Comparative Genomics

ACIAD3040 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 6502e059abd5b05bfdbbea5623be92f3.TrEMBL.fasta
           28 sequences; 2,844 total letters



Query= ACIAD3040

Length=98
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A7G2SGD8 Integration host factor subunit alpha [Acinetobacter sp]   190     2e-68
N9C3J8 Integration host factor subunit alpha [Acinetobacter ursin...  189     6e-68
A0A009ZSC1 Integration host factor subunit alpha [Acinetobacter s...  189     6e-68
A0A3R9CW03 Integration host factor subunit alpha [Acinetobacter s...  189     6e-68
A0A2N6V9I9 Integration host factor subunit alpha [Acinetobacter u...  189     6e-68
A0A1P8EJL0 Integration host factor subunit alpha [Acinetobacter s...  188     8e-68
A0A0M1I4S6 Integration host factor subunit alpha [Acinetobacter s...  188     8e-68
N9BQS9 Integration host factor subunit alpha [Acinetobacter soli ...  188     8e-68
A0A1H7WKB1 Integration host factor subunit alpha [Acinetobacter s...  187     2e-67
A0A031LXD0 Integration host factor subunit alpha [Acinetobacter s...  187     2e-67
A0A145WWC7 Integration host factor subunit alpha [Acinetobacter s...  187     2e-67
A0A6G8S737 Integration host factor subunit alpha [Acinetobacter l...  187     2e-67
V2TSG1 Integration host factor subunit alpha [Acinetobacter necta...  186     5e-67
A0A3R8ZPB1 Integration host factor subunit alpha [Acinetobacter s...  186     5e-67
A0A217EFT8 Integration host factor subunit alpha [Acinetobacter a...  186     7e-67
A0A077KVN5 Integration host factor subunit alpha [Acinetobacter g...  186     7e-67
A0A4Q7BEM4 Integration host factor subunit alpha [Acinetobacter s...  186     7e-67
N9ER68 Integration host factor subunit alpha [Acinetobacter berez...  186     7e-67
A0A6G8RT14 Integration host factor subunit alpha [Acinetobacter s...  186     1e-66
A0A0N9VYB9 Integration host factor subunit alpha [Acinetobacter e...  185     1e-66
Q8RQS5 DNA-binding protein HU [Streptococcus intermedius]             77.0    1e-23
E7DZI5 DNA-binding protein HU [Ligilactobacillus agilis]              73.2    4e-22
A0A8B6X318 Integration host factor subunit beta [Derxia gummosa D...  70.9    4e-21
Q7BH47 DNA-binding protein HU [Lactococcus lactis]                    68.6    2e-20
Q8SME4 DNA-binding protein Hu-like protein [Cyanidioschyzon merolae]  66.2    3e-19
Q4PLR8 DNA-binding protein HupB [Mycolicibacterium smegmatis]         63.2    3e-17
Q7BEQ7 Bacterial nucleoid protein HU beta subunit [Pseudomonas pu...  60.5    3e-17
Q14F22 Integration host factor subunit beta [Escherichia coli]        57.4    6e-16


>A0A7G2SGD8 Integration host factor subunit alpha [Acinetobacter 
sp]
Length=97

 Score = 190 bits (482),  Expect = 2e-68
 Identities = 96/97 (99%), Positives = 96/97 (99%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHV LSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVNLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97


>N9C3J8 Integration host factor subunit alpha [Acinetobacter ursingii 
ANC 3649]
Length=97

 Score = 189 bits (479),  Expect = 6e-68
 Identities = 95/97 (98%), Positives = 96/97 (99%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQ+
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQD  97


>A0A009ZSC1 Integration host factor subunit alpha [Acinetobacter 
sp. 479375]
Length=97

 Score = 189 bits (479),  Expect = 6e-68
 Identities = 95/97 (98%), Positives = 96/97 (99%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQ+
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQD  97


>A0A3R9CW03 Integration host factor subunit alpha [Acinetobacter 
sp. FDAARGOS_515]
Length=97

 Score = 189 bits (479),  Expect = 6e-68
 Identities = 95/97 (98%), Positives = 96/97 (99%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQ+
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQD  97


>A0A2N6V9I9 Integration host factor subunit alpha [Acinetobacter 
ursingii]
Length=97

 Score = 189 bits (479),  Expect = 6e-68
 Identities = 95/97 (98%), Positives = 96/97 (99%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQ+
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQD  97


>A0A1P8EJL0 Integration host factor subunit alpha [Acinetobacter 
soli]
Length=97

 Score = 188 bits (478),  Expect = 8e-68
 Identities = 95/97 (98%), Positives = 95/97 (98%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALI GEHVKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALITGEHVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQE
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQE  97


>A0A0M1I4S6 Integration host factor subunit alpha [Acinetobacter 
sp. C15]
Length=97

 Score = 188 bits (478),  Expect = 8e-68
 Identities = 95/97 (98%), Positives = 95/97 (98%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALI GEHVKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALITGEHVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQE
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQE  97


>N9BQS9 Integration host factor subunit alpha [Acinetobacter soli 
NIPH 2899]
Length=97

 Score = 188 bits (478),  Expect = 8e-68
 Identities = 95/97 (98%), Positives = 95/97 (98%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALI GEHVKLSGFGNFELRDKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALITGEHVKLSGFGNFELRDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQE
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQE  97


>A0A1H7WKB1 Integration host factor subunit alpha [Acinetobacter 
sp. DSM 11652]
Length=98

 Score = 187 bits (475),  Expect = 2e-67
 Identities = 94/96 (98%), Positives = 96/96 (100%), Gaps = 0/96 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKA+MADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKR+
Sbjct  1   MTALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96


>A0A031LXD0 Integration host factor subunit alpha [Acinetobacter 
sp. Ver3]
Length=98

 Score = 187 bits (475),  Expect = 2e-67
 Identities = 94/96 (98%), Positives = 96/96 (100%), Gaps = 0/96 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKA+MADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKR+
Sbjct  1   MTALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96


>A0A145WWC7 Integration host factor subunit alpha [Acinetobacter 
sp. TGL-Y2]
Length=98

 Score = 187 bits (475),  Expect = 2e-67
 Identities = 94/96 (98%), Positives = 96/96 (100%), Gaps = 0/96 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKA+MADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKR+
Sbjct  1   MTALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96


>A0A6G8S737 Integration host factor subunit alpha [Acinetobacter 
lanii]
Length=98

 Score = 187 bits (475),  Expect = 2e-67
 Identities = 94/96 (98%), Positives = 96/96 (100%), Gaps = 0/96 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKA+MADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKR+
Sbjct  1   MTALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96


>V2TSG1 Integration host factor subunit alpha [Acinetobacter nectaris 
CIP 110549]
Length=97

 Score = 186 bits (473),  Expect = 5e-67
 Identities = 93/97 (96%), Positives = 97/97 (100%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKA+MADHLSELT+LNRREAKQMVELFF+EISQALIAGEHVKLSGFGNFELRDKR+
Sbjct  1   MTALTKAEMADHLSELTALNRREAKQMVELFFEEISQALIAGEHVKLSGFGNFELRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97


>A0A3R8ZPB1 Integration host factor subunit alpha [Acinetobacter 
soli]
Length=97

 Score = 186 bits (473),  Expect = 5e-67
 Identities = 94/97 (97%), Positives = 94/97 (97%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALI GEHVKLSGFGNFEL DKRE
Sbjct  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALITGEHVKLSGFGNFELHDKRE  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQE
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQE  97


>A0A217EFT8 Integration host factor subunit alpha [Acinetobacter 
apis]
Length=97

 Score = 186 bits (472),  Expect = 7e-67
 Identities = 93/97 (96%), Positives = 96/97 (99%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKA+MADHLSELT+LNRREAKQMVELFFDEISQALI GEHVKLSGFGNFELRDKR+
Sbjct  1   MTALTKAEMADHLSELTALNRREAKQMVELFFDEISQALIEGEHVKLSGFGNFELRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97


>A0A077KVN5 Integration host factor subunit alpha [Acinetobacter 
guillouiae]
Length=98

 Score = 186 bits (472),  Expect = 7e-67
 Identities = 94/97 (97%), Positives = 96/97 (99%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKA+MADHLSELTSLNRREAKQMVELFFDEISQALIAGE VKLSGFGNFELRDKR+
Sbjct  1   MTALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97


>A0A4Q7BEM4 Integration host factor subunit alpha [Acinetobacter 
sp. WCHAc060025]
Length=98

 Score = 186 bits (472),  Expect = 7e-67
 Identities = 94/97 (97%), Positives = 96/97 (99%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKA+MADHLSELTSLNRREAKQMVELFFDEISQALIAGE VKLSGFGNFELRDKR+
Sbjct  1   MTALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97


>N9ER68 Integration host factor subunit alpha [Acinetobacter bereziniae 
LMG 1003 = CIP 70.12]
Length=98

 Score = 186 bits (472),  Expect = 7e-67
 Identities = 94/97 (97%), Positives = 96/97 (99%), Gaps = 0/97 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKA+MADHLSELTSLNRREAKQMVELFFDEISQALIAGE VKLSGFGNFELRDKR+
Sbjct  1   MTALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97


>A0A6G8RT14 Integration host factor subunit alpha [Acinetobacter 
shaoyimingii]
Length=98

 Score = 186 bits (471),  Expect = 1e-66
 Identities = 93/96 (97%), Positives = 96/96 (100%), Gaps = 0/96 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKA+MADHLSELTSLNRREAKQMVELFF+EISQALIAGEHVKLSGFGNFELRDKR+
Sbjct  1   MTALTKAEMADHLSELTSLNRREAKQMVELFFEEISQALIAGEHVKLSGFGNFELRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96


>A0A0N9VYB9 Integration host factor subunit alpha [Acinetobacter 
equi]
Length=98

 Score = 185 bits (470),  Expect = 1e-66
 Identities = 93/96 (97%), Positives = 95/96 (99%), Gaps = 0/96 (0%)

Query  1   MTALTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRE  60
           MTALTKA+MADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKR+
Sbjct  1   MTALTKAEMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRQ  60

Query  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQ  96
           RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVG EQ
Sbjct  61  RPGRNPKTGEEIPISARRVVTFRAGQKFRQRVGNEQ  96


>Q8RQS5 DNA-binding protein HU [Streptococcus intermedius]
Length=91

 Score = 77.0 bits (188),  Expect = 1e-23
 Identities = 36/87 (41%), Positives = 58/87 (67%), Gaps = 0/87 (0%)

Query  6   KADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPGRN  65
           K D+   ++E T L ++++   V+  F  +++ L AGE V+L GFGNFE+R++  R GRN
Sbjct  4   KQDLIAKVAEATELTKKDSAAAVDAVFAAVTEFLSAGEKVQLIGFGNFEVRERAARKGRN  63

Query  66  PKTGEEIPISARRVVTFRAGQKFRQRV  92
           P+TG+EI I+A +V  F+AG+  +  V
Sbjct  64  PQTGKEITIAASKVPAFKAGKALKDAV  90


>E7DZI5 DNA-binding protein HU [Ligilactobacillus agilis]
Length=101

 Score = 73.2 bits (178),  Expect = 4e-22
 Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 0/87 (0%)

Query  6   KADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPGRN  65
           KA + ++++E T L +++A   V+  F  I   L  GE V+L GFGNFE+R++  R GRN
Sbjct  14  KAQLIENVAEKTGLTKKDATVAVDAVFGSIQDFLKDGEKVQLIGFGNFEVRERAARKGRN  73

Query  66  PKTGEEIPISARRVVTFRAGQKFRQRV  92
           P+TG EI I A +V  F+ G+  +  V
Sbjct  74  PQTGAEIEIPASKVPAFKPGKALKDAV  100


>A0A8B6X318 Integration host factor subunit beta [Derxia gummosa 
DSM 723]
Length=108

 Score = 70.9 bits (172),  Expect = 4e-21
 Identities = 33/90 (37%), Positives = 59/90 (66%), Gaps = 1/90 (1%)

Query  4   LTKADMADHLSE-LTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           +TK+++ + L+E    L  R+A   V+   D +++ L AG  +++ GFG+F L  +  R 
Sbjct  1   MTKSELIERLAERYPQLVARDADFAVKTMLDAMAETLAAGHRIEIRGFGSFSLNQRPPRV  60

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           GRNPK+G+++ + A+RV  F+AG++ R+RV
Sbjct  61  GRNPKSGQKVEVPAKRVPHFKAGKELRERV  90


>Q7BH47 DNA-binding protein HU [Lactococcus lactis]
Length=91

 Score = 68.6 bits (166),  Expect = 2e-20
 Identities = 33/87 (38%), Positives = 54/87 (62%), Gaps = 0/87 (0%)

Query  6   KADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPGRN  65
           K D+   ++  T L ++++++ V  F + +++ L  GE V+L GFG FE R++  R GRN
Sbjct  4   KQDLIAEVAAKTGLTKKDSEKAVNAFGEVVTEFLAKGEKVQLIGFGTFETRERAAREGRN  63

Query  66  PKTGEEIPISARRVVTFRAGQKFRQRV  92
           P+TGE I I+A  V  F+AG+  +  V
Sbjct  64  PQTGEAIKIAATVVPAFKAGKALKDAV  90


>Q8SME4 DNA-binding protein Hu-like protein [Cyanidioschyzon merolae]
Length=112

 Score = 66.2 bits (160),  Expect = 3e-19
 Identities = 29/89 (33%), Positives = 53/89 (60%), Gaps = 0/89 (0%)

Query  4   LTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPG  63
           + K ++   ++E   L++++ ++++     +I++ L+ G+ VKL GFG F  + +  R G
Sbjct  1   MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG  60

Query  64  RNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           RNP+TGE + I  R VV F  G   +Q+V
Sbjct  61  RNPRTGERLIIPERHVVVFSPGSDLKQQV  89


>Q4PLR8 DNA-binding protein HupB [Mycolicibacterium smegmatis]
Length=208

 Score = 63.2 bits (152),  Expect = 3e-17
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 0/94 (0%)

Query  4   LTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPG  63
           + KA++ D L+     +RR+A   VE   D I +A+  G+ V ++GFG FE R +  R  
Sbjct  1   MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA  60

Query  64  RNPKTGEEIPISARRVVTFRAGQKFRQRVGTEQE  97
           RNP+TGE + +    V  FR G +F+  +   Q+
Sbjct  61  RNPRTGETVKVKPTSVPAFRPGAQFKAVISGAQK  94


>Q7BEQ7 Bacterial nucleoid protein HU beta subunit [Pseudomonas 
putida]
Length=90

 Score = 60.5 bits (145),  Expect = 3e-17
 Identities = 28/89 (31%), Positives = 53/89 (60%), Gaps = 0/89 (0%)

Query  4   LTKADMADHLSELTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPG  63
           + K+++ D ++    + +  A + ++   + ++ AL  G+ V L GFG F ++++ ER G
Sbjct  1   MNKSELIDAIAASADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERTG  60

Query  64  RNPKTGEEIPISARRVVTFRAGQKFRQRV  92
           RNP+TG+ I I A +V  F+AG+  +  V
Sbjct  61  RNPQTGKAIKIEAAKVPGFKAGKGLKDAV  89


>Q14F22 Integration host factor subunit beta [Escherichia coli]
Length=94

 Score = 57.4 bits (137),  Expect = 6e-16
 Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query  4   LTKADMADHLSELTS-LNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERP  62
           +TK+++ + L+   S +  +  +  V+   + ++  L  GE +++ GFG+F L  +  R 
Sbjct  1   MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT  60

Query  63  GRNPKTGEEIPISARRVVTFRAGQKFRQR  91
           GRNPKTG+++ +  + V  F+ G++ R R
Sbjct  61  GRNPKTGDKVELEGKYVPHFKPGKELRDR  89



Lambda      K        H        a         alpha
   0.324    0.137    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 132392


  Database: 6502e059abd5b05bfdbbea5623be92f3.TrEMBL.fasta
    Posted date:  May 12, 2024  12:52 PM
  Number of letters in database: 2,844
  Number of sequences in database:  28



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40