Comparative Genomics

ACIAD0244 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: c9e51a709b169c1651491522d733ea60.SwissProt.fasta
           13 sequences; 1,455 total letters



Query= ACIAD0244

Length=113
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q52905 Nitrogen regulatory protein P-II [Rhizobium meliloti (stra...  177     3e-63
Q98N18 Nitrogen regulatory protein P-II [Mesorhizobium japonicum ...  174     4e-62
P14179 Nitrogen regulatory protein P-II [Bradyrhizobium diazoeffi...  172     2e-61
P13556 Nitrogen regulatory protein P-II [Rhodobacter capsulatus]      171     1e-60
P21193 Nitrogen regulatory protein P-II [Azospirillum brasilense]     169     4e-60
Q9CJK1 Nitrogen regulatory protein P-II [Pasteurella multocida (s...  169     8e-60
P09827 Nitrogen regulatory protein P-II [Rhizobium leguminosarum ...  168     1e-59
Q53044 Nitrogen regulatory protein P-II [Rhodospirillum rubrum (s...  168     2e-59
P43795 Nitrogen regulatory protein P-II [Haemophilus influenzae (...  166     6e-59
P43519 Nitrogen regulatory protein P-II [Cereibacter sphaeroides]     166     6e-59
P11671 Nitrogen regulatory protein P-II [Klebsiella oxytoca]          166     9e-59
P0AC55 Nitrogen regulatory protein GlnK [Escherichia coli (strain...  166     9e-59
P0A9Z1 Nitrogen regulatory protein P-II 1 [Escherichia coli (stra...  165     2e-58


>Q52905 Nitrogen regulatory protein P-II [Rhizobium meliloti (strain 
1021)]
Length=112

 Score = 177 bits (449),  Expect = 3e-63
 Identities = 83/112 (74%), Positives = 100/112 (89%), Gaps = 0/112 (0%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MK + AI+KPFKLD+V+EAL E+G+QGITVTE KGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct  1    MKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK  60

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            +E+ ++DE  +AVIE+I   A TG+IGDGKIFV+N+E+VIRIRTGETG DA+
Sbjct  61   VEVVLADENAEAVIEAIRNAAQTGRIGDGKIFVSNVEEVIRIRTGETGLDAI  112


>Q98N18 Nitrogen regulatory protein P-II [Mesorhizobium japonicum 
(strain LMG 29417 / CECT 9101 / MAFF 303099)]
Length=112

 Score = 174 bits (442),  Expect = 4e-62
 Identities = 82/112 (73%), Positives = 98/112 (88%), Gaps = 0/112 (0%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MK + AI+KPFKLD+V+EAL E G+QGITVTE KGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct  1    MKKIEAIIKPFKLDEVKEALQEAGLQGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK  60

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            IE+ + D+ V+  IE+I + A TG+IGDGKIFV+N+E+V+RIRTGETG DAV
Sbjct  61   IEVVLGDDAVEGAIEAIRKAAQTGRIGDGKIFVSNIEEVVRIRTGETGMDAV  112


>P14179 Nitrogen regulatory protein P-II [Bradyrhizobium diazoefficiens 
(strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 
14792 / USDA 110)]
Length=112

 Score = 172 bits (437),  Expect = 2e-61
 Identities = 80/112 (71%), Positives = 98/112 (88%), Gaps = 0/112 (0%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MK + AI+KPFKLD+V+EAL E+G+QGITVTE KGFGRQKGH ELYRGAEY+VDFLPKVK
Sbjct  1    MKKIEAIIKPFKLDEVKEALQEVGLQGITVTEAKGFGRQKGHAELYRGAEYIVDFLPKVK  60

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            IEI I D++V+  I++I R A TG+IGDGKIFV+N+E+ IRIRTGE+G DA+
Sbjct  61   IEIVIGDDLVERAIDAIRRAAQTGRIGDGKIFVSNIEEAIRIRTGESGLDAI  112


>P13556 Nitrogen regulatory protein P-II [Rhodobacter capsulatus]
Length=112

 Score = 171 bits (432),  Expect = 1e-60
 Identities = 84/112 (75%), Positives = 96/112 (86%), Gaps = 0/112 (0%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MK V AI+KPFKLD+V+EAL E G+QG++V EVKGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct  1    MKKVEAIIKPFKLDEVKEALQEAGIQGLSVIEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            IE+ + DEMVD  IE+I   A T KIGDGKIFV+++EQ IRIRTGETG DAV
Sbjct  61   IEMVLPDEMVDIAIEAIVGAARTEKIGDGKIFVSSIEQAIRIRTGETGEDAV  112


>P21193 Nitrogen regulatory protein P-II [Azospirillum brasilense]
Length=112

 Score = 169 bits (429),  Expect = 4e-60
 Identities = 79/112 (71%), Positives = 97/112 (87%), Gaps = 0/112 (0%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MK + AI+KPFKLD+V+EAL E+G++GITVTE KGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct  1    MKKIEAIIKPFKLDEVKEALHEVGIKGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK  60

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            IE+ + D +V+  IE+I + A TG+IGDGKIFVT +E+V+RIRTGE G DA+
Sbjct  61   IEVVMEDSLVERAIEAIQQAAHTGRIGDGKIFVTPVEEVVRIRTGEKGGDAI  112


>Q9CJK1 Nitrogen regulatory protein P-II [Pasteurella multocida 
(strain Pm70)]
Length=112

 Score = 169 bits (427),  Expect = 8e-60
 Identities = 80/112 (71%), Positives = 97/112 (87%), Gaps = 0/112 (0%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MK + AI+KPFKLDDVRE+LS++G+ G+TVTEV+GFGRQKGHTELYRGAEY+VDFLPKVK
Sbjct  1    MKKIEAIIKPFKLDDVRESLSDVGITGMTVTEVRGFGRQKGHTELYRGAEYMVDFLPKVK  60

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            +EI ++DE VD  IE+I   A TGKIGDGKIFV ++E+VIRIRTGE   DA+
Sbjct  61   MEIVVTDEQVDQCIEAIMETAQTGKIGDGKIFVYDVERVIRIRTGEENEDAI  112


>P09827 Nitrogen regulatory protein P-II [Rhizobium leguminosarum 
bv. viciae]
Length=111

 Score = 168 bits (425),  Expect = 1e-59
 Identities = 81/112 (72%), Positives = 98/112 (88%), Gaps = 1/112 (1%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MK + AI+KPFKLD+VR   S +G+QGITVTE KGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct  1    MKKIEAIIKPFKLDEVRSP-SGVGLQGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK  59

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            +E+ ++DE  +AVIE+I + A TG+IGDGKIFV+N+E+VIRIRTGETG DA+
Sbjct  60   VEVVLADENAEAVIEAIRKAAQTGRIGDGKIFVSNVEEVIRIRTGETGIDAI  111


>Q53044 Nitrogen regulatory protein P-II [Rhodospirillum rubrum 
(strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 
8255 / S1)]
Length=112

 Score = 168 bits (425),  Expect = 2e-59
 Identities = 81/112 (72%), Positives = 95/112 (85%), Gaps = 0/112 (0%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MK + AI+KPFKLD+V+EAL EIG+QGITVTE KGFGRQKGHTELYRGAEYVVDFLPKVK
Sbjct  1    MKKIEAIIKPFKLDEVKEALHEIGLQGITVTEAKGFGRQKGHTELYRGAEYVVDFLPKVK  60

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            IE+ I D +V+  IE+I + A TG+IGDGKIFV  +E+ IRIRTGE G DA+
Sbjct  61   IELVIEDALVERAIEAIQQAAQTGRIGDGKIFVYAIEEAIRIRTGERGGDAI  112


>P43795 Nitrogen regulatory protein P-II [Haemophilus influenzae 
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=112

 Score = 166 bits (421),  Expect = 6e-59
 Identities = 77/112 (69%), Positives = 96/112 (86%), Gaps = 0/112 (0%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MK + A++KPFKLDDVRE+LS+IG+ G+T+TEV+GFGRQKGHTELYRGAEY+VDFLPKVK
Sbjct  1    MKKIEAMIKPFKLDDVRESLSDIGISGMTITEVRGFGRQKGHTELYRGAEYMVDFLPKVK  60

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            +E+ + DE+VD  IE+I   A TGKIGDGKIFV ++E+ IRIRTGE   DA+
Sbjct  61   LEVVVPDELVDQCIEAIIETAQTGKIGDGKIFVYHVERAIRIRTGEENEDAI  112


>P43519 Nitrogen regulatory protein P-II [Cereibacter sphaeroides]
Length=112

 Score = 166 bits (421),  Expect = 6e-59
 Identities = 79/112 (71%), Positives = 96/112 (86%), Gaps = 0/112 (0%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MK + AI+KPFKLD+V+EAL   GVQG++VTEVKGFGRQKGHTELYRGA YVVDFLPKVK
Sbjct  1    MKKIEAIIKPFKLDEVKEALQAAGVQGLSVTEVKGFGRQKGHTELYRGAAYVVDFLPKVK  60

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            IE+ ++D+MV+A +E+I   + T KIGDGKIF++ +EQ IRIRTGETG DAV
Sbjct  61   IEVVLADDMVEAAVEAIVSASRTDKIGDGKIFISPVEQAIRIRTGETGEDAV  112


>P11671 Nitrogen regulatory protein P-II [Klebsiella oxytoca]
Length=112

 Score = 166 bits (420),  Expect = 9e-59
 Identities = 79/112 (71%), Positives = 97/112 (87%), Gaps = 0/112 (0%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MK + AI+KPFKLDDVREAL+E+G+ G+TVTEVKGFGRQKGHTELYRGAEY+VDFLPKVK
Sbjct  1    MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVK  60

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            IEI ++D++VD  +++I R A TGKIGDGKIFV ++ +VIRIRTGE    A+
Sbjct  61   IEIVVTDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAAI  112


>P0AC55 Nitrogen regulatory protein GlnK [Escherichia coli (strain 
K12)]
Length=112

 Score = 166 bits (420),  Expect = 9e-59
 Identities = 80/112 (71%), Positives = 97/112 (87%), Gaps = 0/112 (0%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MKLVT I+KPFKL+DVREALS IG+QG+TVTEVKGFGRQKGH ELYRGAEY V+FLPKVK
Sbjct  1    MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVK  60

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            I++AI+D+ +D VI+ +++ A TGKIGDGKIFV  L++VIRIRTGE    A+
Sbjct  61   IDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL  112


>P0A9Z1 Nitrogen regulatory protein P-II 1 [Escherichia coli (strain 
K12)]
Length=112

 Score = 165 bits (418),  Expect = 2e-58
 Identities = 79/112 (71%), Positives = 96/112 (86%), Gaps = 0/112 (0%)

Query  1    MKLVTAIVKPFKLDDVREALSEIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKVK  60
            MK + AI+KPFKLDDVREAL+E+G+ G+TVTEVKGFGRQKGHTELYRGAEY+VDFLPKVK
Sbjct  1    MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVK  60

Query  61   IEIAISDEMVDAVIESITRVASTGKIGDGKIFVTNLEQVIRIRTGETGADAV  112
            IEI + D++VD  +++I R A TGKIGDGKIFV ++ +VIRIRTGE    A+
Sbjct  61   IEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRIRTGEEDDAAI  112



Lambda      K        H        a         alpha
   0.323    0.142    0.387    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 92735


  Database: c9e51a709b169c1651491522d733ea60.SwissProt.fasta
    Posted date:  May 20, 2024  9:38 PM
  Number of letters in database: 1,455
  Number of sequences in database:  13



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40