BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: d09569a3577e19e4faf816c7bde702c7.TrEMBL.fasta
20 sequences; 2,871 total letters
Query= ACIAD3064
Length=129
Score E
Sequences producing significant alignments: (Bits) Value
Q6F851 Putative DNA uptake protein and/or related DNA-binding pro... 258 2e-94
A0A7G2SGL0 Transporter [Acinetobacter sp] 258 2e-94
A0A0M1I4Q6 Transporter [Acinetobacter sp. C15] 177 2e-62
N9AH52 Helix-hairpin-helix DNA-binding motif class 1 domain-conta... 177 3e-62
A0A1P8EJM2 Transporter [Acinetobacter soli] 176 4e-62
A0A3R9BB82 ComEA family DNA-binding protein [Acinetobacter soli] 176 6e-62
A0A4R0DIL5 ComEA family DNA-binding protein [Acinetobacter sp. AN... 134 2e-45
A0A4R0FH27 ComEA family DNA-binding protein [Acinetobacter sp. AN... 133 8e-45
A0A4R0EWR6 ComEA family DNA-binding protein [Acinetobacter sp. AN... 132 1e-44
A0A315WGT0 Transporter [Acinetobacter sp. AM] 132 2e-44
A7KAV2 Helix-hairpin-helix DNA-binding motif class 1 domain-conta... 69.7 3e-20
Q3HR28 ComEA family DNA-binding protein [Campylobacter jejuni] 68.6 5e-20
Q9EU10 ComE [Neisseria gonorrhoeae] 68.6 8e-20
O85197 Competence protein [Streptococcus pneumoniae] 67.8 2e-18
D8X0E1 ComEA [Thermoanaerobacterium saccharolyticum] 64.7 2e-17
Q70T35 ComEA protein [Priestia megaterium] 62.8 1e-16
Q46530 Uncharacterized protein ORFE [Dichelobacter nodosus] 57.8 6e-16
Q14984 OriP binding protein [Homo sapiens] 46.6 3e-11
Q14985 OriP binding protein [Homo sapiens] 46.6 7e-11
Q9EYM5 Competence factor ComEA [Thermus thermophilus] 44.7 7e-10
>Q6F851 Putative DNA uptake protein and/or related DNA-binding
protein [Acinetobacter baylyi (strain ATCC 33305 / BD413 /
ADP1)]
Length=128
Score = 258 bits (659), Expect = 2e-94
Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
Query 1 MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQ 60
MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQ
Sbjct 1 MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQ 60
Query 61 QSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE 120
QSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE
Sbjct 61 QSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE 120
Query 121 KNRDRLAI 128
KNRDRLAI
Sbjct 121 KNRDRLAI 128
>A0A7G2SGL0 Transporter [Acinetobacter sp]
Length=128
Score = 258 bits (659), Expect = 2e-94
Identities = 128/128 (100%), Positives = 128/128 (100%), Gaps = 0/128 (0%)
Query 1 MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQ 60
MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQ
Sbjct 1 MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQ 60
Query 61 QSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE 120
QSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE
Sbjct 61 QSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE 120
Query 121 KNRDRLAI 128
KNRDRLAI
Sbjct 121 KNRDRLAI 128
>A0A0M1I4Q6 Transporter [Acinetobacter sp. C15]
Length=128
Score = 177 bits (449), Expect = 2e-62
Identities = 89/128 (70%), Positives = 105/128 (82%), Gaps = 0/128 (0%)
Query 1 MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQ 60
M IR F++ A L +L ++AQ FDQQY AWK+QQ+AHD RL SS S++ L+KP+
Sbjct 1 MMIRIFYSALCALLTSLLFSSSLYAQAFDQQYQAWKSQQQAHDARLQSSHSNYYLAKPSL 60
Query 61 QSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE 120
Q+ TG KVNIN+ATAK+LQQLHGVGEKKAL+IVEYRQQYG+F SVDDLQKVKGIGPKFIE
Sbjct 61 QANTGPKVNINTATAKDLQQLHGVGEKKALSIVEYRQQYGRFNSVDDLQKVKGIGPKFIE 120
Query 121 KNRDRLAI 128
KNR RLAI
Sbjct 121 KNRHRLAI 128
>N9AH52 Helix-hairpin-helix DNA-binding motif class 1 domain-containing
protein [Acinetobacter soli NIPH 2899]
Length=128
Score = 177 bits (448), Expect = 3e-62
Identities = 89/128 (70%), Positives = 105/128 (82%), Gaps = 0/128 (0%)
Query 1 MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQ 60
M IR F+ A L +L ++AQ FDQQY AWK+QQ+AHD RL SS S++ L+KP+
Sbjct 1 MMIRIFYGALCALLTSLLFSSSLYAQAFDQQYQAWKSQQQAHDARLQSSHSNYYLAKPSL 60
Query 61 QSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE 120
Q+ TG KVNIN+ATAK+LQQLHGVGEKKAL+IVEYRQQYG+F SVDDLQKVKGIGPKFIE
Sbjct 61 QANTGPKVNINTATAKDLQQLHGVGEKKALSIVEYRQQYGRFNSVDDLQKVKGIGPKFIE 120
Query 121 KNRDRLAI 128
KNR+RLAI
Sbjct 121 KNRNRLAI 128
>A0A1P8EJM2 Transporter [Acinetobacter soli]
Length=128
Score = 176 bits (447), Expect = 4e-62
Identities = 88/128 (69%), Positives = 105/128 (82%), Gaps = 0/128 (0%)
Query 1 MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQ 60
M IR F++ A L +L ++AQ FDQQY AWK+QQ+AHD R+ SS S++ L+KP+
Sbjct 1 MMIRIFYSALCALLTSLLFSSSLYAQAFDQQYQAWKSQQQAHDARIQSSHSNYYLAKPSL 60
Query 61 QSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE 120
Q+ TG KVNIN+ATAK+LQQLHGVGEKKAL+IVEYRQQYG+F SVDDLQKVKGIGPKFIE
Sbjct 61 QANTGPKVNINTATAKDLQQLHGVGEKKALSIVEYRQQYGRFNSVDDLQKVKGIGPKFIE 120
Query 121 KNRDRLAI 128
KNR RLAI
Sbjct 121 KNRHRLAI 128
>A0A3R9BB82 ComEA family DNA-binding protein [Acinetobacter soli]
Length=128
Score = 176 bits (446), Expect = 6e-62
Identities = 88/128 (69%), Positives = 103/128 (80%), Gaps = 0/128 (0%)
Query 1 MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQ 60
M IR F+ A L +L ++AQ FDQQY AWK+QQ+AHD RL SS S+H L+KP+
Sbjct 1 MMIRIFYGALCALLTSLLFSSSLYAQAFDQQYQAWKSQQQAHDARLQSSHSNHYLAKPSL 60
Query 61 QSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE 120
Q+ G KVNIN+ATAK+LQQLHGVGEKKAL+I+EYRQQYG+F SVDDLQKVKGIGPKFIE
Sbjct 61 QANAGPKVNINTATAKDLQQLHGVGEKKALSIIEYRQQYGRFNSVDDLQKVKGIGPKFIE 120
Query 121 KNRDRLAI 128
KNR RLAI
Sbjct 121 KNRHRLAI 128
>A0A4R0DIL5 ComEA family DNA-binding protein [Acinetobacter sp.
ANC 4910]
Length=134
Score = 134 bits (338), Expect = 2e-45
Identities = 68/122 (56%), Positives = 94/122 (77%), Gaps = 7/122 (6%)
Query 14 LLTLFSMQI-----VFAQGFDQQYDAWKTQQKAHDTRLNSSAS--HHSLSKPTQQSGTGV 66
+LTLF+ I V AQ FDQQY WK QQ+A D RL SS + ++ LSKP+ + +G
Sbjct 13 ILTLFTFLIFGLDRVNAQNFDQQYLNWKAQQQAQDARLGSSRTDANYYLSKPSLNTASGN 72
Query 67 KVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRL 126
K+ +NSAT+++LQQL G+GEKKA AI++YRQQ+GKF +VD+LQ++KGIGPK ++KN+DRL
Sbjct 73 KIRLNSATSEQLQQLSGIGEKKAAAILQYRQQHGKFKTVDELQQIKGIGPKLLQKNKDRL 132
Query 127 AI 128
A+
Sbjct 133 AL 134
>A0A4R0FH27 ComEA family DNA-binding protein [Acinetobacter sp.
ANC 4173]
Length=134
Score = 133 bits (334), Expect = 8e-45
Identities = 68/122 (56%), Positives = 93/122 (76%), Gaps = 7/122 (6%)
Query 14 LLTLFSMQI-----VFAQGFDQQYDAWKTQQKAHDTRLNSSAS--HHSLSKPTQQSGTGV 66
+LTLF+ I V AQ FDQQY WK QQ+A D RL SS + ++ LSKP+ + +G
Sbjct 13 ILTLFTFLIFGLDRVNAQNFDQQYLNWKAQQQAQDARLGSSRTDTNYYLSKPSLNTASGN 72
Query 67 KVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRL 126
K+ +NSAT+ +LQQL G+GEKKA AI++YRQQ+GKF +VD+LQ++KGIGPK ++KN+DRL
Sbjct 73 KIRLNSATSAQLQQLSGIGEKKAEAILQYRQQHGKFKTVDELQQIKGIGPKLLQKNKDRL 132
Query 127 AI 128
A+
Sbjct 133 AL 134
>A0A4R0EWR6 ComEA family DNA-binding protein [Acinetobacter sp.
ANC 4178]
Length=134
Score = 132 bits (333), Expect = 1e-44
Identities = 67/122 (55%), Positives = 94/122 (77%), Gaps = 7/122 (6%)
Query 14 LLTLFSMQI-----VFAQGFDQQYDAWKTQQKAHDTRLNSSAS--HHSLSKPTQQSGTGV 66
+LTLF+ I V AQ FDQQY WK +Q+A D RL SS + ++ LSKP+ + +G
Sbjct 13 ILTLFTFLILGLGRVNAQNFDQQYLNWKAKQQAQDARLGSSGTDANYYLSKPSLNTASGN 72
Query 67 KVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRL 126
K+ +NSAT+++LQQL G+GEKKA AI++YRQQ+GKF +VD+LQ++KGIGPK ++KN+DRL
Sbjct 73 KIRLNSATSEQLQQLSGIGEKKAEAILQYRQQHGKFKTVDELQQIKGIGPKLLQKNKDRL 132
Query 127 AI 128
A+
Sbjct 133 AL 134
>A0A315WGT0 Transporter [Acinetobacter sp. AM]
Length=134
Score = 132 bits (332), Expect = 2e-44
Identities = 67/122 (55%), Positives = 94/122 (77%), Gaps = 7/122 (6%)
Query 14 LLTLFSMQI-----VFAQGFDQQYDAWKTQQKAHDTRLNSSAS--HHSLSKPTQQSGTGV 66
+LTLF+ I V AQ FDQQY WK QQ+A D RL SS + ++ LSKP+ + +G
Sbjct 13 ILTLFTFLIFGLDRVNAQNFDQQYLNWKAQQQAQDARLGSSRTDANYYLSKPSLNTVSGN 72
Query 67 KVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRL 126
K+ +NSAT+++LQQL G+GEKKA AI++YRQQ+GKF ++D+LQ++KGIGPK ++KN+DRL
Sbjct 73 KIRLNSATSEQLQQLSGIGEKKAEAILQYRQQHGKFKTIDELQQIKGIGPKLLQKNKDRL 132
Query 127 AI 128
A+
Sbjct 133 AL 134
>A7KAV2 Helix-hairpin-helix DNA-binding motif class 1 domain-containing
protein [Aeromonas hydrophila]
Length=106
Score = 69.7 bits (169), Expect = 3e-20
Identities = 32/62 (52%), Positives = 44/62 (71%), Gaps = 0/62 (0%)
Query 67 KVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRL 126
KVN+N+A EL L G+GEKKA AIV++R++ GKF +V+ L V GIGP +E NRD +
Sbjct 44 KVNLNTANINELTALKGIGEKKAQAIVDFREKQGKFTTVEQLADVSGIGPATLEANRDMI 103
Query 127 AI 128
+
Sbjct 104 IV 105
>Q3HR28 ComEA family DNA-binding protein [Campylobacter jejuni]
Length=79
Score = 68.6 bits (166), Expect = 5e-20
Identities = 33/61 (54%), Positives = 47/61 (77%), Gaps = 1/61 (2%)
Query 68 VNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRLA 127
VNIN+AT KEL+ L+G+GE KA +I+EYR++ F S+DDL+KVKGIG K EK ++ +
Sbjct 19 VNINTATLKELKSLNGIGEAKAKSILEYRKE-ANFTSIDDLKKVKGIGDKLFEKIKNDIT 77
Query 128 I 128
+
Sbjct 78 V 78
>Q9EU10 ComE [Neisseria gonorrhoeae]
Length=99
Score = 68.6 bits (166), Expect = 8e-20
Identities = 34/61 (56%), Positives = 44/61 (72%), Gaps = 0/61 (0%)
Query 68 VNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRLA 127
VNIN+A+ +EL+ L G+G KA AI EYR Q G F SVDDL KVKGIGP + K +D+ +
Sbjct 21 VNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLIKVKGIGPAVLAKLKDQAS 80
Query 128 I 128
+
Sbjct 81 V 81
>O85197 Competence protein [Streptococcus pneumoniae]
Length=216
Score = 67.8 bits (164), Expect = 2e-18
Identities = 35/78 (45%), Positives = 53/78 (68%), Gaps = 8/78 (10%)
Query 59 TQQSGTGV--------KVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQK 110
+QQ+G G KVN+N A+ +EL+Q+ G+G K+A I+++R+ GKF SVD+L+K
Sbjct 138 SQQTGLGTASSISKEKKVNLNKASLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKK 197
Query 111 VKGIGPKFIEKNRDRLAI 128
V GIG K IEK +D + +
Sbjct 198 VSGIGGKTIEKLKDYVTV 215
>D8X0E1 ComEA [Thermoanaerobacterium saccharolyticum]
Length=204
Score = 64.7 bits (156), Expect = 2e-17
Identities = 28/75 (37%), Positives = 47/75 (63%), Gaps = 0/75 (0%)
Query 54 SLSKPTQQSGTGVKVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKG 113
S K + + K+NIN+AT +EL L G+GE A I+++R+Q+G F ++D+ V
Sbjct 129 SNDKSSGSNAANGKININTATKEELDTLPGIGEVTAQRIIDFREQHGNFQKIEDIMNVSR 188
Query 114 IGPKFIEKNRDRLAI 128
IGPK E+ +D++ +
Sbjct 189 IGPKLFEQIKDKITV 203
>Q70T35 ComEA protein [Priestia megaterium]
Length=214
Score = 62.8 bits (151), Expect = 1e-16
Identities = 30/61 (49%), Positives = 43/61 (70%), Gaps = 0/61 (0%)
Query 68 VNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRLA 127
VNIN+A ELQ L+G+G KA AIV YR++ G F +V+DL +V GIG K +EK + ++
Sbjct 153 VNINTANTDELQTLNGIGPSKASAIVSYREENGLFQTVEDLGQVSGIGEKSLEKIKAQIT 212
Query 128 I 128
+
Sbjct 213 V 213
>Q46530 Uncharacterized protein ORFE [Dichelobacter nodosus]
Length=71
Score = 57.8 bits (138), Expect = 6e-16
Identities = 26/49 (53%), Positives = 37/49 (76%), Gaps = 0/49 (0%)
Query 67 KVNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIG 115
K+N+N+AT +EL L G+G KA AIV+YR+++G F S++ L VKGIG
Sbjct 21 KINLNTATVEELVLLKGIGTVKAQAIVDYRKEHGDFTSLEQLSSVKGIG 69
>Q14984 OriP binding protein [Homo sapiens]
Length=110
Score = 46.6 bits (109), Expect = 3e-11
Identities = 21/51 (41%), Positives = 36/51 (71%), Gaps = 0/51 (0%)
Query 70 INSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE 120
+N +A++L+ L +G KKA IV +R+ +G F+ V+DL++V+GI K +E
Sbjct 41 LNEGSARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQME 91
>Q14985 OriP binding protein [Homo sapiens]
Length=170
Score = 46.6 bits (109), Expect = 7e-11
Identities = 21/51 (41%), Positives = 36/51 (71%), Gaps = 0/51 (0%)
Query 70 INSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIE 120
+N +A++L+ L +G KKA IV +R+ +G F+ V+DL++V+GI K +E
Sbjct 101 LNEGSARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQME 151
>Q9EYM5 Competence factor ComEA [Thermus thermophilus]
Length=298
Score = 44.7 bits (104), Expect = 7e-10
Identities = 27/59 (46%), Positives = 36/59 (61%), Gaps = 4/59 (7%)
Query 68 VNINSATAKELQQLHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRL 126
V++N A+ +EL L G+G A IVE R +A V+DL KVKGIGP +E+ R L
Sbjct 242 VSLNEASLEELMALPGIGPVLARRIVEGRP----YARVEDLLKVKGIGPATLERLRPYL 296
Lambda K H a alpha
0.324 0.134 0.395 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 208145
Database: d09569a3577e19e4faf816c7bde702c7.TrEMBL.fasta
Posted date: Jun 3, 2024 5:24 PM
Number of letters in database: 2,871
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
