BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 512ff89c3aea75cd5ec51247cdceec9f.SwissProt.fasta
15 sequences; 7,079 total letters
Query= ACIAD0278
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
P02930 Outer membrane protein TolC [Escherichia coli (strain K12)] 178 8e-54
Q54001 Outer membrane protein TolC [Salmonella enteritidis] 177 3e-53
Q9K2Y1 Outer membrane protein TolC [Vibrio cholerae serotype O1 (... 147 7e-43
Q03027 Alkaline protease secretion protein AprF [Pseudomonas aeru... 142 9e-41
P23598 Proteases secretion protein PrtF [Dickeya chrysanthemi] 124 2e-34
P77211 Cation efflux system protein CusC [Escherichia coli (strai... 72.8 5e-17
Q8XBY3 Cation efflux system protein CusC [Escherichia coli O157:H7] 69.3 7e-16
Q8CWA4 Cation efflux system protein CusC [Escherichia coli O6:H1 ... 67.4 3e-15
O31101 Solvent efflux pump outer membrane protein SrpC [Pseudomon... 64.7 2e-14
Q93PU3 Toluene efflux pump outer membrane protein TtgI [Pseudomon... 64.7 2e-14
P0C071 Multidrug/solvent efflux pump outer membrane protein MepC ... 63.9 4e-14
Q88N32 Probable efflux pump outer membrane protein TtgC [Pseudomo... 63.9 4e-14
Q9KJC1 Antibiotic efflux pump outer membrane protein ArpC [Pseudo... 63.9 4e-14
Q9WWZ8 Toluene efflux pump outer membrane protein TtgC [Pseudomon... 62.8 9e-14
Q9ZHD2 Probable outer membrane lipoprotein SilC [Salmonella typhi... 62.0 2e-13
>P02930 Outer membrane protein TolC [Escherichia coli (strain
K12)]
Length=493
Score = 178 bits (452), Expect = 8e-54
Identities = 137/450 (30%), Positives = 217/450 (48%), Gaps = 28/450 (6%)
Query 6 IILVTGLWGCSVPVFALDLVGVYQLAKNNDPALQADQYQFQADQLNLGLATGNLLPTVTL 65
I++ L G S A +L+ VYQ A+ ++P L+ A + A LLP + L
Sbjct 7 ILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGL 66
Query 66 AGNVTRDRQTVKNDQSFELPAFGDASNALVSNTSTKKQVSLTARQPIFRMDAWQGYKQVK 125
+ T + DA N + SN ++ SL Q IF M W+ +
Sbjct 67 GADYTYSN------------GYRDA-NGINSNATS---ASLQLTQSIFDMSKWRALTLQE 110
Query 126 TSVLLSEVTLKIQKQQHILDVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGF 185
+ + +VT + +Q IL+ A AYFNVL + + +++A+ +QLD + G
Sbjct 111 KAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGL 170
Query 186 VAKSDVSEANAQYQNARANRIAGEVQMMLAQEQLNQYIGANSTQNLATLRPDFQFQSPYP 245
VA +DV A AQY AN + + A EQL Q G N LA L + F++ P
Sbjct 171 VAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITG-NYYPELAALNVE-NFKTDKP 228
Query 246 AQLQDWLMLAQTHNLAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQS---PET 302
+ L A+ NL++ QA L + A + R + P L+ A+ G +D S +T
Sbjct 229 QPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTASTGISDTSYSGSKT 288
Query 303 LISTNGQFD-------QIGLELSWNVFNGGQTRTSIKKASILIDKAQSQLDTAKRNASVD 355
+ Q+D ++GL S ++ GG + +K+A A QL++A R+
Sbjct 289 RGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQT 348
Query 356 VKKAFLQLETDQSKLQARKAAMSSAELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDY 415
V+ +F + S + A K A+ SA+ + A Y+ G +T+VDVL A ++AKQ+
Sbjct 349 VRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQEL 408
Query 416 LNAQYDYLVNVLKLKAAVGQLSEQDLAELN 445
NA+Y+YL+N L +K+A+G L+EQDL LN
Sbjct 409 ANARYNYLINQLNIKSALGTLNEQDLLALN 438
>Q54001 Outer membrane protein TolC [Salmonella enteritidis]
Length=491
Score = 177 bits (448), Expect = 3e-53
Identities = 137/458 (30%), Positives = 216/458 (47%), Gaps = 28/458 (6%)
Query 1 MTIKK---IILVTGLWGCSVPVFALDLVGVYQLAKNNDPALQADQYQFQADQLNLGLATG 57
M +KK I++ L G S A +L+ VYQ A+ ++P L+ A + A
Sbjct 1 MQMKKLLPILIGLSLSGFSTLSQAENLMQVYQQARLSNPELRKSAADRDAAFEKINEARS 60
Query 58 NLLPTVTLAGNVTRDRQTVKNDQSFELPAFGDASNALVSNTSTKKQVSLTARQPIFRMDA 117
LLP + L + T + DA+ + TS Q++ Q +F M
Sbjct 61 PLLPQLGLGADYTYSN------------GYRDANGINSNETSASLQLT----QTLFDMSK 104
Query 118 WQGYKQVKTSVLLSEVTLKIQKQQHILDVAEAYFNVLRQQALSAAYLQEEQALLQQLDMM 177
W+G + + + +VT + +Q IL+ A AYF VL + + +++A+ +QLD
Sbjct 105 WRGLTLQEKAAGIQDVTYQTDQQTLILNTANAYFKVLNAIDVLSYTQAQKEAIYRQLDQT 164
Query 178 NAKLKQGFVAKSDVSEANAQYQNARANRIAGEVQMMLAQEQLNQYIGANSTQNLATLRPD 237
+ G VA +DV A AQY AN + + A E+L Q G N LA+L +
Sbjct 165 TQRFNVGLVAITDVQNARAQYDTVLANEVTVRNNLDNAVEELRQVTG-NYYPELASLNVE 223
Query 238 FQFQSPYPAQLQDWLMLAQTHNLAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTD 297
F++ P + L A+ NL++ QA L + A + R + P LN + G +D
Sbjct 224 -HFKTDKPKAVNALLKEAENRNLSLLQARLSQDLAREQIRQAQDGHLPTLNLTPSTGISD 282
Query 298 QSPETLISTNGQFD-------QIGLELSWNVFNGGQTRTSIKKASILIDKAQSQLDTAKR 350
S + Q+D +IGL S ++ GG + +K+A A QL++A R
Sbjct 283 TSYSGSKTNAAQYDDSNMGQNKIGLNFSLPLYQGGMVNSQVKQAQYNFVGASEQLESAHR 342
Query 351 NASVDVKKAFLQLETDQSKLQARKAAMSSAELVSQSSRASYNEGLKTMVDVLLAQRNAFS 410
+ V+ +F + S + A K A+ SA+ + A Y+ G +T+VDVL A +
Sbjct 343 SVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYD 402
Query 411 AKQDYLNAQYDYLVNVLKLKAAVGQLSEQDLAELNAWL 448
AKQ NA+Y YL+N L +K A+G L+EQDL LN+ L
Sbjct 403 AKQQLANARYTYLINQLNIKYALGTLNEQDLLALNSTL 440
>Q9K2Y1 Outer membrane protein TolC [Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=438
Score = 147 bits (372), Expect = 7e-43
Identities = 118/440 (27%), Positives = 201/440 (46%), Gaps = 22/440 (5%)
Query 16 SVPVFALDLVGVYQLAKNNDPALQADQYQFQADQLNLGLATGNLLPTVTLAGNVTRDRQT 75
S V+A +L +Y AK NDP L + Q A + + LLP + L +R
Sbjct 17 SSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGYNINR-- 74
Query 76 VKNDQSFELPAFGDASNALVSNTSTKKQVSLTARQPIFRMDAWQGYKQVKTSVLLSEVTL 135
S + P D +A + Q +++ +W + ++
Sbjct 75 -----SDQAPRESDLLSA-----------GINFSQELYQRSSWVSLDTAEKKARQADSQY 118
Query 136 KIQKQQHILDVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGFVAKSDVSEAN 195
+Q IL VA+AYF VLR Q E+ A+ +QL+ + + G A +DV +A
Sbjct 119 AATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQ 178
Query 196 AQYQNARANRIAGEVQMMLAQEQLNQYIGANSTQNLATLRPDFQFQSPYPAQLQDWLMLA 255
AQ+ A+ + E + + E L + G ++ LA L S + + A
Sbjct 179 AQFDGVLADEVLAENSLTNSYEALREITGQEYSK-LAVLDTKRFAASRTTESSEALIEKA 237
Query 256 QTHNLAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLISTNGQFD---Q 312
Q NL++ A + + A D + + P L Y Y + S + +T+G+ +
Sbjct 238 QQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFK 297
Query 313 IGLELSWNVFNGGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKLQA 372
IG+ L ++ GG T + K+A A L+ A R+ DV+ + L+A
Sbjct 298 IGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRA 357
Query 373 RKAAMSSAELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYLVNVLKLKAA 432
+ A+ SA+ +++ A ++ G +T+VDVL A R + A ++ NA+YDY+++VL+L+ A
Sbjct 358 YEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQA 417
Query 433 VGQLSEQDLAELNAWLMPEK 452
+G LSEQD+ ++NA L K
Sbjct 418 IGTLSEQDVMDVNAGLKVAK 437
>Q03027 Alkaline protease secretion protein AprF [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=481
Score = 142 bits (359), Expect = 9e-41
Identities = 120/460 (26%), Positives = 210/460 (46%), Gaps = 42/460 (9%)
Query 1 MTIKKIILVTGLWGCSV-----PVFALDLVGVYQLAKNNDPALQADQYQFQADQLNLGLA 55
MT+++ L+T L+G + FAL L+ Y LA NDP QA + +A + L
Sbjct 1 MTMRR--LMTWLFGAFLLLLREDAFALGLLDGYHLALENDPQFQAAIQEHEAGRQYRALG 58
Query 56 TGNLLPTVTLAGN---------VTRDRQTVKNDQSFELPAFGDASNALVSNTSTKKQVSL 106
LLP + + N T R K D+ ++ S ST L
Sbjct 59 RAALLPRLVYSYNRGRSWSDVTQTTTRGDFKEDRDYD------------SYVST-----L 101
Query 107 TARQPIFRMDAWQGYKQVKTSVLLSEVTLKIQKQQHILDVAEAYFNVLRQQALSAAYLQE 166
+ +QP+F +A+ Y++ LLS+ + Q Q+ ++ V EAY L Q +
Sbjct 102 SLQQPLFDYEAFSRYRKGVAQALLSDERFRSQSQELLVRVLEAYTGALLAQDQIELARAQ 161
Query 167 EQALLQQLDMMNAKLKQGFVAKSDVSEANAQYQNARANRIAGEVQMMLAQEQLNQYIGAN 226
+++ +Q + + ++G ++D E A++ A+A I A +L + +GA
Sbjct 162 KRSYREQFQLNQRQFERGNGTRTDTLETQARFNLAQAQEIEARDSQDAALRELERLVGAP 221
Query 227 -STQNLATLRPDFQFQSPYPAQLQDWLMLAQTHNLAIQQATLQRQYAEDGRRVE----KA 281
+LA L FQ + PA W LA N + ++A D R E +A
Sbjct 222 LEIADLAPLGERFQVRPLSPASYTAWRDLALAENPELASL----RHAVDVARYEVEQNRA 277
Query 282 ALYPQLNAVATYGYTDQSPETLISTNGQFDQIGLELSWNVFNGGQTRTSIKKASILIDKA 341
P+L A+ G + E + + D +G++LS +F+GG+T + ++A+ ++K+
Sbjct 278 DFLPRLGLYASTGKSKSGSENTYNQRYETDSVGIQLSVPLFSGGETLAATRQATHRMEKS 337
Query 342 QSQLDTAKRNASVDVKKAFLQLETDQSKLQARKAAMSSAELVSQSSRASYNEGLKTMVDV 401
LD R V+K + Q + +K++A + + SA + ++R S G++ +D+
Sbjct 338 HYDLDDKVRETLNQVRKMYNQSSSSAAKIRAYEMTVDSARTLVMATRKSIAAGVRVNLDL 397
Query 402 LLAQRNAFSAKQDYLNAQYDYLVNVLKLKAAVGQLSEQDL 441
L A++ +SA + A+YDYL +L+ G L E DL
Sbjct 398 LNAEQALYSAMNELSKAKYDYLTAWARLRFYAGVLDEADL 437
>P23598 Proteases secretion protein PrtF [Dickeya chrysanthemi]
Length=462
Score = 124 bits (312), Expect = 2e-34
Identities = 104/433 (24%), Positives = 201/433 (46%), Gaps = 18/433 (4%)
Query 21 ALDLVGVYQLAKNNDPALQADQYQFQADQLNLGLATGNLLPTV--TLAGNVTRDRQTVKN 78
A+ L+ ++LA ND L+A ++ A Q + + LLP++ T N + + T +
Sbjct 21 AMGLLDAWELALRNDAQLRAAGFERDAGQEEVAIGRAGLLPSLQYTYGANYSHSKVT-QR 79
Query 79 DQSFELPAFGDASNALVSNTSTKKQVSLTARQPIFRMDAWQGYKQVKTSVLLSEVTLKIQ 138
D++ D N + + LT RQP+ AW Y+Q T L+++ + +
Sbjct 80 DRTLNNTTKRDYDNYVST---------LTLRQPLLDYAAWARYQQGVTRKLMADQRFRDR 130
Query 139 KQQHILDVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGFVAKSDVSEANAQY 198
Q ++ + +++ L Q + +A +QL + L G ++D+ E A+Y
Sbjct 131 SQDLMVRLYQSWSEALLAQEKLMLLDAQRRAYQEQLALNRRLLAAGEGTQTDLRETEARY 190
Query 199 QNARANRIAGEVQMMLAQEQLNQYIGAN-STQNLATLRPD-FQFQSPYPAQLQDWLMLAQ 256
A RI E + A L +G+ Q+L+ L D L W L
Sbjct 191 TVTEAQRIEQEDTLDAAMTDLENMMGSPLQIQDLSPLALDTLPDNVTENRSLSQWRELTV 250
Query 257 THN--LAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLISTNGQFDQIG 314
HN LA+Q+ + E R +A P L+ VA+ + E + +G
Sbjct 251 RHNAKLAVQRENVDYSRYEIERN--RAGHLPTLDLVASTRNSLSESEYNYNQKYDTQTVG 308
Query 315 LELSWNVFNGGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKLQARK 374
L++ +++GG S+++A+ ++Q++LD R ++++ F +K++A +
Sbjct 309 LQVRVPLYSGGAVSASMRQAAAEYQQSQAELDNQTRQTFAELRRQFNLCANGAAKIRAWQ 368
Query 375 AAMSSAELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYLVNVLKLKAAVG 434
++++AE +++R S G + +DVL+A++ ++A+++ +Y +L L L+ G
Sbjct 369 MSVAAAEEAIRATRQSVAGGERINLDVLMAEQEWYNARRELTEVKYRWLQAWLNLRYTAG 428
Query 435 QLSEQDLAELNAW 447
L+EQD+ +L AW
Sbjct 429 TLNEQDMMQLAAW 441
>P77211 Cation efflux system protein CusC [Escherichia coli (strain
K12)]
Length=457
Score = 72.8 bits (177), Expect = 5e-17
Identities = 75/356 (21%), Positives = 155/356 (44%), Gaps = 17/356 (5%)
Query 88 GDASNALVSNTSTKKQVSLTARQPIFRMDAWQGYKQVKTSVLLSEV-TLKIQKQQHIL-- 144
G S L NT+T ++ S T F +D + K + + + + T + Q+ HIL
Sbjct 108 GSWSGNLKGNTATTREFS-TGLNASFDLDFFGRLKNMSEAERQNYLATEEAQRAVHILLV 166
Query 145 -DVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGFVAKSD----VSEANAQYQ 199
+VA++YFN Q L+ A LQ + L+ A +++ + S + +A +
Sbjct 167 SNVAQSYFN----QQLAYAQLQIAEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIE 222
Query 200 NARANRIAGEVQMMLAQEQLNQYIGA-NSTQNLATLRPDFQFQSPYPAQLQDWLMLAQTH 258
+ R++ + ++ A L +G+ T+ D PA L ++L +
Sbjct 223 STRSDIAKRQGELAQANNALQLLLGSYGKLPQAQTVNSDSLQSVKLPAGLSSQILLQRPD 282
Query 259 NLAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLISTNGQFDQIGLELS 318
+ + A + A +AA +P ++ + +L + + ++
Sbjct 283 IMEAEHALMA---ANANIGAARAAFFPSISLTSGISTASSDLSSLFNASSGMWNFIPKIE 339
Query 319 WNVFNGGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKLQARKAAMS 378
+FN G+ + ++ A I ++ + +NA +V A ++ ++ A++ ++
Sbjct 340 IPIFNAGRNQANLDIAEIRQQQSVVNYEQKIQNAFKEVADALALRQSLNDQISAQQRYLA 399
Query 379 SAELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYLVNVLKLKAAVG 434
S ++ Q +RA Y G + ++VL A+R+ F+ +Q L+ Y VN + L A+G
Sbjct 400 SLQITLQRARALYQHGAVSYLEVLDAERSLFATRQTLLDLNYARQVNEISLYTALG 455
Score = 26.2 bits (56), Expect = 0.029
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (10%)
Query 247 QLQDWLMLAQTHNLAIQQATLQRQYAEDGRRVEKAALYPQLNAVAT-------YGYTDQS 299
Q++ + A +N ++ ATL+ Q A R+ A YPQLN + G T +
Sbjct 62 QVKTLISEALVNNRDLRMATLKVQEARAQYRLTDADRYPQLNGEGSGSWSGNLKGNTATT 121
Query 300 PETLISTNGQFD 311
E N FD
Sbjct 122 REFSTGLNASFD 133
Score = 20.8 bits (42), Expect = 1.4
Identities = 7/35 (20%), Positives = 16/35 (46%), Gaps = 0/35 (0%)
Query 36 PALQADQYQFQADQLNLGLATGNLLPTVTLAGNVT 70
P + ++ A N+G A P+++L ++
Sbjct 281 PDIMEAEHALMAANANIGAARAAFFPSISLTSGIS 315
>Q8XBY3 Cation efflux system protein CusC [Escherichia coli O157:H7]
Length=460
Score = 69.3 bits (168), Expect = 7e-16
Identities = 73/356 (21%), Positives = 155/356 (44%), Gaps = 17/356 (5%)
Query 88 GDASNALVSNTSTKKQVSLTARQPIFRMDAWQGYKQVKTSVLLSEV-TLKIQKQQHIL-- 144
G S L +++T ++ S T F +D + K + + + + T + Q+ HIL
Sbjct 108 GSWSGNLKGDSATTREFS-TGLNASFDLDFFGRLKNMSEAERQNYLATEEAQRAVHILLV 166
Query 145 -DVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGFVAKSD----VSEANAQYQ 199
+VA++YFN Q L+ A LQ + L+ A +++ + S + +A +
Sbjct 167 SNVAQSYFN----QQLAYAQLQIAEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIE 222
Query 200 NARANRIAGEVQMMLAQEQLNQYIGA-NSTQNLATLRPDFQFQSPYPAQLQDWLMLAQTH 258
+ R++ + ++ A L +G+ T+ D PA L ++L +
Sbjct 223 STRSDIAKRQGELAQANNALQLLLGSYGKLPQAQTVNSDSLQSVKLPAGLSSQILLQRPD 282
Query 259 NLAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLISTNGQFDQIGLELS 318
+ + A + A +AA +P ++ + +L + + ++
Sbjct 283 IMEAEHALMA---ANANIGAARAAFFPSISLTSGISTASSDLSSLFNASSGMWNFIPKIE 339
Query 319 WNVFNGGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKLQARKAAMS 378
+FN G+ + ++ A I ++ + +NA +V A ++ ++ A++ ++
Sbjct 340 IPIFNAGRNQANLDIAEIRQQQSVVNYEQKIQNAFKEVADALALRQSLNDQISAQQRYLA 399
Query 379 SAELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYLVNVLKLKAAVG 434
S ++ Q +RA Y G + ++VL A+R+ F+ +Q L+ Y VN + L A+G
Sbjct 400 SLQITLQRARALYQHGAVSYLEVLDAERSLFATRQTVLDLNYARQVNEISLYTALG 455
Score = 25.4 bits (54), Expect = 0.051
Identities = 15/42 (36%), Positives = 23/42 (55%), Gaps = 0/42 (0%)
Query 247 QLQDWLMLAQTHNLAIQQATLQRQYAEDGRRVEKAALYPQLN 288
Q++ + A +N ++ ATL+ Q A R+ A YPQLN
Sbjct 62 QVKTLISEALENNRDLRMATLKVQEARAQYRLTDADRYPQLN 103
Score = 20.8 bits (42), Expect = 1.4
Identities = 7/35 (20%), Positives = 16/35 (46%), Gaps = 0/35 (0%)
Query 36 PALQADQYQFQADQLNLGLATGNLLPTVTLAGNVT 70
P + ++ A N+G A P+++L ++
Sbjct 281 PDIMEAEHALMAANANIGAARAAFFPSISLTSGIS 315
>Q8CWA4 Cation efflux system protein CusC [Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC)]
Length=460
Score = 67.4 bits (163), Expect = 3e-15
Identities = 72/356 (20%), Positives = 154/356 (43%), Gaps = 17/356 (5%)
Query 88 GDASNALVSNTSTKKQVSLTARQPIFRMDAWQGYKQVKTSVLLSEV-TLKIQKQQHIL-- 144
G S L +++T ++ S T F +D + K + + + + T + Q+ HIL
Sbjct 108 GSWSGNLKGDSATTREFS-TGLNASFDLDFFGRLKNMSEAERQNYLATEEAQRAVHILLV 166
Query 145 -DVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGFVAKSD----VSEANAQYQ 199
+VA++YFN Q L+ A LQ + L+ A +++ + S + +A +
Sbjct 167 SNVAQSYFN----QQLAYAQLQIAEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIE 222
Query 200 NARANRIAGEVQMMLAQEQLNQYIGA-NSTQNLATLRPDFQFQSPYPAQLQDWLMLAQTH 258
+ R++ + ++ A L +G+ T+ D PA L ++L +
Sbjct 223 STRSDIAKRQGELAQANNALQLLLGSYGKLPQAQTVNSDSLQSVKLPAGLPSQILLQRPD 282
Query 259 NLAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLISTNGQFDQIGLELS 318
+ + A + A +AA +P ++ + +L + + ++
Sbjct 283 IMEAEHALMA---ANANIGAARAAFFPSISLTSGISTASSDLSSLFNASSGMWNFIPKIE 339
Query 319 WNVFNGGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKLQARKAAMS 378
+FN G+ + ++ A I ++ + +NA +V A ++ ++ A++ ++
Sbjct 340 IPIFNAGRNQANLDIAEIRQQQSVVNYEQKIQNAFKEVADALALRQSLNDQISAQQRYLA 399
Query 379 SAELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYLVNVLKLKAAVG 434
S ++ Q +R Y G + ++VL A+R+ F+ +Q L+ Y VN + L A+G
Sbjct 400 SLQITLQRARTLYQHGAVSYLEVLDAERSLFATRQTLLDLNYARQVNEISLYTALG 455
Score = 23.9 bits (50), Expect = 0.15
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 0/42 (0%)
Query 247 QLQDWLMLAQTHNLAIQQATLQRQYAEDGRRVEKAALYPQLN 288
Q++ + A +N ++ A L+ Q A R+ A YPQLN
Sbjct 62 QVKTLISEALVNNRDLRMAALKVQEARAQYRLTDADRYPQLN 103
Score = 20.8 bits (42), Expect = 1.4
Identities = 7/35 (20%), Positives = 16/35 (46%), Gaps = 0/35 (0%)
Query 36 PALQADQYQFQADQLNLGLATGNLLPTVTLAGNVT 70
P + ++ A N+G A P+++L ++
Sbjct 281 PDIMEAEHALMAANANIGAARAAFFPSISLTSGIS 315
>O31101 Solvent efflux pump outer membrane protein SrpC [Pseudomonas
putida]
Length=470
Score = 64.7 bits (156), Expect = 2e-14
Identities = 64/291 (22%), Positives = 122/291 (42%), Gaps = 4/291 (1%)
Query 145 DVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGFVAKSDVSEANAQYQNARAN 204
DVA YF QAL + ++ L M+ + G ++ DV +A A+A
Sbjct 175 DVATTYFLWRTDQALLELTEATLTSYVESLAMIESSAWAGTSSELDVRQARTLVNQAQAQ 234
Query 205 RIAGEVQMMLAQEQLNQYIGANSTQNLATLRP-DFQFQSPYPAQLQDWLMLAQTHNLAIQ 263
+ ++ L +G+ +L P PA L L+L + I+
Sbjct 235 QALYTRRIAQDVNALELLLGSKIPTDLPKNSPLAMSALGKVPAGLPADLLLNRPD---IR 291
Query 264 QATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLISTNGQFDQIGLELSWNVFN 323
A Q A +AA +P+++ A+ G + L ++ ++S +FN
Sbjct 292 SAEHQLMAANANIGAARAAFFPRISLTASAGSASSDLDGLFNSGSDSWSFAPQISVPIFN 351
Query 324 GGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKLQARKAAMSSAELV 383
G+ R ++ A + D + + + + A +V T +L A+ + + +
Sbjct 352 AGKLRANLDYAELQKDVGVATYEKSIQTAFREVADGLAARGTYGKQLSAQSELVDNYKAY 411
Query 384 SQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYLVNVLKLKAAVG 434
++ Y++G+ + + VL AQR FS++Q LN Q D + + ++L A+G
Sbjct 412 FSLAQQRYDQGVDSYLTVLDAQRELFSSQQKLLNDQLDQINSEVQLYKALG 462
Score = 28.5 bits (62), Expect = 0.006
Identities = 33/175 (19%), Positives = 70/175 (40%), Gaps = 30/175 (17%)
Query 34 NDPALQADQYQFQADQLNLGLATGNLLPTVTL---AGNVTRDRQTVKNDQS--------F 82
N P +++ ++Q A N+G A P ++L AG+ + D + N S
Sbjct 286 NRPDIRSAEHQLMAANANIGAARAAFFPRISLTASAGSASSDLDGLFNSGSDSWSFAPQI 345
Query 83 ELPAFGDAS-NALVSNTSTKKQVSLTARQPIFRMDAWQGYKQVKTSVLLSEVTLK-IQKQ 140
+P F A + +K V + + +++V + K + Q
Sbjct 346 SVPIFNAGKLRANLDYAELQKDVGVAT----YEKSIQTAFREVADGLAARGTYGKQLSAQ 401
Query 141 QHILDVAEAYFNVLRQQ-------------ALSAAYLQEEQALLQQLDMMNAKLK 182
++D +AYF++ +Q+ A + +++ L QLD +N++++
Sbjct 402 SELVDNYKAYFSLAQQRYDQGVDSYLTVLDAQRELFSSQQKLLNDQLDQINSEVQ 456
>Q93PU3 Toluene efflux pump outer membrane protein TtgI [Pseudomonas
putida (strain DOT-T1E)]
Length=470
Score = 64.7 bits (156), Expect = 2e-14
Identities = 64/291 (22%), Positives = 122/291 (42%), Gaps = 4/291 (1%)
Query 145 DVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGFVAKSDVSEANAQYQNARAN 204
DVA YF QAL + ++ L M+ + G ++ DV +A A+A
Sbjct 175 DVATTYFLWRTDQALLELTEATLTSYVESLAMIESSAWAGTSSELDVRQARTLVNQAQAQ 234
Query 205 RIAGEVQMMLAQEQLNQYIGANSTQNLATLRP-DFQFQSPYPAQLQDWLMLAQTHNLAIQ 263
+ ++ L +G+ +L P PA L L+L + I+
Sbjct 235 QALYTRRIAQDVNALELLLGSKIPTDLPKNSPLAMSALGKVPAGLPADLLLNRPD---IR 291
Query 264 QATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLISTNGQFDQIGLELSWNVFN 323
A Q A +AA +P+++ A+ G + L ++ ++S +FN
Sbjct 292 SAEHQLMAANANIGAARAAFFPRISLTASAGSASSDLDGLFNSGSDSWSFAPQISVPIFN 351
Query 324 GGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKLQARKAAMSSAELV 383
G+ R ++ A + D + + + + A +V T +L A+ + + +
Sbjct 352 AGKLRANLDYAELQKDVGVATYEKSIQTAFREVADGLAARGTYGKQLSAQSELVDNYKAY 411
Query 384 SQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYLVNVLKLKAAVG 434
++ Y++G+ + + VL AQR FS++Q LN Q D + + ++L A+G
Sbjct 412 FSLAQQRYDQGVDSYLTVLDAQRELFSSQQKLLNDQLDQINSEVQLYKALG 462
Score = 28.5 bits (62), Expect = 0.006
Identities = 33/175 (19%), Positives = 70/175 (40%), Gaps = 30/175 (17%)
Query 34 NDPALQADQYQFQADQLNLGLATGNLLPTVTL---AGNVTRDRQTVKNDQS--------F 82
N P +++ ++Q A N+G A P ++L AG+ + D + N S
Sbjct 286 NRPDIRSAEHQLMAANANIGAARAAFFPRISLTASAGSASSDLDGLFNSGSDSWSFAPQI 345
Query 83 ELPAFGDAS-NALVSNTSTKKQVSLTARQPIFRMDAWQGYKQVKTSVLLSEVTLK-IQKQ 140
+P F A + +K V + + +++V + K + Q
Sbjct 346 SVPIFNAGKLRANLDYAELQKDVGVAT----YEKSIQTAFREVADGLAARGTYGKQLSAQ 401
Query 141 QHILDVAEAYFNVLRQQ-------------ALSAAYLQEEQALLQQLDMMNAKLK 182
++D +AYF++ +Q+ A + +++ L QLD +N++++
Sbjct 402 SELVDNYKAYFSLAQQRYDQGVDSYLTVLDAQRELFSSQQKLLNDQLDQINSEVQ 456
>P0C071 Multidrug/solvent efflux pump outer membrane protein MepC
[Pseudomonas putida]
Length=484
Score = 63.9 bits (154), Expect = 4e-14
Identities = 88/415 (21%), Positives = 161/415 (39%), Gaps = 34/415 (8%)
Query 30 LAKNND---PALQADQYQFQADQLNLGLATGNLLPTVTLAGNVTRDRQTVKNDQSFELPA 86
L N D AL D Y+ Q + +L P V+ G+ +R R Q+ E
Sbjct 73 LVNNRDLRVAALNLDAYRAQ-----YRIQRADLFPAVSATGSGSRQRVPANMSQTGE--- 124
Query 87 FGDASNALVSNTSTKKQVSLTARQPIFRMDAWQGYK----QVKTSVLLSEVTLKIQKQQH 142
+ Q S T + +D + + Q + L SE + +
Sbjct 125 -----------SGITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIAL 173
Query 143 ILDVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGFVAKSDVSEANAQYQNAR 202
+ VA AY+ QAL + + + ++ + G + DVS+A + AR
Sbjct 174 VASVANAYYTWQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGAR 233
Query 203 ANRIAGEVQMMLAQE--QLNQYIGANSTQNLAT-LRPDFQFQSPYPAQLQDWLMLAQTHN 259
+ Q ++AQ+ L +G +LA L D + PA L ++ +
Sbjct 234 VKY--SQYQRLVAQDVNSLTVLLGTGIPADLAKPLELDADQLAEVPAGLPSDILQRRPD- 290
Query 260 LAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLISTNGQFDQIGLELSW 319
IQ+A + A +AA +P ++ A G L S +++
Sbjct 291 --IQEAEHLLKAANANIGAARAAFFPSISLTANAGSLSPDMGHLFSGGQGTWLFQPQINL 348
Query 320 NVFNGGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKLQARKAAMSS 379
+FN G + S+ + I D ++ + + A +V +T + +LQA++ + +
Sbjct 349 PIFNAGSLKASLDYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQA 408
Query 380 AELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYLVNVLKLKAAVG 434
+ + + Y G+ + + L AQRN FSA+Q + + L + + L A+G
Sbjct 409 NQDYYRLAERRYRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALG 463
Score = 31.2 bits (69), Expect = 8e-04
Identities = 42/203 (21%), Positives = 84/203 (41%), Gaps = 10/203 (5%)
Query 248 LQDWLMLAQTHNLAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLIST- 306
LQ + + +N ++ A L R+++A L+P ++A + G + P + T
Sbjct 65 LQQLIQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGS-GSRQRVPANMSQTG 123
Query 307 -NGQFDQIGLELSWNVFN---GGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQ 362
+G Q L + + G+ R+ ++A ++ + + V A+
Sbjct 124 ESGITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVASVANAYYT 183
Query 363 LETDQSKLQARKAAMSSAELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDY 422
+ DQ+ + + + + E +R S G+ + +DV A+ A+ Y +QY
Sbjct 184 WQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKY--SQYQR 241
Query 423 LV--NVLKLKAAVGQLSEQDLAE 443
LV +V L +G DLA+
Sbjct 242 LVAQDVNSLTVLLGTGIPADLAK 264
>Q88N32 Probable efflux pump outer membrane protein TtgC [Pseudomonas
putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB
11950 / KT2440)]
Length=484
Score = 63.9 bits (154), Expect = 4e-14
Identities = 88/415 (21%), Positives = 161/415 (39%), Gaps = 34/415 (8%)
Query 30 LAKNND---PALQADQYQFQADQLNLGLATGNLLPTVTLAGNVTRDRQTVKNDQSFELPA 86
L N D AL D Y+ Q + +L P V+ G+ +R R Q+ E
Sbjct 73 LVNNRDLRVAALNLDAYRAQ-----YRIQRADLFPAVSATGSGSRQRVPANMSQTGE--- 124
Query 87 FGDASNALVSNTSTKKQVSLTARQPIFRMDAWQGYK----QVKTSVLLSEVTLKIQKQQH 142
+ Q S T + +D + + Q + L SE + +
Sbjct 125 -----------SGITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIAL 173
Query 143 ILDVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGFVAKSDVSEANAQYQNAR 202
+ VA AY+ QAL + + + ++ + G + DVS+A + AR
Sbjct 174 VASVANAYYTWQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGAR 233
Query 203 ANRIAGEVQMMLAQE--QLNQYIGANSTQNLAT-LRPDFQFQSPYPAQLQDWLMLAQTHN 259
+ Q ++AQ+ L +G +LA L D + PA L ++ +
Sbjct 234 VKY--SQYQRLVAQDVNSLTVLLGTGIPADLAKPLELDADQLAEVPAGLPSDILQRRPD- 290
Query 260 LAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLISTNGQFDQIGLELSW 319
IQ+A + A +AA +P ++ A G L S +++
Sbjct 291 --IQEAEHLLKAANANIGAARAAFFPSISLTANAGSLSPDMGHLFSGGQGTWLFQPQINL 348
Query 320 NVFNGGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKLQARKAAMSS 379
+FN G + S+ + I D ++ + + A +V +T + +LQA++ + +
Sbjct 349 PIFNAGSLKASLDYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQA 408
Query 380 AELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYLVNVLKLKAAVG 434
+ + + Y G+ + + L AQRN FSA+Q + + L + + L A+G
Sbjct 409 NQDYYRLAERRYRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALG 463
Score = 31.2 bits (69), Expect = 8e-04
Identities = 42/203 (21%), Positives = 84/203 (41%), Gaps = 10/203 (5%)
Query 248 LQDWLMLAQTHNLAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLIST- 306
LQ + + +N ++ A L R+++A L+P ++A + G + P + T
Sbjct 65 LQQLIQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGS-GSRQRVPANMSQTG 123
Query 307 -NGQFDQIGLELSWNVFN---GGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQ 362
+G Q L + + G+ R+ ++A ++ + + V A+
Sbjct 124 ESGITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVASVANAYYT 183
Query 363 LETDQSKLQARKAAMSSAELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDY 422
+ DQ+ + + + + E +R S G+ + +DV A+ A+ Y +QY
Sbjct 184 WQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKY--SQYQR 241
Query 423 LV--NVLKLKAAVGQLSEQDLAE 443
LV +V L +G DLA+
Sbjct 242 LVAQDVNSLTVLLGTGIPADLAK 264
>Q9KJC1 Antibiotic efflux pump outer membrane protein ArpC [Pseudomonas
putida]
Length=484
Score = 63.9 bits (154), Expect = 4e-14
Identities = 88/415 (21%), Positives = 161/415 (39%), Gaps = 34/415 (8%)
Query 30 LAKNND---PALQADQYQFQADQLNLGLATGNLLPTVTLAGNVTRDRQTVKNDQSFELPA 86
L N D AL D Y+ Q + +L P V+ G+ +R R Q+ E
Sbjct 73 LVNNRDLRVAALNLDAYRAQ-----YRIQRADLFPAVSATGSGSRQRVPANMSQTGE--- 124
Query 87 FGDASNALVSNTSTKKQVSLTARQPIFRMDAWQGYK----QVKTSVLLSEVTLKIQKQQH 142
+ Q S T + +D + + Q + L SE + +
Sbjct 125 -----------SGITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIAL 173
Query 143 ILDVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGFVAKSDVSEANAQYQNAR 202
+ VA AY+ QAL + + + ++ + G + DVS+A + AR
Sbjct 174 VASVANAYYTWQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGAR 233
Query 203 ANRIAGEVQMMLAQE--QLNQYIGANSTQNLAT-LRPDFQFQSPYPAQLQDWLMLAQTHN 259
+ Q ++AQ+ L +G +LA L D + PA L ++ +
Sbjct 234 VKY--SQYQRLVAQDVNSLTVLLGTGIPADLAKPLELDADQLAEVPAGLPSDILQRRPD- 290
Query 260 LAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLISTNGQFDQIGLELSW 319
IQ+A + A +AA +P ++ A G L S +++
Sbjct 291 --IQEAEHLLKAANANIGAARAAFFPSISLTANAGSLSPDMGHLFSGGQGTWLFQPQINL 348
Query 320 NVFNGGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKLQARKAAMSS 379
+FN G + S+ + I D ++ + + A +V +T + +LQA++ + +
Sbjct 349 PIFNAGSLKASLDYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQA 408
Query 380 AELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYLVNVLKLKAAVG 434
+ + + Y G+ + + L AQRN FSA+Q + + L + + L A+G
Sbjct 409 NQDYYRLAERRYRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALG 463
Score = 31.2 bits (69), Expect = 8e-04
Identities = 42/203 (21%), Positives = 84/203 (41%), Gaps = 10/203 (5%)
Query 248 LQDWLMLAQTHNLAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLIST- 306
LQ + + +N ++ A L R+++A L+P ++A + G + P + T
Sbjct 65 LQQLIQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGS-GSRQRVPANMSQTG 123
Query 307 -NGQFDQIGLELSWNVFN---GGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQ 362
+G Q L + + G+ R+ ++A ++ + + V A+
Sbjct 124 ESGITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVASVANAYYT 183
Query 363 LETDQSKLQARKAAMSSAELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDY 422
+ DQ+ + + + + E +R S G+ + +DV A+ A+ Y +QY
Sbjct 184 WQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKY--SQYQR 241
Query 423 LV--NVLKLKAAVGQLSEQDLAE 443
LV +V L +G DLA+
Sbjct 242 LVAQDVNSLTVLLGTGIPADLAK 264
>Q9WWZ8 Toluene efflux pump outer membrane protein TtgC [Pseudomonas
putida (strain DOT-T1E)]
Length=484
Score = 62.8 bits (151), Expect = 9e-14
Identities = 87/415 (21%), Positives = 161/415 (39%), Gaps = 34/415 (8%)
Query 30 LAKNND---PALQADQYQFQADQLNLGLATGNLLPTVTLAGNVTRDRQTVKNDQSFELPA 86
L N D AL D Y+ Q + +L P V+ G+ +R R Q+ E
Sbjct 73 LVNNRDLRVAALNLDAYRAQ-----YRIQRADLFPAVSATGSGSRQRVPANMSQTGE--- 124
Query 87 FGDASNALVSNTSTKKQVSLTARQPIFRMDAWQGYK----QVKTSVLLSEVTLKIQKQQH 142
+ Q S T + +D + + Q + L SE + +
Sbjct 125 -----------SGITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIAL 173
Query 143 ILDVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGFVAKSDVSEANAQYQNAR 202
+ VA AY+ QAL + + + ++ + G + DVS+A + AR
Sbjct 174 VASVANAYYTWQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGAR 233
Query 203 ANRIAGEVQMMLAQE--QLNQYIGANSTQNLAT-LRPDFQFQSPYPAQLQDWLMLAQTHN 259
+ Q ++AQ+ L +G +LA L D + PA L ++ +
Sbjct 234 VKY--SQYQRLVAQDVNSLTVLLGTGIPADLAKPLELDADQLAEVPAGLPSDILQRRPD- 290
Query 260 LAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLISTNGQFDQIGLELSW 319
IQ+A + A +AA +P ++ A G L + +++
Sbjct 291 --IQEAEHLLKAANANIGAARAAFFPSISLTANAGSLSPDMGHLFAGGQGTWLFQPQINL 348
Query 320 NVFNGGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKLQARKAAMSS 379
+FN G + S+ + I D ++ + + A +V +T + +LQA++ + +
Sbjct 349 PIFNAGSLKASLDYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQA 408
Query 380 AELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYLVNVLKLKAAVG 434
+ + + Y G+ + + L AQRN FSA+Q + + L + + L A+G
Sbjct 409 NQDYYRLAERRYRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALG 463
Score = 31.2 bits (69), Expect = 8e-04
Identities = 42/203 (21%), Positives = 84/203 (41%), Gaps = 10/203 (5%)
Query 248 LQDWLMLAQTHNLAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLIST- 306
LQ + + +N ++ A L R+++A L+P ++A + G + P + T
Sbjct 65 LQQLIQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGS-GSRQRVPANMSQTG 123
Query 307 -NGQFDQIGLELSWNVFN---GGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQ 362
+G Q L + + G+ R+ ++A ++ + + V A+
Sbjct 124 ESGITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVASVANAYYT 183
Query 363 LETDQSKLQARKAAMSSAELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDY 422
+ DQ+ + + + + E +R S G+ + +DV A+ A+ Y +QY
Sbjct 184 WQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKY--SQYQR 241
Query 423 LV--NVLKLKAAVGQLSEQDLAE 443
LV +V L +G DLA+
Sbjct 242 LVAQDVNSLTVLLGTGIPADLAK 264
>Q9ZHD2 Probable outer membrane lipoprotein SilC [Salmonella typhimurium]
Length=461
Score = 62.0 bits (149), Expect = 2e-13
Identities = 61/301 (20%), Positives = 130/301 (43%), Gaps = 15/301 (5%)
Query 142 HIL---DVAEAYFNVLRQQALSAAYLQEEQALLQQLDMMNAKLKQGFVAKSD----VSEA 194
HIL +V+++YF+ Q L+ L+ + L+ + A ++Q V S + +A
Sbjct 163 HILLVSNVSQSYFS----QQLAYEQLRIARETLKNYEQSYAFVEQQLVTGSTNVLALEQA 218
Query 195 NAQYQNARANRIAGEVQMMLAQEQLNQYIGA-NSTQNLATLRPDFQFQSPYPAQLQDWLM 253
Q ++ RA E + A L +G + + ++ P L ++
Sbjct 219 RGQIESTRAEIAKREGDLAQANNALQLVLGTYRAVPSEKGIKGGEIAPVKLPPNLSSQIL 278
Query 254 LAQTHNLAIQQATLQRQYAEDGRRVEKAALYPQLNAVATYGYTDQSPETLISTNGQFDQI 313
L + I +A Q + A+ +AA +P + + + +L ++
Sbjct 279 LQRPD---IMEAEYQLKAADANIGAARAAFFPSITLTSGLSSSSTELSSLFTSGSGMWNF 335
Query 314 GLELSWNVFNGGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKLQAR 373
++ +FN G+ + ++K A I ++ + ++A DV ++ +L+++
Sbjct 336 IPKIEIPIFNAGRNKANLKLAEIRQQQSVVNYEQKIQSAFKDVSDTLALRDSLSQQLESQ 395
Query 374 KAAMSSAELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYLVNVLKLKAAV 433
+ + S ++ Q +R Y G + ++VL A+R+ F+ +Q L+ Y VN + L A+
Sbjct 396 QRYLDSLQITLQRARGLYASGAVSYIEVLDAERSLFATQQTILDLTYSRQVNEINLFTAL 455
Query 434 G 434
G
Sbjct 456 G 456
Score = 26.9 bits (58), Expect = 0.017
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 17/123 (14%)
Query 36 PALQADQYQFQADQLNLGLATGNLLPTVTLAGNVTRDRQTVKN-----------DQSFEL 84
P + +YQ +A N+G A P++TL ++ + + E+
Sbjct 282 PDIMEAEYQLKAADANIGAARAAFFPSITLTSGLSSSSTELSSLFTSGSGMWNFIPKIEI 341
Query 85 PAFGDASN-ALVSNTSTKKQVSLTARQPIFRMDAWQGYKQVK-TSVLLSEVTLKIQKQQH 142
P F N A + ++Q S+ + +K V T L ++ +++ QQ
Sbjct 342 PIFNAGRNKANLKLAEIRQQQSVVN----YEQKIQSAFKDVSDTLALRDSLSQQLESQQR 397
Query 143 ILD 145
LD
Sbjct 398 YLD 400
Score = 26.2 bits (56), Expect = 0.029
Identities = 52/207 (25%), Positives = 80/207 (39%), Gaps = 53/207 (26%)
Query 255 AQTHNLAIQQATLQRQYAEDGRRVEKAALYPQLNAVA--TY--GYTDQSPETLISTNGQF 310
A +N ++ A L+ + A V A YPQLNA + TY G P T Q
Sbjct 71 ALNNNRDLRMAALKVEEARAQFNVTDADRYPQLNASSGITYNGGLKGDKPTT------QE 124
Query 311 DQIGLELSWNVFNGGQTRTSIKKASILIDKAQSQLDTAKRNASVDVKKAFLQLETDQSKL 370
GLELS+ + G+ K S+ D AS + ++A L
Sbjct 125 YDAGLELSYELDFFGKL------------KNMSEADRQNYFASEEARRAVHIL------- 165
Query 371 QARKAAMSSAELVSQSSRASYNEGLKTMVDVLLAQRNAFSAKQDYLNAQYDYL---VNVL 427
LVS S++ +++ L + +A+ + +Q Y + + NVL
Sbjct 166 -----------LVSNVSQSYFSQQL-AYEQLRIARETLKNYEQSYAFVEQQLVTGSTNVL 213
Query 428 KLKAAVGQLS---------EQDLAELN 445
L+ A GQ+ E DLA+ N
Sbjct 214 ALEQARGQIESTRAEIAKREGDLAQAN 240
Lambda K H a alpha
0.316 0.128 0.350 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2544796
Database: 512ff89c3aea75cd5ec51247cdceec9f.SwissProt.fasta
Posted date: May 20, 2024 10:11 PM
Number of letters in database: 7,079
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
