BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: bca30fd324263b316d56f61f93aa6f04.SwissProt.fasta
23 sequences; 3,299 total letters
Query= ACIAD3082
Length=165
Score E
Sequences producing significant alignments: (Bits) Value
P0ACS4 Redox-sensitive transcriptional activator SoxR [Shigella f... 155 1e-52
P0ACS3 Redox-sensitive transcriptional activator SoxR [Escherichi... 155 1e-52
P0ACS2 Redox-sensitive transcriptional activator SoxR [Escherichi... 155 1e-52
P0A2R0 Redox-sensitive transcriptional activator SoxR [Salmonella... 153 8e-52
P0A2R1 Redox-sensitive transcriptional activator SoxR [Salmonella... 153 8e-52
Q51506 Redox-sensitive transcriptional activator SoxR [Pseudomona... 149 3e-50
Q9ZHI4 HTH-type transcriptional activator SoxR homolog [Chromobac... 138 6e-46
Q9X5V4 HTH-type transcriptional regulator HmrR [Rhizobium legumin... 55.5 5e-14
P0ACS6 HTH-type transcriptional regulator ZntR [Escherichia coli ... 55.1 9e-14
P0ACS5 HTH-type transcriptional regulator ZntR [Escherichia coli ... 55.1 9e-14
P69413 Mercuric resistance operon regulatory protein [Pseudomonas... 52.4 1e-12
P0A184 Mercuric resistance operon regulatory protein [Pseudomonas... 52.4 1e-12
P0A183 Mercuric resistance operon regulatory protein [Pseudomonas... 52.4 1e-12
P0A2Q8 Mercuric resistance operon regulatory protein [Salmonella ... 51.2 3e-12
P0A2Q9 Mercuric resistance operon regulatory protein [Shigella fl... 51.2 3e-12
P13111 Mercuric resistance operon regulatory protein [Serratia ma... 51.2 3e-12
Q9HV30 Uncharacterized HTH-type transcriptional regulator PA4778 ... 50.8 3e-12
P45277 HTH-type transcriptional regulator ZntR homolog [Haemophil... 50.4 4e-12
Q93CH6 HTH-type transcriptional regulator CueR [Salmonella typhim... 48.9 2e-11
P22853 Mercuric resistance operon regulatory protein [Bacillus ce... 48.1 3e-11
P0A9G4 HTH-type transcriptional regulator CueR [Escherichia coli ... 45.4 3e-10
Q8XD09 HTH-type transcriptional regulator CueR [Escherichia coli ... 45.4 3e-10
Q9X5X4 HTH-type transcriptional regulator HmrR [Sinorhizobium med... 45.4 4e-10
>P0ACS4 Redox-sensitive transcriptional activator SoxR [Shigella
flexneri]
Length=154
Score = 155 bits (391), Expect = 1e-52
Identities = 72/135 (53%), Positives = 98/135 (73%), Gaps = 0/135 (0%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIWSIRTNGNQRRYLRAMLRRIAIIKVAQLVGISLE 73
+T GE+AKRSGV+V + FYE+K LI SIR +GNQRRY R +LR +AIIK+AQ +GI L
Sbjct 12 LTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLA 71
Query 74 ELKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQLDWCIGCGCLSLDQCP 133
+ +AF VLP+ S ++W+++S+ W+ +LD++I TL+ LR +LD CIGCGCLS CP
Sbjct 72 TIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCP 131
Query 134 LRNPDDHYASQSNGA 148
LRNP D + GA
Sbjct 132 LRNPGDRLGEEGTGA 146
>P0ACS3 Redox-sensitive transcriptional activator SoxR [Escherichia
coli O157:H7]
Length=154
Score = 155 bits (391), Expect = 1e-52
Identities = 72/135 (53%), Positives = 98/135 (73%), Gaps = 0/135 (0%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIWSIRTNGNQRRYLRAMLRRIAIIKVAQLVGISLE 73
+T GE+AKRSGV+V + FYE+K LI SIR +GNQRRY R +LR +AIIK+AQ +GI L
Sbjct 12 LTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLA 71
Query 74 ELKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQLDWCIGCGCLSLDQCP 133
+ +AF VLP+ S ++W+++S+ W+ +LD++I TL+ LR +LD CIGCGCLS CP
Sbjct 72 TIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCP 131
Query 134 LRNPDDHYASQSNGA 148
LRNP D + GA
Sbjct 132 LRNPGDRLGEEGTGA 146
>P0ACS2 Redox-sensitive transcriptional activator SoxR [Escherichia
coli (strain K12)]
Length=154
Score = 155 bits (391), Expect = 1e-52
Identities = 72/135 (53%), Positives = 98/135 (73%), Gaps = 0/135 (0%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIWSIRTNGNQRRYLRAMLRRIAIIKVAQLVGISLE 73
+T GE+AKRSGV+V + FYE+K LI SIR +GNQRRY R +LR +AIIK+AQ +GI L
Sbjct 12 LTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLA 71
Query 74 ELKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQLDWCIGCGCLSLDQCP 133
+ +AF VLP+ S ++W+++S+ W+ +LD++I TL+ LR +LD CIGCGCLS CP
Sbjct 72 TIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCP 131
Query 134 LRNPDDHYASQSNGA 148
LRNP D + GA
Sbjct 132 LRNPGDRLGEEGTGA 146
>P0A2R0 Redox-sensitive transcriptional activator SoxR [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=152
Score = 153 bits (386), Expect = 8e-52
Identities = 71/135 (53%), Positives = 96/135 (71%), Gaps = 0/135 (0%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIWSIRTNGNQRRYLRAMLRRIAIIKVAQLVGISLE 73
+T GE+AKRSGV+V + FYE+K LI SIR +GNQRRY R +LR +AIIK+AQ +GI L
Sbjct 12 LTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLA 71
Query 74 ELKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQLDWCIGCGCLSLDQCP 133
+ AF +LP+ S ++W+++S+ W+ +LD++I TL+ LR +LD CIGCGCLS CP
Sbjct 72 TIGDAFGILPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCP 131
Query 134 LRNPDDHYASQSNGA 148
LRNP D GA
Sbjct 132 LRNPGDRLGEHGTGA 146
>P0A2R1 Redox-sensitive transcriptional activator SoxR [Salmonella
typhi]
Length=152
Score = 153 bits (386), Expect = 8e-52
Identities = 71/135 (53%), Positives = 96/135 (71%), Gaps = 0/135 (0%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIWSIRTNGNQRRYLRAMLRRIAIIKVAQLVGISLE 73
+T GE+AKRSGV+V + FYE+K LI SIR +GNQRRY R +LR +AIIK+AQ +GI L
Sbjct 12 LTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLA 71
Query 74 ELKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQLDWCIGCGCLSLDQCP 133
+ AF +LP+ S ++W+++S+ W+ +LD++I TL+ LR +LD CIGCGCLS CP
Sbjct 72 TIGDAFGILPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCP 131
Query 134 LRNPDDHYASQSNGA 148
LRNP D GA
Sbjct 132 LRNPGDRLGEHGTGA 146
>Q51506 Redox-sensitive transcriptional activator SoxR [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=156
Score = 149 bits (376), Expect = 3e-50
Identities = 72/137 (53%), Positives = 93/137 (68%), Gaps = 0/137 (0%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIWSIRTNGNQRRYLRAMLRRIAIIKVAQLVGISLE 73
+++GELA+R+GV+V + FYE K LI S R GNQRR+ R LRR+ +IKVAQ VGI L
Sbjct 10 LSVGELARRAGVAVSALHFYETKGLISSQRNAGNQRRFSRETLRRVVVIKVAQRVGIPLA 69
Query 74 ELKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQLDWCIGCGCLSLDQCP 133
E+ +A LP + S DW ++S WK L ++I LL LR QLD CIGCGCLSL CP
Sbjct 70 EIARALQTLPAGRSPSAADWARLSAQWKEDLTERIDKLLLLRDQLDGCIGCGCLSLQACP 129
Query 134 LRNPDDHYASQSNGAHF 150
LRNP D +++ GAH+
Sbjct 130 LRNPGDQLSAEGPGAHW 146
>Q9ZHI4 HTH-type transcriptional activator SoxR homolog [Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249
/ NBRC 12614 / NCIMB 9131 / NCTC 9757)]
Length=148
Score = 138 bits (347), Expect = 6e-46
Identities = 66/137 (48%), Positives = 91/137 (66%), Gaps = 0/137 (0%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIWSIRTNGNQRRYLRAMLRRIAIIKVAQLVGISLE 73
ITIG LAKR+GV+ +RFYEA+ LI S+ G RRY R +RR++ I+VAQ +G+SL+
Sbjct 6 ITIGRLAKRTGVAASALRFYEARGLIHSVGEAGKTRRYRRDAIRRVSFIRVAQAMGMSLQ 65
Query 74 ELKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQLDWCIGCGCLSLDQCP 133
++ A + LP ++ + DW ++S WK L ++I L +LR QLD CIGCGCLSL++C
Sbjct 66 DIGAALADLPSQRTPTADDWARISQAWKPLLQERIDALCRLRDQLDSCIGCGCLSLERCK 125
Query 134 LRNPDDHYASQSNGAHF 150
L NPDD Q G F
Sbjct 126 LYNPDDKAGEQGCGPRF 142
>Q9X5V4 HTH-type transcriptional regulator HmrR [Rhizobium leguminosarum
bv. viciae]
Length=129
Score = 55.5 bits (132), Expect = 5e-14
Identities = 35/122 (29%), Positives = 64/122 (52%), Gaps = 2/122 (2%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIWSIRTNGNQRRYLRAMLRRIAIIKVAQLVGISLE 73
+ IGE ++RSG+ TIR+YE LI R R Y + ++ ++ ++ +G S+E
Sbjct 1 MNIGEASERSGLPSKTIRYYEDIGLIRPERGGNGYRDYAATDVHKLRFLQRSRGLGFSVE 60
Query 74 ELKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQLDWCI-GCGCLSLDQC 132
E +Q ++ D+ AS D ++ ++D+KI+ L +LR+ L+ + C C
Sbjct 61 ECRQLLALYEDKDRAS-ADVRDIAQTKLTEIDRKIRELTELRRTLEHLVHACHGNDRPDC 119
Query 133 PL 134
P+
Sbjct 120 PI 121
>P0ACS6 HTH-type transcriptional regulator ZntR [Escherichia coli
O157:H7]
Length=141
Score = 55.1 bits (131), Expect = 9e-14
Identities = 35/113 (31%), Positives = 64/113 (57%), Gaps = 5/113 (4%)
Query 16 IGELAKRSGVSVPTIRFYEAKQLI-WSIRTNGNQRRYLRAMLRRIAIIKVAQLVGISLEE 74
IGELAK + V+ TIR+YE +Q++ +RT G R Y + L+R+ I+ A+ +G SLE
Sbjct 4 IGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESDLQRLKFIRHARQLGFSLES 63
Query 75 LKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQL----DWCIG 123
+++ S+ D + + Q+ + + +++ +I L +++ L D C G
Sbjct 64 IRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCG 116
>P0ACS5 HTH-type transcriptional regulator ZntR [Escherichia coli
(strain K12)]
Length=141
Score = 55.1 bits (131), Expect = 9e-14
Identities = 35/113 (31%), Positives = 64/113 (57%), Gaps = 5/113 (4%)
Query 16 IGELAKRSGVSVPTIRFYEAKQLI-WSIRTNGNQRRYLRAMLRRIAIIKVAQLVGISLEE 74
IGELAK + V+ TIR+YE +Q++ +RT G R Y + L+R+ I+ A+ +G SLE
Sbjct 4 IGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESDLQRLKFIRHARQLGFSLES 63
Query 75 LKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQL----DWCIG 123
+++ S+ D + + Q+ + + +++ +I L +++ L D C G
Sbjct 64 IRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCG 116
>P69413 Mercuric resistance operon regulatory protein [Pseudomonas
sp]
Length=144
Score = 52.4 bits (124), Expect = 1e-12
Identities = 32/76 (42%), Positives = 47/76 (62%), Gaps = 6/76 (8%)
Query 3 QSNQENLGQQFITIGELAKRSGVSVPTIRFYEAKQLIWS-IRTNGNQRRYLRAMLRRIAI 61
++N ENL TIG AK +GV+V TIRFY+ K L+ + G+ RRY A + R+
Sbjct 2 ENNLENL-----TIGVFAKAAGVNVETIRFYQRKGLLLEPDKPYGSIRRYGEADVTRVRF 56
Query 62 IKVAQLVGISLEELKQ 77
+K AQ +G SL+E+ +
Sbjct 57 VKSAQRLGFSLDEIAE 72
>P0A184 Mercuric resistance operon regulatory protein [Pseudomonas
fluorescens]
Length=144
Score = 52.4 bits (124), Expect = 1e-12
Identities = 32/76 (42%), Positives = 47/76 (62%), Gaps = 6/76 (8%)
Query 3 QSNQENLGQQFITIGELAKRSGVSVPTIRFYEAKQLIWS-IRTNGNQRRYLRAMLRRIAI 61
++N ENL TIG AK +GV+V TIRFY+ K L+ + G+ RRY A + R+
Sbjct 2 ENNLENL-----TIGVFAKAAGVNVETIRFYQRKGLLLEPDKPYGSIRRYGEADVTRVRF 56
Query 62 IKVAQLVGISLEELKQ 77
+K AQ +G SL+E+ +
Sbjct 57 VKSAQRLGFSLDEIAE 72
>P0A183 Mercuric resistance operon regulatory protein [Pseudomonas
aeruginosa]
Length=144
Score = 52.4 bits (124), Expect = 1e-12
Identities = 32/76 (42%), Positives = 47/76 (62%), Gaps = 6/76 (8%)
Query 3 QSNQENLGQQFITIGELAKRSGVSVPTIRFYEAKQLIWS-IRTNGNQRRYLRAMLRRIAI 61
++N ENL TIG AK +GV+V TIRFY+ K L+ + G+ RRY A + R+
Sbjct 2 ENNLENL-----TIGVFAKAAGVNVETIRFYQRKGLLLEPDKPYGSIRRYGEADVTRVRF 56
Query 62 IKVAQLVGISLEELKQ 77
+K AQ +G SL+E+ +
Sbjct 57 VKSAQRLGFSLDEIAE 72
>P0A2Q8 Mercuric resistance operon regulatory protein [Salmonella
typhi]
Length=144
Score = 51.2 bits (121), Expect = 3e-12
Identities = 32/76 (42%), Positives = 47/76 (62%), Gaps = 6/76 (8%)
Query 3 QSNQENLGQQFITIGELAKRSGVSVPTIRFYEAKQLIWS-IRTNGNQRRYLRAMLRRIAI 61
++N ENL TIG AK +GV+V TIRFY+ K L+ + G+ RRY A + R+
Sbjct 2 ENNLENL-----TIGVFAKAAGVNVETIRFYQRKGLLREPDKPYGSIRRYGEADVVRVKF 56
Query 62 IKVAQLVGISLEELKQ 77
+K AQ +G SL+E+ +
Sbjct 57 VKSAQRLGFSLDEIAE 72
Score = 16.2 bits (30), Expect = 4.9
Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)
Query 134 LRNPDDHYAS 143
LR PD Y S
Sbjct 33 LREPDKPYGS 42
>P0A2Q9 Mercuric resistance operon regulatory protein [Shigella
flexneri]
Length=144
Score = 51.2 bits (121), Expect = 3e-12
Identities = 32/76 (42%), Positives = 47/76 (62%), Gaps = 6/76 (8%)
Query 3 QSNQENLGQQFITIGELAKRSGVSVPTIRFYEAKQLIWS-IRTNGNQRRYLRAMLRRIAI 61
++N ENL TIG AK +GV+V TIRFY+ K L+ + G+ RRY A + R+
Sbjct 2 ENNLENL-----TIGVFAKAAGVNVETIRFYQRKGLLREPDKPYGSIRRYGEADVVRVKF 56
Query 62 IKVAQLVGISLEELKQ 77
+K AQ +G SL+E+ +
Sbjct 57 VKSAQRLGFSLDEIAE 72
Score = 16.2 bits (30), Expect = 4.9
Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)
Query 134 LRNPDDHYAS 143
LR PD Y S
Sbjct 33 LREPDKPYGS 42
>P13111 Mercuric resistance operon regulatory protein [Serratia
marcescens]
Length=144
Score = 51.2 bits (121), Expect = 3e-12
Identities = 32/76 (42%), Positives = 46/76 (61%), Gaps = 6/76 (8%)
Query 3 QSNQENLGQQFITIGELAKRSGVSVPTIRFYEAKQLI-WSIRTNGNQRRYLRAMLRRIAI 61
+ N ENL TIG AK +GV+V TIRFY+ K L+ + G+ RRY A + R+
Sbjct 2 EKNLENL-----TIGVFAKAAGVNVETIRFYQRKGLLPEPDKPYGSIRRYGEADVTRVRF 56
Query 62 IKVAQLVGISLEELKQ 77
+K AQ +G SL+E+ +
Sbjct 57 VKSAQRLGFSLDEIAE 72
>Q9HV30 Uncharacterized HTH-type transcriptional regulator PA4778
[Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 /
CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=132
Score = 50.8 bits (120), Expect = 3e-12
Identities = 34/106 (32%), Positives = 61/106 (58%), Gaps = 2/106 (2%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIWSI-RTNGNQRRYLRAMLRRIAIIKVAQLVGISL 72
+ IGE AK+SG++ IR+YE+ +L+ R+ R Y L +A I+ ++ +G SL
Sbjct 1 MNIGEAAKKSGLTPKMIRYYESIELLRPAGRSASGYRHYNENDLHTLAFIRRSRDLGFSL 60
Query 73 EELKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQL 118
+E+ + ++ DR+ AS D + ++ +L++KI+ L LR L
Sbjct 61 DEVGKLLTLWQDRQRAS-ADVKALAAQHVRELNRKIEELSTLRDTL 105
>P45277 HTH-type transcriptional regulator ZntR homolog [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=135
Score = 50.4 bits (119), Expect = 4e-12
Identities = 38/107 (36%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query 16 IGELAKRSGVSVPTIRFYEAKQLI-WSIRTNGNQRRYLRAMLRRIAIIKVAQLVGISLEE 74
IG LAK G +V TIR+YE + LI RT+GN R+Y L+R++ I + + ISL E
Sbjct 3 IGALAKALGCTVETIRYYEQQGLIPPPKRTSGNFRQYNEEHLQRLSFICNCRNLDISLSE 62
Query 75 LKQAFSVLPDRKMASKQDWEKMSNLWKNQLDK---KIQTLLQLRQQL 118
+K ++ + ASKQ E+++ + + + +I L LR +L
Sbjct 63 IKSLLNL----ENASKQQAEEINRVLDKHIKEVATRIHELAHLRMKL 105
>Q93CH6 HTH-type transcriptional regulator CueR [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=138
Score = 48.9 bits (115), Expect = 2e-11
Identities = 31/110 (28%), Positives = 60/110 (55%), Gaps = 10/110 (9%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIW-SIRTNGNQRRYLRAMLRRIAIIKVAQLVGISL 72
+ I ++AK++G++ IRFYE K L+ +R+ R Y + L + +++ A+ VG +L
Sbjct 1 MNISDVAKKTGLTSKAIRFYEEKGLVTPPLRSENGYRTYTQKHLNELTLLRQARQVGFNL 60
Query 73 EELKQAFSVLPDRKMAS----KQDWEKMSNLWKNQLDKKIQTLLQLRQQL 118
EE + ++ D + S K+ EK++ ++++ I L +R QL
Sbjct 61 EECGELVNLFNDPRRHSADVKKRTLEKVA-----EIERHISELQSMRDQL 105
>P22853 Mercuric resistance operon regulatory protein [Bacillus
cereus]
Length=132
Score = 48.1 bits (113), Expect = 3e-11
Identities = 35/104 (34%), Positives = 54/104 (52%), Gaps = 2/104 (2%)
Query 16 IGELAKRSGVSVPTIRFYEAKQLI-WSIRTNGNQRRYLRAMLRRIAIIKVAQLVGISLEE 74
IGELA + GV+ TIR+YE LI RT R Y + + R+ IK Q +G +L E
Sbjct 5 IGELADKCGVNKETIRYYERLGLIPEPERTEKGYRMYSQQTVDRLHFIKRMQELGFTLNE 64
Query 75 LKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQL 118
+ + V+ DR A +D + L + +KI+ L ++ + L
Sbjct 65 IDKLLGVV-DRDEAKCRDMYDFTILKIEDIQRKIEDLKRIERML 107
>P0A9G4 HTH-type transcriptional regulator CueR [Escherichia coli
(strain K12)]
Length=135
Score = 45.4 bits (106), Expect = 3e-10
Identities = 30/110 (27%), Positives = 60/110 (55%), Gaps = 10/110 (9%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIW-SIRTNGNQRRYLRAMLRRIAIIKVAQLVGISL 72
+ I ++AK +G++ IRFYE K L+ +R+ R Y + L + +++ A+ VG +L
Sbjct 1 MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL 60
Query 73 EELKQAFSVLPDRKMAS----KQDWEKMSNLWKNQLDKKIQTLLQLRQQL 118
EE + ++ D + S ++ EK++ ++++ I+ L +R QL
Sbjct 61 EESGELVNLFNDPQRHSADVKRRTLEKVA-----EIERHIEELQSMRDQL 105
>Q8XD09 HTH-type transcriptional regulator CueR [Escherichia coli
O157:H7]
Length=135
Score = 45.4 bits (106), Expect = 3e-10
Identities = 30/110 (27%), Positives = 60/110 (55%), Gaps = 10/110 (9%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIW-SIRTNGNQRRYLRAMLRRIAIIKVAQLVGISL 72
+ I ++AK +G++ IRFYE K L+ +R+ R Y + L + +++ A+ VG +L
Sbjct 1 MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL 60
Query 73 EELKQAFSVLPDRKMAS----KQDWEKMSNLWKNQLDKKIQTLLQLRQQL 118
EE + ++ D + S ++ EK++ ++++ I+ L +R QL
Sbjct 61 EESGELVNLFNDPQRHSADVKRRTLEKVA-----EIERHIEELQSMRNQL 105
>Q9X5X4 HTH-type transcriptional regulator HmrR [Sinorhizobium
medicae (strain WSM419)]
Length=147
Score = 45.4 bits (106), Expect = 4e-10
Identities = 33/106 (31%), Positives = 59/106 (56%), Gaps = 2/106 (2%)
Query 14 ITIGELAKRSGVSVPTIRFYEAKQLIW-SIRTNGNQRRYLRAMLRRIAIIKVAQLVGISL 72
+ IGE +K SGVS IR+YE LI ++RT + R Y + + I+ A+ +G S+
Sbjct 1 MNIGEASKVSGVSSKMIRYYEQIGLISPAVRTASSYRTYGDNDVHTLRFIRRARDLGFSV 60
Query 73 EELKQAFSVLPDRKMASKQDWEKMSNLWKNQLDKKIQTLLQLRQQL 118
E++K+ ++ DR AS D + ++ +L++KI + + + L
Sbjct 61 EQIKELLALWRDRSRAS-SDVKAVALEHIAELERKIAAIQDMTRTL 105
Lambda K H a alpha
0.324 0.136 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 313344
Database: bca30fd324263b316d56f61f93aa6f04.SwissProt.fasta
Posted date: May 20, 2024 9:38 PM
Number of letters in database: 3,299
Number of sequences in database: 23
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
