE  145
            + LKE L+
Sbjct  128  IDLKETLQ  135


>Q7A6X2 HTH-type transcriptional regulator MgrA [Staphylococcus 
aureus (strain N315)]
Length=147

 Score = 90.9 bits (224),  Expect = 2e-27
 Identities = 42/128 (33%), Positives = 81/128 (63%), Gaps = 1/128 (1%)

Query  18   LDNQLCFLIYSTNLALHQLY-RKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLES  76
            L  QLCF +Y+    +++ Y  K+     LTYPQ+LV+ +LW++  + V ++ + L L++
Sbjct  7    LKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDT  66

Query  77   STLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDIPHQIAQASACNLDE  136
             T++PLLK++E + L+ R+RS  D+R+V I L+ + + ++ +  +   ++A AS+ + DE
Sbjct  67   GTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDE  126

Query  137  LMQLKEQL  144
            + +L   L
Sbjct  127  VKELNRLL  134


>Q99VT5 HTH-type transcriptional regulator MgrA [Staphylococcus 
aureus (strain Mu50 / ATCC 700699)]
Length=147

 Score = 90.9 bits (224),  Expect = 2e-27
 Identities = 42/128 (33%), Positives = 81/128 (63%), Gaps = 1/128 (1%)

Query  18   LDNQLCFLIYSTNLALHQLY-RKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLES  76
            L  QLCF +Y+    +++ Y  K+     LTYPQ+LV+ +LW++  + V ++ + L L++
Sbjct  7    LKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDT  66

Query  77   STLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDIPHQIAQASACNLDE  136
             T++PLLK++E + L+ R+RS  D+R+V I L+ + + ++ +  +   ++A AS+ + DE
Sbjct  67   GTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDE  126

Query  137  LMQLKEQL  144
            + +L   L
Sbjct  127  VKELNRLL  134


>Q5HHY2 HTH-type transcriptional regulator MgrA [Staphylococcus 
aureus (strain COL)]
Length=147

 Score = 90.9 bits (224),  Expect = 2e-27
 Identities = 42/128 (33%), Positives = 81/128 (63%), Gaps = 1/128 (1%)

Query  18   LDNQLCFLIYSTNLALHQLY-RKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLES  76
            L  QLCF +Y+    +++ Y  K+     LTYPQ+LV+ +LW++  + V ++ + L L++
Sbjct  7    LKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDT  66

Query  77   STLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDIPHQIAQASACNLDE  136
             T++PLLK++E + L+ R+RS  D+R+V I L+ + + ++ +  +   ++A AS+ + DE
Sbjct  67   GTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDE  126

Query  137  LMQLKEQL  144
            + +L   L
Sbjct  127  VKELNRLL  134


>P0C1S0 HTH-type transcriptional regulator MgrA [Staphylococcus 
aureus]
Length=147

 Score = 90.9 bits (224),  Expect = 2e-27
 Identities = 42/128 (33%), Positives = 81/128 (63%), Gaps = 1/128 (1%)

Query  18   LDNQLCFLIYSTNLALHQLY-RKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLES  76
            L  QLCF +Y+    +++ Y  K+     LTYPQ+LV+ +LW++  + V ++ + L L++
Sbjct  7    LKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDT  66

Query  77   STLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDIPHQIAQASACNLDE  136
             T++PLLK++E + L+ R+RS  D+R+V I L+ + + ++ +  +   ++A AS+ + DE
Sbjct  67   GTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDE  126

Query  137  LMQLKEQL  144
            + +L   L
Sbjct  127  VKELNRLL  134


>Q2G0B1 HTH-type transcriptional regulator MgrA [Staphylococcus 
aureus (strain NCTC 8325 / PS 47)]
Length=147

 Score = 90.9 bits (224),  Expect = 2e-27
 Identities = 42/128 (33%), Positives = 81/128 (63%), Gaps = 1/128 (1%)

Query  18   LDNQLCFLIYSTNLALHQLY-RKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLES  76
            L  QLCF +Y+    +++ Y  K+     LTYPQ+LV+ +LW++  + V ++ + L L++
Sbjct  7    LKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDT  66

Query  77   STLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDIPHQIAQASACNLDE  136
             T++PLLK++E + L+ R+RS  D+R+V I L+ + + ++ +  +   ++A AS+ + DE
Sbjct  67   GTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDE  126

Query  137  LMQLKEQL  144
            + +L   L
Sbjct  127  VKELNRLL  134


>Q8CN77 HTH-type transcriptional regulator SarZ [Staphylococcus 
epidermidis (strain ATCC 12228 / FDA PCI 1200)]
Length=148

 Score = 90.9 bits (224),  Expect = 2e-27
 Identities = 46/132 (35%), Positives = 75/132 (57%), Gaps = 0/132 (0%)

Query  18   LDNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESS  77
            L  QLCFL Y ++  + + Y   L   GLTY  Y+V++ + + ++L + ++G R+FL+S 
Sbjct  8    LSKQLCFLFYVSSKEIIKKYTDYLKEYGLTYTGYIVLMAIEDDEKLNIKKLGERVFLDSG  67

Query  78   TLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDIPHQIAQASACNLDEL  137
            TLTPLLKKLE    + R R  +DER + I+L+ +G++++    DI   +        +E 
Sbjct  68   TLTPLLKKLEKKNYVIRTREEQDERNLQISLTERGKDIQNVLSDISQSVFNEFNITQEET  127

Query  138  MQLKEQLETLRT  149
              L E L+   T
Sbjct  128  QNLVEDLQNFVT  139


>Q5HLK8 HTH-type transcriptional regulator SarZ [Staphylococcus 
epidermidis (strain ATCC 35984 / RP62A)]
Length=148

 Score = 90.9 bits (224),  Expect = 2e-27
 Identities = 46/132 (35%), Positives = 75/132 (57%), Gaps = 0/132 (0%)

Query  18   LDNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESS  77
            L  QLCFL Y ++  + + Y   L   GLTY  Y+V++ + + ++L + ++G R+FL+S 
Sbjct  8    LSKQLCFLFYVSSKEIIKKYTDYLKEYGLTYTGYIVLMAIEDDEKLNIKKLGERVFLDSG  67

Query  78   TLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDIPHQIAQASACNLDEL  137
            TLTPLLKKLE    + R R  +DER + I+L+ +G++++    DI   +        +E 
Sbjct  68   TLTPLLKKLEKKNYVIRTREEQDERNLQISLTERGKDIQNVLSDISQSVFNEFNITQEET  127

Query  138  MQLKEQLETLRT  149
              L E L+   T
Sbjct  128  QNLVEDLQNFVT  139


>Q4L8Q3 HTH-type transcriptional regulator SarZ [Staphylococcus 
haemolyticus (strain JCSC1435)]
Length=147

 Score = 89.0 bits (219),  Expect = 9e-27
 Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 0/133 (0%)

Query  18   LDNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESS  77
            L NQLCFL+Y T+  + + Y   L    LTY  ++V++ +  ++++ +  +G R+FL+S 
Sbjct  8    LSNQLCFLLYVTSKEVIKKYTYYLKKHDLTYTSFMVIMAIENEEKINIKSLGRRVFLDSG  67

Query  78   TLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDIPHQIAQASACNLDEL  137
            TLTPLLKKLE  G + R R   DER + ITL+  G  +K     I  Q+ +    + DE 
Sbjct  68   TLTPLLKKLEKKGYVQRMREKEDERNLQITLTESGINIKPTLKAISDQVFEDFDISQDEK  127

Query  138  MQLKEQLETLRTN  150
              L   L+ + +N
Sbjct  128  DNLVNSLKHVISN  140


>Q99RP3 HTH-type transcriptional regulator SarZ [Staphylococcus 
aureus (strain Mu50 / ATCC 700699)]
Length=148

 Score = 84.0 bits (206),  Expect = 8e-25
 Identities = 41/105 (39%), Positives = 64/105 (61%), Gaps = 0/105 (0%)

Query  18   LDNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESS  77
            L  QLCFL Y ++  + + Y   L    LTY  Y+V++ +   ++L + ++G R+FL+S 
Sbjct  8    LSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSG  67

Query  78   TLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDI  122
            TLTPLLKKLE    + R R  +DER + I+L+ QG+ +K    +I
Sbjct  68   TLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEI  112


>Q2YZ47 HTH-type transcriptional regulator SarZ [Staphylococcus 
aureus (strain bovine RF122 / ET3-1)]
Length=148

 Score = 84.0 bits (206),  Expect = 8e-25
 Identities = 41/105 (39%), Positives = 64/105 (61%), Gaps = 0/105 (0%)

Query  18   LDNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESS  77
            L  QLCFL Y ++  + + Y   L    LTY  Y+V++ +   ++L + ++G R+FL+S 
Sbjct  8    LSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSG  67

Query  78   TLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDI  122
            TLTPLLKKLE    + R R  +DER + I+L+ QG+ +K    +I
Sbjct  68   TLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEI  112


>Q2FEB2 HTH-type transcriptional regulator SarZ [Staphylococcus 
aureus (strain USA300)]
Length=148

 Score = 84.0 bits (206),  Expect = 8e-25
 Identities = 41/105 (39%), Positives = 64/105 (61%), Gaps = 0/105 (0%)

Query  18   LDNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESS  77
            L  QLCFL Y ++  + + Y   L    LTY  Y+V++ +   ++L + ++G R+FL+S 
Sbjct  8    LSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSG  67

Query  78   TLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDI  122
            TLTPLLKKLE    + R R  +DER + I+L+ QG+ +K    +I
Sbjct  68   TLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEI  112


>Q5HDG9 HTH-type transcriptional regulator SarZ [Staphylococcus 
aureus (strain COL)]
Length=148

 Score = 84.0 bits (206),  Expect = 8e-25
 Identities = 41/105 (39%), Positives = 64/105 (61%), Gaps = 0/105 (0%)

Query  18   LDNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESS  77
            L  QLCFL Y ++  + + Y   L    LTY  Y+V++ +   ++L + ++G R+FL+S 
Sbjct  8    LSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSG  67

Query  78   TLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDI  122
            TLTPLLKKLE    + R R  +DER + I+L+ QG+ +K    +I
Sbjct  68   TLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEI  112


>Q2FVN3 HTH-type transcriptional regulator SarZ [Staphylococcus 
aureus (strain NCTC 8325 / PS 47)]
Length=148

 Score = 84.0 bits (206),  Expect = 8e-25
 Identities = 41/105 (39%), Positives = 64/105 (61%), Gaps = 0/105 (0%)

Query  18   LDNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESS  77
            L  QLCFL Y ++  + + Y   L    LTY  Y+V++ +   ++L + ++G R+FL+S 
Sbjct  8    LSKQLCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSG  67

Query  78   TLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDI  122
            TLTPLLKKLE    + R R  +DER + I+L+ QG+ +K    +I
Sbjct  68   TLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEI  112


>P9WME8 HTH-type transcriptional repressor MT2955 [Mycobacterium 
tuberculosis (strain CDC 1551 / Oshkosh)]
Length=139

 Score = 53.1 bits (126),  Expect = 4e-13
 Identities = 29/101 (29%), Positives = 53/101 (52%), Gaps = 0/101 (0%)

Query  19   DNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESST  78
            D  L +L+Y     L       LSPLGLT P+++ + +L +   L+ +E+     +    
Sbjct  6    DAPLGYLLYRVGAVLRPEVSAALSPLGLTLPEFVCLRMLSQSPGLSSAELARHASVTPQA  65

Query  79   LTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQA  119
            +  +L+KLE  G ++R  S    R +  TL+++G+ L ++A
Sbjct  66   MNTVLRKLEDAGAVARPASVSSGRSLPATLTARGRALAKRA  106


>P67748 HTH-type transcriptional repressor Mb2911 [Mycobacterium 
bovis (strain ATCC BAA-935 / AF2122/97)]
Length=139

 Score = 53.1 bits (126),  Expect = 4e-13
 Identities = 29/101 (29%), Positives = 53/101 (52%), Gaps = 0/101 (0%)

Query  19   DNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESST  78
            D  L +L+Y     L       LSPLGLT P+++ + +L +   L+ +E+     +    
Sbjct  6    DAPLGYLLYRVGAVLRPEVSAALSPLGLTLPEFVCLRMLSQSPGLSSAELARHASVTPQA  65

Query  79   LTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQA  119
            +  +L+KLE  G ++R  S    R +  TL+++G+ L ++A
Sbjct  66   MNTVLRKLEDAGAVARPASVSSGRSLPATLTARGRALAKRA  106


>P9WME9 HTH-type transcriptional repressor Rv2887 [Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=139

 Score = 53.1 bits (126),  Expect = 4e-13
 Identities = 29/101 (29%), Positives = 53/101 (52%), Gaps = 0/101 (0%)

Query  19   DNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESST  78
            D  L +L+Y     L       LSPLGLT P+++ + +L +   L+ +E+     +    
Sbjct  6    DAPLGYLLYRVGAVLRPEVSAALSPLGLTLPEFVCLRMLSQSPGLSSAELARHASVTPQA  65

Query  79   LTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQA  119
            +  +L+KLE  G ++R  S    R +  TL+++G+ L ++A
Sbjct  66   MNTVLRKLEDAGAVARPASVSSGRSLPATLTARGRALAKRA  106


>P96708 Uncharacterized HTH-type transcriptional regulator YdgJ 
[Bacillus subtilis (strain 168)]
Length=164

 Score = 50.1 bits (118),  Expect = 9e-12
 Identities = 30/113 (27%), Positives = 64/113 (57%), Gaps = 8/113 (7%)

Query  45   GLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESSTLTPLLKKLEHLGLLSRKRSTRDERQV  104
            G++  +  ++ +L+  D+++ S++  ++ ++S+ +T  LK+LE  G++SR+R   D R  
Sbjct  51   GISQSRLELLTLLYHADEISQSDLQKKVNIDSAAVTRHLKQLESKGMVSRRRKPEDNRIT  110

Query  105  IITLSSQGQE-----LKQQALDIPHQIAQASACNLDELMQLKEQLETLRTNIS  152
            ++ L+ QG+E      K++   +   +A  SA   +E   L + L  +R NI+
Sbjct  111  LVRLTDQGRERIESSKKEKERFMKEMLANVSA---EERRLLIDVLARMRNNIN  160


>P97247 Uncharacterized HTH-type transcriptional regulator YsmB 
[Bacillus subtilis (strain 168)]
Length=146

 Score = 49.3 bits (116),  Expect = 1e-11
 Identities = 24/88 (27%), Positives = 50/88 (57%), Gaps = 0/88 (0%)

Query  33   LHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESSTLTPLLKKLEHLGLL  92
            + Q  R++L+   +T PQ++ +  L+E   +T+ E+  +++L  ST T L+ +++   L+
Sbjct  23   IKQKGREILNQYAITPPQFVGLQWLYELGDMTIGELSGKMYLACSTTTDLIDRMQKNELV  82

Query  93   SRKRSTRDERQVIITLSSQGQELKQQAL  120
             R +   D R V I L  +G+ + Q+ +
Sbjct  83   ERVKDPADRRVVRIHLLPEGERIIQEVI  110


>P0DPR8 HTH-type transcriptional regulator FarR [Neisseria gonorrhoeae]
Length=146

 Score = 47.8 bits (112),  Expect = 5e-11
 Identities = 24/87 (28%), Positives = 52/87 (60%), Gaps = 0/87 (0%)

Query  32   ALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESSTLTPLLKKLEHLGL  91
            AL   +R +L+   +T  Q+ ++ +L E   L   ++ ++  +   +LT +L +LE  GL
Sbjct  20   ALMTQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGL  79

Query  92   LSRKRSTRDERQVIITLSSQGQELKQQ  118
            + R + + D+R+V + L+S+G++L ++
Sbjct  80   VVRLKPSNDQRRVYLKLTSEGEKLYEE  106


>P62573 Homoprotocatechuate degradative operon repressor [Escherichia 
coli]
Length=148

 Score = 44.7 bits (104),  Expect = 7e-10
 Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 5/135 (4%)

Query  18   LDNQLCFLIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESS  77
            + + L   +     A    +R ++    LT  Q+ ++ +L E   +   ++  R  +   
Sbjct  1    MHDSLTIALLQAREAAMSYFRPIVKRHNLTEQQWRIVRILAESPSMDFHDLAYRACILRP  60

Query  78   TLTPLLKKLEHLGLLSRKRSTRDERQVIITLSSQGQEL----KQQALDIPHQI-AQASAC  132
            +LT +L ++E  GL+ R +   D+R++ I+L+ +GQ L    + Q  +   QI AQ +A 
Sbjct  61   SLTGILTRMERDGLVLRLKPINDQRKLYISLTKEGQALYNRAQTQIEEAYRQIEAQFTAE  120

Query  133  NLDELMQLKEQLETL  147
             + +L  L E+   L
Sbjct  121  KMQQLTHLLEEFIAL  135


>B0FXI7 HTH-type transcriptional repressor IacR [Pseudomonas putida]
Length=167

 Score = 44.7 bits (104),  Expect = 8e-10
 Identities = 28/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (2%)

Query  35   QLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESSTLTPLLKKLEHLGLLSR  94
            Q   +LL  + L  P++ V+ +L E  + ++SEI +    + ST+T ++ +++  GL+  
Sbjct  46   QNMERLLKKIDLDVPRWRVLWILNENGESSISEISTHAIAKLSTITKIVYRMKEDGLVDT  105

Query  95   KRSTRDERQVIITLSSQGQELKQQALDIPHQIAQASACNLDE--LMQLKEQLETLRTNI  151
              S  D R   + ++  G +  ++  ++  ++ Q S   L E  + +L   LE +  N+
Sbjct  106  APSPEDGRVTQVRITEVGLQNIERMQEVTRELFQRSFKGLTEAQVQRLNRMLEVVFHNL  164


>P0A2T4 Multiple antibiotic resistance protein MarR [Salmonella 
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=144

 Score = 43.1 bits (100),  Expect = 2e-09
 Identities = 36/126 (29%), Positives = 60/126 (48%), Gaps = 3/126 (2%)

Query  25   LIYSTNLALHQLYRKLLSPLGLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESSTLTPLLK  84
            LIY  N    +L    LSPL +T  Q+ V+  +     +T  E+   L ++   LT +L 
Sbjct  17   LIYMVNQKKDRLLNNYLSPLDITATQFKVLCSIRCAGCITPVELKKVLSVDLGALTRMLD  76

Query  85   KLEHLGLLSRKRSTRDERQVIITLSSQGQELKQQALDIPHQ-IAQASACNL--DELMQLK  141
            +L   G + R  +  D+R V++ L+  G  + +Q    P Q + Q    NL  DE+  L+
Sbjct  77   RLLCKGWIERLPNPNDKRGVLVKLTPDGAAICEQCHQRPGQDLHQELTKNLTADEVATLE  136

Query  142  EQLETL  147
              L+ +
Sbjct  137  YLLKKI  142


>O31672 HTH-type transcriptional regulator MhqR [Bacillus subtilis 
(strain 168)]
Length=145

 Score = 42.7 bits (99),  Expect = 3e-09
 Identities = 26/101 (26%), Positives = 50/101 (50%), Gaps = 7/101 (7%)

Query  45   GLTYPQYLVMLVLWEKDQLTVSEIGSRLFLESSTLTPLLKKLEHLGLLSRKRSTRDERQV  104
            GL   ++ V+ +L+ K    + +IG ++ L S ++T ++ KLE   LL RK S  D R  
Sbjct  31   GLNPTEFAVLELLYHKGDQPLQQIGDKILLASGSITYVVDKLEQKELLIRKASPTDRRVT  90

Query  105  IITLSSQGQELKQQALDIPHQIAQASACNLDELMQLKEQLE  145
               ++ +G       + + + I    A  +DE++ +  + E
Sbjct  91   FAQITEKG-------IGLLNDIFPDHAAEIDEMISVLSEEE  124



Lambda      K        H        a         alpha
   0.322    0.135    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 335790


  Database: e7863ce100896f4172226cbace4f954b.SwissProt.fasta
    Posted date:  May 20, 2024  7:23 PM
  Number of letters in database: 3,832
  Number of sequences in database:  26



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40