BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 34c38f044b52dfffcd3a9f92322c6f55.SwissProt.fasta
4 sequences; 478 total letters
Query= ACIAD3397
Length=190
Score E
Sequences producing significant alignments: (Bits) Value
P64592 Inner membrane protein YhaI [Escherichia coli (strain K12)] 53.5 5e-14
P64593 Inner membrane protein YhaI [Escherichia coli O157:H7] 53.5 5e-14
P64590 Inner membrane protein YhaH [Escherichia coli (strain K12)] 46.6 2e-11
P64591 Inner membrane protein YhaH [Escherichia coli O157:H7] 46.6 2e-11
>P64592 Inner membrane protein YhaI [Escherichia coli (strain
K12)]
Length=118
Score = 53.5 bits (127), Expect = 5e-14
Identities = 30/97 (31%), Positives = 51/97 (53%), Gaps = 11/97 (11%)
Query 30 WSFVSTLAIIGMLL-VISVVFGALASDSNAIQIFGSLLLIAIYVTFLVFSVIFIIRRLHD 88
W F AI+G ++ VI ++ G + L L+A ++ L + IRRLHD
Sbjct 24 WMFTLINAIVGAIINVIQLILGL------ELPYLSMLYLLATFLPVLALA----IRRLHD 73
Query 89 RNHNGWFAILFFIPIINLIFIIYLLCAKGDIETNRFG 125
+ +G +A+LFF+P I + ++ C +G +NR+G
Sbjct 74 TDRSGAWALLFFVPFIGWLVLLVFFCTEGTSGSNRYG 110
>P64593 Inner membrane protein YhaI [Escherichia coli O157:H7]
Length=118
Score = 53.5 bits (127), Expect = 5e-14
Identities = 30/97 (31%), Positives = 51/97 (53%), Gaps = 11/97 (11%)
Query 30 WSFVSTLAIIGMLL-VISVVFGALASDSNAIQIFGSLLLIAIYVTFLVFSVIFIIRRLHD 88
W F AI+G ++ VI ++ G + L L+A ++ L + IRRLHD
Sbjct 24 WMFTLINAIVGAIINVIQLILGL------ELPYLSMLYLLATFLPVLALA----IRRLHD 73
Query 89 RNHNGWFAILFFIPIINLIFIIYLLCAKGDIETNRFG 125
+ +G +A+LFF+P I + ++ C +G +NR+G
Sbjct 74 TDRSGAWALLFFVPFIGWLVLLVFFCTEGTSGSNRYG 110
>P64590 Inner membrane protein YhaH [Escherichia coli (strain
K12)]
Length=121
Score = 46.6 bits (109), Expect = 2e-11
Identities = 32/92 (35%), Positives = 45/92 (49%), Gaps = 4/92 (4%)
Query 43 LVISVVFGALASDSNAIQIFGSLLLIAIYVTFLVFSVIFII--RRLHDRNHNGWFAILFF 100
++ + V G L + G +L IY LVF + + RRLHD + + W+A+LF
Sbjct 31 IIFTFVLGLLDKMLGWQRAGGEGILTTIY-GILVFLPWWAVQFRRLHDTDRSAWWALLFL 89
Query 101 IPIINLIFIIYLLCAKGDIETNRFGA-PRATP 131
IP I + II C G NRFG P+ P
Sbjct 90 IPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP 121
Score = 17.3 bits (33), Expect = 0.33
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
Query 139 WIYIVLMPIVVILGVSSDAMMAYQR 163
W++I++ I + D M+ +QR
Sbjct 24 WMFILVNIIFTFVLGLLDKMLGWQR 48
Score = 14.2 bits (25), Expect = 3.5
Identities = 4/10 (40%), Positives = 7/10 (70%), Gaps = 0/10 (0%)
Query 103 IINLIFIIYL 112
++N+IF L
Sbjct 28 LVNIIFTFVL 37
>P64591 Inner membrane protein YhaH [Escherichia coli O157:H7]
Length=121
Score = 46.6 bits (109), Expect = 2e-11
Identities = 32/92 (35%), Positives = 45/92 (49%), Gaps = 4/92 (4%)
Query 43 LVISVVFGALASDSNAIQIFGSLLLIAIYVTFLVFSVIFII--RRLHDRNHNGWFAILFF 100
++ + V G L + G +L IY LVF + + RRLHD + + W+A+LF
Sbjct 31 IIFTFVLGLLDKMLGWQRAGGEGILTTIY-GILVFLPWWAVQFRRLHDTDRSAWWALLFL 89
Query 101 IPIINLIFIIYLLCAKGDIETNRFGA-PRATP 131
IP I + II C G NRFG P+ P
Sbjct 90 IPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP 121
Score = 17.3 bits (33), Expect = 0.33
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
Query 139 WIYIVLMPIVVILGVSSDAMMAYQR 163
W++I++ I + D M+ +QR
Sbjct 24 WMFILVNIIFTFVLGLLDKMLGWQR 48
Score = 14.2 bits (25), Expect = 3.5
Identities = 4/10 (40%), Positives = 7/10 (70%), Gaps = 0/10 (0%)
Query 103 IINLIFIIYL 112
++N+IF L
Sbjct 28 LVNIIFTFVL 37
Lambda K H a alpha
0.333 0.144 0.447 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 62370
Database: 34c38f044b52dfffcd3a9f92322c6f55.SwissProt.fasta
Posted date: May 20, 2024 10:32 PM
Number of letters in database: 478
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
