BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: b7367d9bdb544aa1739b77f2369ef05f.SwissProt.fasta
4 sequences; 1,501 total letters
Query= ACIAD3162
Length=233
Score E
Sequences producing significant alignments: (Bits) Value
Q1CV68 Probable malate:quinone oxidoreductase [Helicobacter pylor... 35.0 4e-06
B6JPI8 Probable malate:quinone oxidoreductase [Helicobacter pylor... 34.7 5e-06
O24913 Malate:quinone oxidoreductase [Helicobacter pylori (strain... 34.7 5e-06
C4Z281 Flagellar assembly factor FliW [Lachnospira eligens (strai... 33.1 7e-06
>Q1CV68 Probable malate:quinone oxidoreductase [Helicobacter pylori
(strain HPAG1)]
Length=450
Score = 35.0 bits (79), Expect = 4e-06
Identities = 16/41 (39%), Positives = 27/41 (66%), Gaps = 0/41 (0%)
Query 85 VDLKLIQMELNKDVQLIVFEQISDTQVVEAKFKNFFQKIAV 125
+ L+L++M+LNKDV I F+ +SD ++ FKN ++ V
Sbjct 306 ISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPV 346
Score = 24.3 bits (51), Expect = 0.011
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query 24 AEDFIEEEREF-PLSQVFLNATFKRYVTDNVGLLEDLHADLYDDWLRLYA 72
+E+F+EE + P +QVFLN K+ N D +A + +D +YA
Sbjct 171 SENFVEEALKLKPNNQVFLNFKVKKIEKRN-----DTYAVISEDAEEVYA 215
>B6JPI8 Probable malate:quinone oxidoreductase [Helicobacter pylori
(strain P12)]
Length=450
Score = 34.7 bits (78), Expect = 5e-06
Identities = 15/41 (37%), Positives = 27/41 (66%), Gaps = 0/41 (0%)
Query 85 VDLKLIQMELNKDVQLIVFEQISDTQVVEAKFKNFFQKIAV 125
+ L+L++M+LNKDV I F+ +SD ++ FKN ++ +
Sbjct 306 ISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPI 346
Score = 24.3 bits (51), Expect = 0.011
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query 24 AEDFIEEEREF-PLSQVFLNATFKRYVTDNVGLLEDLHADLYDDWLRLYA 72
+E+F+EE + P +QVFLN K+ N D +A + +D +YA
Sbjct 171 SENFVEEALKLRPNNQVFLNFKVKKIEKRN-----DTYAVISEDAEEVYA 215
>O24913 Malate:quinone oxidoreductase [Helicobacter pylori (strain
ATCC 700392 / 26695)]
Length=450
Score = 34.7 bits (78), Expect = 5e-06
Identities = 15/41 (37%), Positives = 27/41 (66%), Gaps = 0/41 (0%)
Query 85 VDLKLIQMELNKDVQLIVFEQISDTQVVEAKFKNFFQKIAV 125
+ L+L++M+LNKDV I F+ +SD ++ FKN ++ +
Sbjct 306 ISLELLKMDLNKDVFKIAFDLMSDKEIRNYVFKNMVFELPI 346
Score = 24.3 bits (51), Expect = 0.011
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query 24 AEDFIEEEREF-PLSQVFLNATFKRYVTDNVGLLEDLHADLYDDWLRLYA 72
+E+F+EE + P +QVFLN K+ N D +A + +D +YA
Sbjct 171 SENFVEEALKLKPNNQVFLNFKVKKIEKRN-----DTYAVISEDAEEVYA 215
>C4Z281 Flagellar assembly factor FliW [Lachnospira eligens (strain
ATCC 27750 / DSM 3376 / VPI C15-48 / C15-B4)]
Length=151
Score = 33.1 bits (74), Expect = 7e-06
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 5/65 (8%)
Query 40 FLNATFKRYVTDNVGLLEDLHADLYDDWLRLYATINVKGLYTKLSVDLK---LIQMELNK 96
F+ T+ V D LL+ L D+ DD +R+Y + V TK++++LK ++ + K
Sbjct 68 FVFETYDPVVEDE--LLKALGDDIQDDNIRVYCALTVPRDITKMTINLKAPIIVDFDTMK 125
Query 97 DVQLI 101
+QLI
Sbjct 126 GIQLI 130
Lambda K H a alpha
0.323 0.138 0.384 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 267329
Database: b7367d9bdb544aa1739b77f2369ef05f.SwissProt.fasta
Posted date: Jun 3, 2024 3:29 AM
Number of letters in database: 1,501
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
