BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: f912615a49b5ca733b6a35bae2e83c4c.SwissProt.fasta
17 sequences; 3,291 total letters
Query= ACIAD3132
Length=205
Score E
Sequences producing significant alignments: (Bits) Value
Q9XD50 Inner membrane-spanning protein YciB [Vitreoscilla sp. (st... 172 4e-58
Q885M2 Inner membrane-spanning protein YciB [Pseudomonas syringae... 123 7e-39
C3JYP5 Inner membrane-spanning protein YciB [Pseudomonas fluoresc... 122 9e-39
A6V2M1 Inner membrane-spanning protein YciB [Pseudomonas aerugino... 122 2e-38
Q9HZ39 Inner membrane-spanning protein YciB [Pseudomonas aerugino... 121 2e-38
Q02Q08 Inner membrane-spanning protein YciB [Pseudomonas aerugino... 121 2e-38
B7V8H0 Inner membrane-spanning protein YciB [Pseudomonas aerugino... 121 2e-38
Q48FZ3 Inner membrane-spanning protein YciB [Pseudomonas savastan... 121 4e-38
C1DRP0 Inner membrane-spanning protein YciB [Azotobacter vineland... 119 3e-37
Q4KGB1 Inner membrane-spanning protein YciB [Pseudomonas fluoresc... 116 2e-36
Q3KG77 Inner membrane-spanning protein YciB [Pseudomonas fluoresc... 115 7e-36
P59364 Inner membrane-spanning protein YciB [Pseudomonas putida (... 114 3e-35
A5W0A9 Inner membrane-spanning protein YciB [Pseudomonas putida (... 114 3e-35
P95745 Inner membrane-spanning protein YciB [Shigella flexneri] 99.0 1e-29
P0A710 Inner membrane-spanning protein YciB [Escherichia coli (st... 98.6 1e-29
P42397 Inner membrane-spanning protein YciB [Buchnera aphidicola ... 70.9 5e-19
P30961 Inner membrane-spanning protein YciB [Bradyrhizobium diazo... 58.5 3e-14
>Q9XD50 Inner membrane-spanning protein YciB [Vitreoscilla sp.
(strain C1)]
Length=193
Score = 172 bits (435), Expect = 4e-58
Identities = 81/196 (41%), Positives = 127/196 (65%), Gaps = 19/196 (10%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYTGGSNNNEVLVATTGLIISMIVIYG 60
+K LD++P+I+F+Y+ KT + + S H ++ ATTGL+I+ +++YG
Sbjct 9 IKPFLDWIPLIVFFYIYKTTEGEGSEH----------------IIAATTGLLIATLIVYG 52
Query 61 GLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPYFGK 120
+F+ QKF LEK+QW++++LT+V GG+T+A +DD YI+LKA ++N FA +SP F
Sbjct 53 LMFVLQKFTLEKRQWLVVVLTVVFGGLTMAFQDDFYIRLKAPIINAVFAFGLAMSPLF-L 111
Query 121 DKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTAFGD 180
P IQ++ P+ E+T W LN++W F +M++L FAF++++ YW FTAFGD
Sbjct 112 GGTPGIQKMLGPIFEMTPKQWMKLNWVWVGFFTLMAVLQALFAFVWVE--YWAMFTAFGD 169
Query 181 MIVMFSFIIIQFIVLR 196
MIVM F++ QF LR
Sbjct 170 MIVMVVFMVAQFWFLR 185
>Q885M2 Inner membrane-spanning protein YciB [Pseudomonas syringae
pv. tomato (strain ATCC BAA-871 / DC3000)]
Length=198
Score = 123 bits (308), Expect = 7e-39
Identities = 72/200 (36%), Positives = 115/200 (58%), Gaps = 17/200 (9%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIG--YTGGSNNNEVLVATTGLIISMIVI 58
MK +DF+P+++F+ + KT +P+ + ++G YT G + AT LIIS +V+
Sbjct 1 MKQFIDFIPLLLFFIVYKT-EPR-----AVDILGNSYTFGG----IFSATAMLIISSVVV 50
Query 59 YGGLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPYF 118
YG L+I Q+ KLEK QW+ L+ +V G +TLA +T++K KA ++N FA AF S +
Sbjct 51 YGILYIKQR-KLEKSQWLTLVACLVFGSLTLAFHSETFLKWKAPVVNWLFAVAFAGSHFI 109
Query 119 GKDKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTAF 178
G +PLIQR+ L L A+ W LN W + F+ + + AF + + +W +F F
Sbjct 110 G--DRPLIQRIMGHALTLPAAIWTRLNIAWIIFFLFCGAANLYVAFTYQE--FWVDFKVF 165
Query 179 GDMIVMFSFIIIQFIVLRKH 198
G + + F++ Q I L +H
Sbjct 166 GSLGMTLIFLVGQGIYLSRH 185
>C3JYP5 Inner membrane-spanning protein YciB [Pseudomonas fluorescens
(strain SBW25)]
Length=198
Score = 122 bits (307), Expect = 9e-39
Identities = 74/206 (36%), Positives = 113/206 (55%), Gaps = 19/206 (9%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYT---GGSNNNEVLVATTGLIISMIV 57
MK +DF+P+++F+ + K +DP+ ++ L G+ GG + AT LIIS +V
Sbjct 1 MKQFIDFIPLLLFFIVYK-LDPR-----VIDLAGHELTFGG-----IYSATAVLIISSVV 49
Query 58 IYGGLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPY 117
+YG +FI Q+ KLEK QW+ L+ +V G +TLA +T++K KA ++N FA AF+ S +
Sbjct 50 VYGAIFISQR-KLEKSQWLTLVACLVFGSLTLAFHSETFLKWKAPVVNWLFALAFIGSHF 108
Query 118 FGKDKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTA 177
G + LI+R+ L L W LN W V F+ + F AF F YW +F
Sbjct 109 IG--DRLLIKRIMGHALTLPEPVWTRLNVAWIVFFLFCGAANLFVAFTFQD--YWVDFKV 164
Query 178 FGDMIVMFSFIIIQFIVLRKHFKSPD 203
FG + + F++ Q I L +H D
Sbjct 165 FGSLGMTVLFLVAQGIYLSRHLHDAD 190
>A6V2M1 Inner membrane-spanning protein YciB [Pseudomonas aeruginosa
(strain PA7)]
Length=195
Score = 122 bits (305), Expect = 2e-38
Identities = 70/203 (34%), Positives = 109/203 (54%), Gaps = 15/203 (7%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYTGGSNNNEVLVATTGLIISMIVIYG 60
MK +DF+P+++F+ + K +DP++ L G G AT LI++ +++YG
Sbjct 1 MKQFIDFIPLVLFFIVYK-IDPQNVEFAGFNLSGIYG---------ATATLILASVIVYG 50
Query 61 GLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPYFGK 120
L++ + LEK QW L +VLGG+TLA +DT++K KA L+N FA AF S + G
Sbjct 51 ALWLKHRH-LEKSQWFTLGACLVLGGLTLAFHEDTFLKWKAPLVNWLFALAFAGSHFIG- 108
Query 121 DKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTAFGD 180
KP+IQR+ ++L W LN W V F+V + + F + +W +F FG
Sbjct 109 -DKPMIQRIMGHAIQLPQGLWVRLNIAWVVFFLVCGFANLYVVFTY--PNFWVDFKVFGS 165
Query 181 MIVMFSFIIIQFIVLRKHFKSPD 203
+ + F+I Q I L +H D
Sbjct 166 LGMTLLFLIGQGIFLARHLHDAD 188
>Q9HZ39 Inner membrane-spanning protein YciB [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=195
Score = 121 bits (304), Expect = 2e-38
Identities = 70/203 (34%), Positives = 109/203 (54%), Gaps = 15/203 (7%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYTGGSNNNEVLVATTGLIISMIVIYG 60
MK +DF+P+I+F+ + K +DP++ L G G AT LI++ +++YG
Sbjct 1 MKQFIDFIPLILFFIVYK-IDPQNVEFAGFNLSGIYG---------ATATLILASVIVYG 50
Query 61 GLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPYFGK 120
L++ + LEK QW L +VLGG+TLA +DT++K KA L+N FA AF S + G
Sbjct 51 ALWLKHRH-LEKSQWFTLGACLVLGGLTLAFHEDTFLKWKAPLVNWLFALAFAGSHFIG- 108
Query 121 DKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTAFGD 180
KP+IQR+ ++L W LN W V F+V + + F + +W +F FG
Sbjct 109 -DKPMIQRIMGHAIQLPQGLWVRLNIAWVVFFLVCGFANLYVVFTY--PNFWVDFKVFGS 165
Query 181 MIVMFSFIIIQFIVLRKHFKSPD 203
+ + F+I Q + L +H D
Sbjct 166 LGMTLLFLIGQGLFLARHLHDAD 188
>Q02Q08 Inner membrane-spanning protein YciB [Pseudomonas aeruginosa
(strain UCBPP-PA14)]
Length=195
Score = 121 bits (304), Expect = 2e-38
Identities = 70/203 (34%), Positives = 109/203 (54%), Gaps = 15/203 (7%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYTGGSNNNEVLVATTGLIISMIVIYG 60
MK +DF+P+I+F+ + K +DP++ L G G AT LI++ +++YG
Sbjct 1 MKQFIDFIPLILFFIVYK-IDPQNVEFAGFNLSGIYG---------ATATLILASVIVYG 50
Query 61 GLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPYFGK 120
L++ + LEK QW L +VLGG+TLA +DT++K KA L+N FA AF S + G
Sbjct 51 ALWLKHRH-LEKSQWFTLGACLVLGGLTLAFHEDTFLKWKAPLVNWLFALAFAGSHFIG- 108
Query 121 DKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTAFGD 180
KP+IQR+ ++L W LN W V F+V + + F + +W +F FG
Sbjct 109 -DKPMIQRIMGHAIQLPQGLWVRLNIAWVVFFLVCGFANLYVVFTY--PNFWVDFKVFGS 165
Query 181 MIVMFSFIIIQFIVLRKHFKSPD 203
+ + F+I Q + L +H D
Sbjct 166 LGMTLLFLIGQGLFLARHLHDAD 188
>B7V8H0 Inner membrane-spanning protein YciB [Pseudomonas aeruginosa
(strain LESB58)]
Length=195
Score = 121 bits (304), Expect = 2e-38
Identities = 70/203 (34%), Positives = 109/203 (54%), Gaps = 15/203 (7%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYTGGSNNNEVLVATTGLIISMIVIYG 60
MK +DF+P+I+F+ + K +DP++ L G G AT LI++ +++YG
Sbjct 1 MKQFIDFIPLILFFIVYK-IDPQNVEFAGFNLSGIYG---------ATATLILASVIVYG 50
Query 61 GLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPYFGK 120
L++ + LEK QW L +VLGG+TLA +DT++K KA L+N FA AF S + G
Sbjct 51 ALWLKHRH-LEKSQWFTLGACLVLGGLTLAFHEDTFLKWKAPLVNWLFALAFAGSHFIG- 108
Query 121 DKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTAFGD 180
KP+IQR+ ++L W LN W V F+V + + F + +W +F FG
Sbjct 109 -DKPMIQRIMGHAIQLPQGLWVRLNIAWVVFFLVCGFANLYVVFTY--PNFWVDFKVFGS 165
Query 181 MIVMFSFIIIQFIVLRKHFKSPD 203
+ + F+I Q + L +H D
Sbjct 166 LGMTLLFLIGQGLFLARHLHDAD 188
>Q48FZ3 Inner membrane-spanning protein YciB [Pseudomonas savastanoi
pv. phaseolicola (strain 1448A / Race 6)]
Length=198
Score = 121 bits (303), Expect = 4e-38
Identities = 71/201 (35%), Positives = 115/201 (57%), Gaps = 19/201 (9%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYT---GGSNNNEVLVATTGLIISMIV 57
MK +DF+P+++F+ + KT +P+ + ++G T GG + AT LIIS +V
Sbjct 1 MKQFIDFIPLLLFFIVYKT-EPR-----AVDILGNTYMVGG-----IFSATAMLIISSVV 49
Query 58 IYGGLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPY 117
+YG L++ Q+ KLEK QW+ L+ +V G +TLA +T++K KA ++N FA AF S +
Sbjct 50 VYGILYLKQR-KLEKSQWLTLVACLVFGSLTLAFHSETFLKWKAPVVNWLFAVAFAGSHF 108
Query 118 FGKDKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTA 177
G +P+IQR+ L L A+ W LN W V F+ + + AF + + +W +F
Sbjct 109 IG--DRPIIQRIMGHALTLPAAIWTRLNIAWIVFFLFCGAANLYVAFTYQE--FWVDFKV 164
Query 178 FGDMIVMFSFIIIQFIVLRKH 198
FG + + F++ Q I L +H
Sbjct 165 FGSLGMTLIFLVGQGIYLSRH 185
>C1DRP0 Inner membrane-spanning protein YciB [Azotobacter vinelandii
(strain DJ / ATCC BAA-1303)]
Length=199
Score = 119 bits (297), Expect = 3e-37
Identities = 68/201 (34%), Positives = 115/201 (57%), Gaps = 19/201 (9%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYT---GGSNNNEVLVATTGLIISMIV 57
MK +DF+P+I+F+ + K ++P+ +++L G++ GG + AT LI++ ++
Sbjct 1 MKQFIDFIPLILFFIVYK-LEPR-----IVELAGHSFTFGG-----IFSATAVLILASLL 49
Query 58 IYGGLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPY 117
+YG LF+ Q+ +LEK QWI L+ +V GG+TL + +T++K KA ++N FA F S +
Sbjct 50 VYGTLFLIQR-RLEKGQWITLLACLVFGGMTLTFQSETFLKWKAPVVNWLFALGFAASHF 108
Query 118 FGKDKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTA 177
G +PLIQR+ + L A W LN W F+ + F AF F + +W +F
Sbjct 109 IG--DRPLIQRILGHAVSLPAPLWTRLNLAWVAFFVFSGCANLFVAFTFHE--FWVDFKV 164
Query 178 FGDMIVMFSFIIIQFIVLRKH 198
FG + + F++ Q + L +H
Sbjct 165 FGSLGMTVLFLVGQGVFLARH 185
>Q4KGB1 Inner membrane-spanning protein YciB [Pseudomonas fluorescens
(strain ATCC BAA-477 / NRRL B-23932 / Pf-5)]
Length=198
Score = 116 bits (291), Expect = 2e-36
Identities = 74/206 (36%), Positives = 110/206 (53%), Gaps = 19/206 (9%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYT---GGSNNNEVLVATTGLIISMIV 57
MK +DF+P+ +F+ + K +DP+ ++ L G+ GG + AT LIIS +V
Sbjct 1 MKQFIDFIPLFLFFIVYK-IDPR-----VVDLAGHEVTLGG-----IYSATAVLIISSLV 49
Query 58 IYGGLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPY 117
+YG LFI Q+ KLEK QW+ LI +V G +TLA +T++K KA ++N FA AF+ S +
Sbjct 50 VYGALFISQR-KLEKSQWLTLIACLVFGSLTLAFHSETFLKWKAPVVNWLFALAFIGSHF 108
Query 118 FGKDKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTA 177
G + LI+R+ L L W LN W F+ + F AF F W +F
Sbjct 109 VG--DRLLIKRIMGHALTLPDPVWTRLNIAWIAFFLFCGAANLFVAFTFQ--SIWVDFKV 164
Query 178 FGDMIVMFSFIIIQFIVLRKHFKSPD 203
FG + + F++ Q I L +H D
Sbjct 165 FGSLGMTVLFLVGQGIYLSRHLHDAD 190
>Q3KG77 Inner membrane-spanning protein YciB [Pseudomonas fluorescens
(strain Pf0-1)]
Length=198
Score = 115 bits (288), Expect = 7e-36
Identities = 73/206 (35%), Positives = 110/206 (53%), Gaps = 19/206 (9%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGY---TGGSNNNEVLVATTGLIISMIV 57
MK +DF+P+++F+ + K +DP+ + + G+ GG + AT LIIS +V
Sbjct 1 MKQFIDFIPLLLFFIVYK-LDPRT-----VDVAGHELTVGG-----IYSATAMLIISSLV 49
Query 58 IYGGLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPY 117
+YG LFI Q+ KLEK QW+ LI +V G +TLA +T++K KA ++N FA AF+ S +
Sbjct 50 VYGALFIKQR-KLEKSQWLTLIACLVFGSLTLAFHSETFLKWKAPVVNWLFALAFIGSHF 108
Query 118 FGKDKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTA 177
G + LI+R+ L L W LN W F+ + F AF F W +F
Sbjct 109 IG--DRLLIKRIMGHALTLPDPVWTRLNIAWIAFFLFCGAANLFVAFTFQ--SIWVDFKV 164
Query 178 FGDMIVMFSFIIIQFIVLRKHFKSPD 203
FG + + F++ Q I L +H D
Sbjct 165 FGSLGMTVLFLVGQGIYLSRHLHDAD 190
>P59364 Inner membrane-spanning protein YciB [Pseudomonas putida
(strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 /
KT2440)]
Length=197
Score = 114 bits (284), Expect = 3e-35
Identities = 69/201 (34%), Positives = 110/201 (55%), Gaps = 19/201 (9%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYT---GGSNNNEVLVATTGLIISMIV 57
MK +DF+P+++F+ + K +DP+ +++ G+ GG + AT LIIS +V
Sbjct 1 MKQFIDFIPLLLFFIVYK-LDPRP-----MEVAGHHFEFGG-----IYSATAMLIISSLV 49
Query 58 IYGGLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPY 117
+YG LF+ Q+ KLEK QW+ LI +V GG+TL +T++K KA ++N FA F S +
Sbjct 50 VYGALFLRQR-KLEKGQWLTLIACLVFGGLTLTFHSETFLKWKAPVVNWLFALGFAGSHF 108
Query 118 FGKDKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTA 177
G + LI+R+ L L + W LN W F+ + F AF F +W +F
Sbjct 109 IG--DRVLIKRIMGHALTLPDAIWTRLNLAWIAFFLFCGAANLFVAFTFQD--FWVDFKV 164
Query 178 FGDMIVMFSFIIIQFIVLRKH 198
FG + + F++ Q + L +H
Sbjct 165 FGSLGMTVIFLVAQGVYLSRH 185
>A5W0A9 Inner membrane-spanning protein YciB [Pseudomonas putida
(strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1)]
Length=197
Score = 114 bits (284), Expect = 3e-35
Identities = 69/201 (34%), Positives = 110/201 (55%), Gaps = 19/201 (9%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYT---GGSNNNEVLVATTGLIISMIV 57
MK +DF+P+++F+ + K +DP+ +++ G+ GG + AT LIIS +V
Sbjct 1 MKQFIDFIPLLLFFIVYK-LDPRP-----MEVAGHHFEFGG-----IYSATAMLIISSLV 49
Query 58 IYGGLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPY 117
+YG LF+ Q+ KLEK QW+ LI +V GG+TL +T++K KA ++N FA F S +
Sbjct 50 VYGALFLRQR-KLEKGQWLTLIACLVFGGLTLTFHSETFLKWKAPVVNWLFALGFAGSHF 108
Query 118 FGKDKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTA 177
G + LI+R+ L L + W LN W F+ + F AF F +W +F
Sbjct 109 IG--DRVLIKRIMGHALTLPDAIWTRLNLAWIAFFLFCGAANLFVAFTFQD--FWVDFKV 164
Query 178 FGDMIVMFSFIIIQFIVLRKH 198
FG + + F++ Q + L +H
Sbjct 165 FGSLGMTVIFLVAQGVYLSRH 185
>P95745 Inner membrane-spanning protein YciB [Shigella flexneri]
Length=179
Score = 99.0 bits (245), Expect = 1e-29
Identities = 62/204 (30%), Positives = 97/204 (48%), Gaps = 28/204 (14%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYTGGSNNNEVLVATTGLIISMIVIYG 60
MK LDF+P+++F+ K D + AT LI++ ++
Sbjct 1 MKQFLDFLPLVVFFAFYKIYD----------------------IYAATAALIVATAIVL- 37
Query 61 GLFIYQKF-KLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPYFG 119
++ + +F K+EK I +L +V GG+TL +D +IK K ++ FAGA L+S +
Sbjct 38 -IYSWVRFRKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWV- 95
Query 120 KDKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTAFG 179
KKPLIQR+ L L W LN WAV FI+ L + + AF ++ W F FG
Sbjct 96 -MKKPLIQRMLSKELTLPQPVWSKLNLAWAVFFILCGLANIYIAF-WLPQNIWVNFKVFG 153
Query 180 DMIVMFSFIIIQFIVLRKHFKSPD 203
+ F ++ I + +H D
Sbjct 154 LTALTLIFTLLSGIYIYRHMPQED 177
>P0A710 Inner membrane-spanning protein YciB [Escherichia coli
(strain K12)]
Length=179
Score = 98.6 bits (244), Expect = 1e-29
Identities = 62/204 (30%), Positives = 97/204 (48%), Gaps = 28/204 (14%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYTGGSNNNEVLVATTGLIISMIVIYG 60
MK LDF+P+++F+ K D + AT LI++ ++
Sbjct 1 MKQFLDFLPLVVFFAFYKIYD----------------------IYAATAALIVATAIVL- 37
Query 61 GLFIYQKF-KLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPYFG 119
++ + +F K+EK I +L +V GG+TL +D +IK K ++ FAGA L+S +
Sbjct 38 -IYSWVRFRKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWV- 95
Query 120 KDKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTAFG 179
KKPLIQR+ L L W LN WAV FI+ L + + AF ++ W F FG
Sbjct 96 -MKKPLIQRMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAF-WLPQNIWVNFKVFG 153
Query 180 DMIVMFSFIIIQFIVLRKHFKSPD 203
+ F ++ I + +H D
Sbjct 154 LTALTLIFTLLSGIYIYRHMPQED 177
>P42397 Inner membrane-spanning protein YciB [Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg)]
Length=177
Score = 70.9 bits (172), Expect = 5e-19
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 28/196 (14%)
Query 1 MKALLDFVPIIIFYYLLKTVDPKDSHHPLLQLIGYTGGSNNNEVLVATTGLI-ISMIVIY 59
MK +L+ +PI F+ + D + +A+ LI IS +
Sbjct 1 MKKILNLLPIFTFFIFYRFYD----------------------IFIASKSLIFISGLTCL 38
Query 60 GGLFIYQKFKLEKQQWIILILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPYFG 119
IY++ ++K I + G +T+ + +IK K ++ + F+ +S +F
Sbjct 39 LYWIIYKE--IDKINLFSFITIAIFGSLTIIFHNSQFIKWKITIIYMIFSVILFISQFFM 96
Query 120 KDKKPLIQRLFDPVLELTASGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTAFG 179
K KP+IQR + ++++ WK +N+ WA+ F+ S+L+ + A + + K W F FG
Sbjct 97 K--KPIIQRFLEKDIKISDLYWKKINFFWALFFLFCSILNIYVA-LCLPEKIWVNFKVFG 153
Query 180 DMIVMFSFIIIQFIVL 195
+MF I+I I +
Sbjct 154 LSFLMFLSILITSIYI 169
>P30961 Inner membrane-spanning protein YciB [Bradyrhizobium diazoefficiens
(strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC
14792 / USDA 110)]
Length=200
Score = 58.5 bits (140), Expect = 3e-14
Identities = 35/124 (28%), Positives = 59/124 (48%), Gaps = 4/124 (3%)
Query 79 ILTIVLGGVTLALRDDTYIKLKAVLLNLAFAGAFLLSPYFGKDKKPLIQRLFDPVLELTA 138
++ +V G +TL L D+T+IK+K ++ FA FG+ I +FD + LT
Sbjct 65 VIVLVFGTLTLVLHDETFIKVKPTIIYGLFAAILGGGLLFGRS---FIAVMFDQMFNLTP 121
Query 139 SGWKNLNYIWAVMFIVMSLLHFFFAFIFMQGKYWGEFTAFGDMIVMFSFIIIQFIVLRKH 198
GW+ L WA+ F M++L+ + +W F FG + F I Q + +++
Sbjct 122 QGWRILTLRWALFFAGMAVLN-EIVWRTQSTDFWVNFKVFGVTPITMIFAIAQMPLTKRY 180
Query 199 FKSP 202
P
Sbjct 181 HLEP 184
Lambda K H a alpha
0.335 0.150 0.466 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 436248
Database: f912615a49b5ca733b6a35bae2e83c4c.SwissProt.fasta
Posted date: May 20, 2024 8:46 PM
Number of letters in database: 3,291
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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