BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 1be296098452c4f50a9a894e881cdd23.SwissProt.fasta
           1 sequences; 581 total letters



Query= ACIAD0499

Length=93
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q21065 Intermediate filament protein ifa-3 [Caenorhabditis elegans]   34.7    2e-07


>Q21065 Intermediate filament protein ifa-3 [Caenorhabditis elegans]
Length=581

 Score = 34.7 bits (78),  Expect = 2e-07
 Identities = 19/45 (42%), Positives = 26/45 (58%), Gaps = 0/45 (0%)

Query  46   DEVKALLGDQTALVAQHMIQAALFGLLEKQVNQLQAEVVDEQPQY  90
            DEVK L    + L ++H   AA  GLLEKQ+  L  ++ D+Q  Y
Sbjct  327  DEVKRLHSQVSELKSKHAELAARNGLLEKQLEDLNYQLEDDQRSY  371


 Score = 14.6 bits (26),  Expect = 1.6
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (11%)

Query  26   ELALRNADSEQE-PLVKIQFSDE---VKALLGDQTALV  59
            ELA RN   E++   +  Q  D+    +A L D+ A V
Sbjct  345  ELAARNGLLEKQLEDLNYQLEDDQRSYEAALNDKDAQV  382


 Score = 13.5 bits (23),  Expect = 3.8
 Identities = 4/12 (33%), Positives = 7/12 (58%), Gaps = 0/12 (0%)

Query  72   LEKQVNQLQAEV  83
            +  Q N+  AE+
Sbjct  311  INTQTNRQNAEI  322



Lambda      K        H        a         alpha
   0.320    0.136    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 39689


  Database: 1be296098452c4f50a9a894e881cdd23.SwissProt.fasta
    Posted date:  May 20, 2024  9:51 PM
  Number of letters in database: 581
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40