BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 710d2e326c109c1bb7c0da8c49bb5e65.SwissProt.fasta
           5 sequences; 541 total letters



Query= ACIAD3264

Length=90
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

O34719 Uncharacterized membrane protein YvlC [Bacillus subtilis (...  62.4    4e-19
P0AFN5 Phage shock protein C [Shigella flexneri]                      33.5    2e-07
P0AFN3 Phage shock protein C [Escherichia coli O6:H1 (strain CFT0...  33.5    2e-07
P0AFN4 Phage shock protein C [Escherichia coli O157:H7]               33.5    2e-07
P0AFN2 Phage shock protein C [Escherichia coli (strain K12)]          33.5    2e-07


>O34719 Uncharacterized membrane protein YvlC [Bacillus subtilis 
(strain 168)]
Length=65

 Score = 62.4 bits (150),  Expect = 4e-19
 Identities = 26/56 (46%), Positives = 43/56 (77%), Gaps = 0/56 (0%)

Query  6   LYRSNRQHIIAGVMGGIAERFGWNANLLRLIFVVVSVMSAAFPGILVYLILWLVIP  61
           LYRS +   IAGV+GG+AE F W+A+LLR+I V++++M++  P +L+Y+I   ++P
Sbjct  4   LYRSEKNKKIAGVIGGLAEYFNWDASLLRVITVILAIMTSVLPVLLIYIIWIFIVP  59


>P0AFN5 Phage shock protein C [Shigella flexneri]
Length=119

 Score = 33.5 bits (75),  Expect = 2e-07
 Identities = 18/67 (27%), Positives = 32/67 (48%), Gaps = 0/67 (0%)

Query  3   NAGLYRSNRQHIIAGVMGGIAERFGWNANLLRLIFVVVSVMSAAFPGILVYLILWLVIPK  62
           N  L+R  +Q ++ GV  GIA  F     L+R++ V+      A   ++ Y+IL   +  
Sbjct  7   NKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLALFTLVAYIILSFALDP  66

Query  63  RPQQLEY  69
            P  + +
Sbjct  67  MPDNMAF  73


>P0AFN3 Phage shock protein C [Escherichia coli O6:H1 (strain 
CFT073 / ATCC 700928 / UPEC)]
Length=119

 Score = 33.5 bits (75),  Expect = 2e-07
 Identities = 18/67 (27%), Positives = 32/67 (48%), Gaps = 0/67 (0%)

Query  3   NAGLYRSNRQHIIAGVMGGIAERFGWNANLLRLIFVVVSVMSAAFPGILVYLILWLVIPK  62
           N  L+R  +Q ++ GV  GIA  F     L+R++ V+      A   ++ Y+IL   +  
Sbjct  7   NKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLALFTLVAYIILSFALDP  66

Query  63  RPQQLEY  69
            P  + +
Sbjct  67  MPDNMAF  73


>P0AFN4 Phage shock protein C [Escherichia coli O157:H7]
Length=119

 Score = 33.5 bits (75),  Expect = 2e-07
 Identities = 18/67 (27%), Positives = 32/67 (48%), Gaps = 0/67 (0%)

Query  3   NAGLYRSNRQHIIAGVMGGIAERFGWNANLLRLIFVVVSVMSAAFPGILVYLILWLVIPK  62
           N  L+R  +Q ++ GV  GIA  F     L+R++ V+      A   ++ Y+IL   +  
Sbjct  7   NKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLALFTLVAYIILSFALDP  66

Query  63  RPQQLEY  69
            P  + +
Sbjct  67  MPDNMAF  73


>P0AFN2 Phage shock protein C [Escherichia coli (strain K12)]
Length=119

 Score = 33.5 bits (75),  Expect = 2e-07
 Identities = 18/67 (27%), Positives = 32/67 (48%), Gaps = 0/67 (0%)

Query  3   NAGLYRSNRQHIIAGVMGGIAERFGWNANLLRLIFVVVSVMSAAFPGILVYLILWLVIPK  62
           N  L+R  +Q ++ GV  GIA  F     L+R++ V+      A   ++ Y+IL   +  
Sbjct  7   NKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLALFTLVAYIILSFALDP  66

Query  63  RPQQLEY  69
            P  + +
Sbjct  67  MPDNMAF  73



Lambda      K        H        a         alpha
   0.334    0.145    0.462    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 30870


  Database: 710d2e326c109c1bb7c0da8c49bb5e65.SwissProt.fasta
    Posted date:  May 20, 2024  11:13 PM
  Number of letters in database: 541
  Number of sequences in database:  5



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40