BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 0197ce43495d73bd4616a76d5ea30485.SwissProt.fasta
           19 sequences; 3,552 total letters



Query= ACIAD3572

Length=150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6F6V2 Transcription antitermination protein NusB [Acinetobacter ...  295     3e-108
B0V9X4 Transcription antitermination protein NusB [Acinetobacter ...  274     7e-100
A3MA35 Transcription antitermination protein NusB [Acinetobacter ...  274     7e-100
B2I2B2 Transcription antitermination protein NusB [Acinetobacter ...  274     7e-100
B7I252 Transcription antitermination protein NusB [Acinetobacter ...  274     7e-100
B7GUW2 Transcription antitermination protein NusB [Acinetobacter ...  274     7e-100
B0VPT9 Transcription antitermination protein NusB [Acinetobacter ...  271     5e-99 
Q9HWX6 Transcription antitermination protein NusB [Pseudomonas ae...  152     1e-51 
Q1QUC9 Transcription antitermination protein NusB [Chromohalobact...  147     1e-49 
Q4FPZ1 Transcription antitermination protein NusB [Psychrobacter ...  152     2e-49 
Q1Q833 Transcription antitermination protein NusB [Psychrobacter ...  151     3e-49 
Q4K597 Transcription antitermination protein NusB [Pseudomonas fl...  142     1e-47 
Q0VMI0 Transcription antitermination protein NusB [Alcanivorax bo...  141     2e-47 
Q5QVE5 Transcription antitermination protein NusB [Idiomarina loi...  140     2e-47 
P0A780 Transcription antitermination protein NusB [Escherichia co...  122     6e-40 
Q8G9G3 Transcription antitermination protein NusB [Aliivibrio fis...  114     1e-36 
Q9X286 Transcription antitermination protein NusB [Thermotoga mar...  62.8    8e-17 
P9WIV1 Transcription antitermination protein NusB [Mycobacterium ...  52.0    1e-12 
P94464 Probable ribosomal RNA small subunit methyltransferase B [...  38.9    1e-07 


>Q6F6V2 Transcription antitermination protein NusB [Acinetobacter 
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=149

 Score = 295 bits (755),  Expect = 3e-108
 Identities = 149/149 (100%), Positives = 149/149 (100%), Gaps = 0/149 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
Sbjct  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQAN  149
            GGADSHKYINGVLDRLASRLREAEKQQAN
Sbjct  121  GGADSHKYINGVLDRLASRLREAEKQQAN  149


>B0V9X4 Transcription antitermination protein NusB [Acinetobacter 
baumannii (strain AYE)]
Length=149

 Score = 274 bits (700),  Expect = 7e-100
 Identities = 136/148 (92%), Positives = 141/148 (95%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTR ENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRAENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            V+AQHE LD LL+PVLDRE++ALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
Sbjct  61   VIAQHEDLDALLIPVLDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S LR AEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSTLRSAEKQQA  148


>A3MA35 Transcription antitermination protein NusB [Acinetobacter 
baumannii (strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC 
KC755 / 5377)]
Length=149

 Score = 274 bits (700),  Expect = 7e-100
 Identities = 136/148 (92%), Positives = 141/148 (95%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTR ENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRAENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            V+AQHE LD LL+PVLDRE++ALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
Sbjct  61   VIAQHEDLDALLIPVLDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S LR AEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSTLRSAEKQQA  148


>B2I2B2 Transcription antitermination protein NusB [Acinetobacter 
baumannii (strain ACICU)]
Length=149

 Score = 274 bits (700),  Expect = 7e-100
 Identities = 136/148 (92%), Positives = 141/148 (95%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTR ENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRAENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            V+AQHE LD LL+PVLDRE++ALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
Sbjct  61   VIAQHEDLDALLIPVLDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S LR AEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSTLRSAEKQQA  148


>B7I252 Transcription antitermination protein NusB [Acinetobacter 
baumannii (strain AB0057)]
Length=149

 Score = 274 bits (700),  Expect = 7e-100
 Identities = 136/148 (92%), Positives = 141/148 (95%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTR ENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRAENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            V+AQHE LD LL+PVLDRE++ALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
Sbjct  61   VIAQHEDLDALLIPVLDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S LR AEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSTLRSAEKQQA  148


>B7GUW2 Transcription antitermination protein NusB [Acinetobacter 
baumannii (strain AB307-0294)]
Length=149

 Score = 274 bits (700),  Expect = 7e-100
 Identities = 136/148 (92%), Positives = 141/148 (95%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            MSQTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTR ENAMHKVDL YYHELLTQ
Sbjct  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRAENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            V+AQHE LD LL+PVLDRE++ALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
Sbjct  61   VIAQHEDLDALLIPVLDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S LR AEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSTLRSAEKQQA  148


>B0VPT9 Transcription antitermination protein NusB [Acinetobacter 
baumannii (strain SDF)]
Length=149

 Score = 271 bits (694),  Expect = 5e-99
 Identities = 135/148 (91%), Positives = 140/148 (95%), Gaps = 0/148 (0%)

Query  1    MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ  60
            M QTLQAAYAAKRKARRFAVQGIYEWQMS NPVHEIEARTR ENAMHKVDL YYHELLTQ
Sbjct  1    MYQTLQAAYAAKRKARRFAVQGIYEWQMSHNPVHEIEARTRAENAMHKVDLNYYHELLTQ  60

Query  61   VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120
            V+AQHE LD LL+PVLDRE++ALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
Sbjct  61   VIAQHEDLDALLIPVLDREIDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF  120

Query  121  GGADSHKYINGVLDRLASRLREAEKQQA  148
            GGADSHKYINGVLDRL+S LR AEKQQA
Sbjct  121  GGADSHKYINGVLDRLSSTLRSAEKQQA  148


>Q9HWX6 Transcription antitermination protein NusB [Pseudomonas 
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=159

 Score = 152 bits (384),  Expect = 1e-51
 Identities = 74/135 (55%), Positives = 96/135 (71%), Gaps = 0/135 (0%)

Query  10   AAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQVVAQHETLD  69
            AA+RKAR  AVQ +Y WQ++  P+HEIEA+ R +N   +VD  Y+HE+L  V  Q   LD
Sbjct  19   AARRKARSLAVQALYSWQIAGQPLHEIEAQFRTDNDFSEVDGAYFHEILHGVPRQKSELD  78

Query  70   TLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYI  129
            +   P LDR L  +D VELA LRL  YELR+ +++PY+VV++E IELAK FG  D HK++
Sbjct  79   STFEPCLDRPLAEIDPVELAILRLSTYELRNRIDVPYKVVINEGIELAKTFGATDGHKFV  138

Query  130  NGVLDRLASRLREAE  144
            NGVLD+LA RLR AE
Sbjct  139  NGVLDKLAPRLRAAE  153


>Q1QUC9 Transcription antitermination protein NusB [Chromohalobacter 
salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 
/ NCIMB 13768 / 1H11)]
Length=166

 Score = 147 bits (371),  Expect = 1e-49
 Identities = 81/160 (51%), Positives = 102/160 (64%), Gaps = 16/160 (10%)

Query  1    MSQTLQAAYAA---KRKARRFAVQGIYEWQMSRNPVHEIEARTRVENA---------MHK  48
            MSQT + A  A   +R AR  AVQG+Y+WQM+   +  +E+  R + A          HK
Sbjct  1    MSQTPREATPAQQSRRAARELAVQGLYQWQMTGKSITAVESEFRAQIADEDLEDHENWHK  60

Query  49   V----DLGYYHELLTQVVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEI  104
            V    DL  +HELL  V A  E +D  + P+LDR L  LD +ELA LRLGAYEL+  LE+
Sbjct  61   VMGIADLALFHELLHNVAADREAIDKTIAPLLDRRLEDLDRIELAILRLGAYELKYRLEV  120

Query  105  PYRVVLDEAIELAKHFGGADSHKYINGVLDRLASRLREAE  144
            PYR V++E IELAK FG  D HKY+NG+LD+LASRLR AE
Sbjct  121  PYRAVINEGIELAKAFGATDGHKYVNGILDKLASRLRSAE  160


>Q4FPZ1 Transcription antitermination protein NusB [Psychrobacter 
arcticus (strain DSM 17307 / VKM B-2377 / 273-4)]
Length=375

 Score = 152 bits (385),  Expect = 2e-49
 Identities = 78/152 (51%), Positives = 102/152 (67%), Gaps = 13/152 (9%)

Query  6    QAAYAAKRKARRFAVQGIYEWQMS-------------RNPVHEIEARTRVENAMHKVDLG  52
            + ++ A RKARRFA+QG+YEW ++              N  H+I ARTR  NAMH V +G
Sbjct  45   KTSHTAIRKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIG  104

Query  53   YYHELLTQVVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDE  112
            YYHE++  +  Q + L+TL+   LDRE+N LD VE A L +GAYEL++ LEIPY+VVLDE
Sbjct  105  YYHEMMRDIPEQIDALNTLITQQLDREINKLDTVEHAILLIGAYELQNRLEIPYKVVLDE  164

Query  113  AIELAKHFGGADSHKYINGVLDRLASRLREAE  144
            A++L  HFG  D+HK IN VLDR+A  LR  E
Sbjct  165  AMKLNNHFGATDAHKLINAVLDRMAVELRAPE  196


>Q1Q833 Transcription antitermination protein NusB [Psychrobacter 
cryohalolentis (strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 
/ K5)]
Length=315

 Score = 151 bits (381),  Expect = 3e-49
 Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 13/152 (9%)

Query  6    QAAYAAKRKARRFAVQGIYEWQMS-------------RNPVHEIEARTRVENAMHKVDLG  52
            + ++ A RKARRFA+QG+YEW ++              N  H+I ARTR  NAMH V +G
Sbjct  7    KTSHTAIRKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIG  66

Query  53   YYHELLTQVVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDE  112
            YYHE++  +  Q + LD L+   LDRE+N LD VE A L +GAYEL++ LEIPY+VVLDE
Sbjct  67   YYHEMMRDIPEQIDALDALISQHLDREINKLDTVEHAILLVGAYELQNRLEIPYKVVLDE  126

Query  113  AIELAKHFGGADSHKYINGVLDRLASRLREAE  144
            A++L  HFG  D+HK IN VLDR+A  LR  E
Sbjct  127  AMKLNNHFGATDAHKLINAVLDRMAVELRAPE  158


>Q4K597 Transcription antitermination protein NusB [Pseudomonas 
fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)]
Length=166

 Score = 142 bits (358),  Expect = 1e-47
 Identities = 69/135 (51%), Positives = 96/135 (71%), Gaps = 0/135 (0%)

Query  10   AAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQVVAQHETLD  69
            A +R+AR+ A Q +Y+W M+++ ++EIEA+ RV+N    +D  Y+ E+L  V A    +D
Sbjct  26   AKRREARQLATQALYQWHMAKHSLNEIEAQFRVDNDFTDIDGAYFREILHGVPANKNEID  85

Query  70   TLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYI  129
            T LVP LD  ++ LD VELA LRL  +EL   +++PYRVV++E IELAK FG  D HK++
Sbjct  86   TALVPCLDLAIDELDPVELAVLRLSTWELLKRVDVPYRVVINEGIELAKVFGSTDGHKFV  145

Query  130  NGVLDRLASRLREAE  144
            NGVLD+LA RLREAE
Sbjct  146  NGVLDKLAPRLREAE  160


>Q0VMI0 Transcription antitermination protein NusB [Alcanivorax 
borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 
/ SK2)]
Length=150

 Score = 141 bits (355),  Expect = 2e-47
 Identities = 71/138 (51%), Positives = 96/138 (70%), Gaps = 0/138 (0%)

Query  10   AAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQVVAQHETLD  69
            +A+RKARRF +Q +Y+WQ++   V +IEA+        KVD  Y+H+LL  V+ Q +TLD
Sbjct  8    SARRKARRFTLQALYQWQLAGAAVSDIEAQFLANQDFAKVDREYFHDLLHGVLGQVKTLD  67

Query  70   TLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYI  129
              L P LDR +  L  VE A LRLGA+EL++  ++PYRVV++E IELAK FG  DS KY+
Sbjct  68   EQLTPYLDRRVEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAKVFGAEDSFKYV  127

Query  130  NGVLDRLASRLREAEKQQ  147
            NGVLD+LA +LR AE  +
Sbjct  128  NGVLDKLARQLRYAEASE  145


>Q5QVE5 Transcription antitermination protein NusB [Idiomarina 
loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)]
Length=139

 Score = 140 bits (354),  Expect = 2e-47
 Identities = 68/132 (52%), Positives = 92/132 (70%), Gaps = 0/132 (0%)

Query  10   AAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQVVAQHETLD  69
            AA+RKAR+ AVQ IY WQ+S+N   +IEA+   EN   KVD+ Y+ EL+  V   + TLD
Sbjct  4    AARRKARKLAVQAIYSWQLSQNSFSDIEAQFLTENDTSKVDVDYFLELVRGVGGHYRTLD  63

Query  70   TLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYI  129
              L P LDR +  LD +ELA LRL AYELR+ +++PY+V ++EAIELAK FG  +SH+++
Sbjct  64   EALEPFLDRPIKELDPIELAVLRLAAYELRERVDVPYKVAINEAIELAKSFGADESHRFV  123

Query  130  NGVLDRLASRLR  141
            NGVLD+     R
Sbjct  124  NGVLDKAVDTFR  135


>P0A780 Transcription antitermination protein NusB [Escherichia 
coli (strain K12)]
Length=139

 Score = 122 bits (305),  Expect = 6e-40
 Identities = 62/136 (46%), Positives = 86/136 (63%), Gaps = 0/136 (0%)

Query  10   AAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQVVAQHETLD  69
            AA+R+AR  AVQ +Y WQ+S+N + ++E +   E  +  VD+ Y+ ELL  V      LD
Sbjct  4    AARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRELLAGVATNTAYLD  63

Query  70   TLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYI  129
             L+ P L R L  L  VE A LR+  YEL    ++PY+V ++EAIELAK FG  DSHK++
Sbjct  64   GLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFV  123

Query  130  NGVLDRLASRLREAEK  145
            NGVLD+ A  +R  +K
Sbjct  124  NGVLDKAAPVIRPNKK  139


>Q8G9G3 Transcription antitermination protein NusB [Aliivibrio 
fischeri]
Length=155

 Score = 114 bits (285),  Expect = 1e-36
 Identities = 63/147 (43%), Positives = 88/147 (60%), Gaps = 14/147 (10%)

Query  10   AAKRKARRFAVQGIYEWQMSRNPVHEIE-----ARTRVENAMH---------KVDLGYYH  55
            AA+R AR+FA+Q IY WQ+S+  V +IE     A    E   H         + D+ Y+ 
Sbjct  8    AARRNARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPETDVAYFR  67

Query  56   ELLTQVVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIE  115
            +L + V   H  LD  + P L R L  LD +ELA LR+  YE+ +  ++PY+VV++EAIE
Sbjct  68   DLFSGVALNHMKLDGKMRPYLSRPLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIE  127

Query  116  LAKHFGGADSHKYINGVLDRLASRLRE  142
            LAK F   DSHK++NGVLD+ A  LR+
Sbjct  128  LAKVFAAEDSHKFVNGVLDKAAPTLRK  154


>Q9X286 Transcription antitermination protein NusB [Thermotoga 
maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 
/ MSB8)]
Length=142

 Score = 62.8 bits (151),  Expect = 8e-17
 Identities = 34/79 (43%), Positives = 48/79 (61%), Gaps = 1/79 (1%)

Query  68   LDTLLVPVLDR-ELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSH  126
            +D L+   L++  LN L  V+   LRL  YEL    +IP  V +DEAIE+AK +G  +S 
Sbjct  61   IDDLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSG  120

Query  127  KYINGVLDRLASRLREAEK  145
            K++NG+LDR+A      EK
Sbjct  121  KFVNGILDRIAKEHAPKEK  139


>P9WIV1 Transcription antitermination protein NusB [Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=156

 Score = 52.0 bits (123),  Expect = 1e-12
 Identities = 41/130 (32%), Positives = 67/130 (52%), Gaps = 6/130 (5%)

Query  12   KRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQV---VAQHET-  67
            + +AR+ AV  ++E ++      E+   TR   A  K D+   H     V   V++H   
Sbjct  10   RHQARKRAVALLFEAEVRGISAAEV-VDTRAALAEAKPDIARLHPYTAAVARGVSEHAAH  68

Query  68   LDTLLVPVLDR-ELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSH  126
            +D L+   L    L+ L  V+ A LR+  +EL    ++P  VV+DEA++LAK     DS 
Sbjct  69   IDDLITAHLRGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSP  128

Query  127  KYINGVLDRL  136
             ++NGVL ++
Sbjct  129  GFVNGVLGQV  138


>P94464 Probable ribosomal RNA small subunit methyltransferase 
B [Bacillus subtilis (strain 168)]
Length=447

 Score = 38.9 bits (89),  Expect = 1e-07
 Identities = 29/122 (24%), Positives = 55/122 (45%), Gaps = 1/122 (1%)

Query  12   KRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQVVAQHETLDTL  71
            K   R  A++ + + + ++   + +       N +   + G   EL+   +     LD +
Sbjct  3    KTSVRDIALEALIKLEQNQAYSNLLLKSVIKSNELSDQNRGLLTELVYGTLQNKIALDYM  62

Query  72   LVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYING  131
            L P +++       V +  LRL  Y++    +IP R  + EA+E+AK  G      ++NG
Sbjct  63   LKPFINKPQKVKPWV-IQLLRLSLYQMEYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNG  121

Query  132  VL  133
            VL
Sbjct  122  VL  123



Lambda      K        H        a         alpha
   0.323    0.136    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 321937


  Database: 0197ce43495d73bd4616a76d5ea30485.SwissProt.fasta
    Posted date:  Jun 3, 2024  11:21 AM
  Number of letters in database: 3,552
  Number of sequences in database:  19



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40