BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: ba3cdd3deaa07ce9aa39052c8c0bc6e9.SwissProt.fasta
           6 sequences; 1,039 total letters



Query= ACIAD0868

Length=187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P43790 Large ribosomal RNA subunit accumulation protein YceD [Hae...  73.9    7e-21
P0AB29 Large ribosomal RNA subunit accumulation protein YceD [Esc...  67.8    1e-18
P0AB30 Large ribosomal RNA subunit accumulation protein YceD [Esc...  67.8    1e-18
P0AB28 Large ribosomal RNA subunit accumulation protein YceD [Esc...  67.8    1e-18
P0A1T3 Large ribosomal RNA subunit accumulation protein YceD [Sal...  63.9    4e-17
P0A1T2 Large ribosomal RNA subunit accumulation protein YceD [Sal...  63.9    4e-17


>P43790 Large ribosomal RNA subunit accumulation protein YceD 
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 
/ Rd)]
Length=174

 Score = 73.9 bits (180),  Expect = 7e-21
 Identities = 54/185 (29%), Positives = 88/185 (48%), Gaps = 25/185 (14%)

Query  7    PAQIEPYKWAEQGFTWSGTLPLSRFARIAREAVGSINDQLIYIDCKLSMDAYHRIVWFEG  66
            P  ++P K A++   + G    ++  R+A   V  ++D  + +   +      ++V  +G
Sbjct  7    PLTVDPIKDAQRRLDYVGYYAANQLERLAESVVNVLSDAQVTLSFYVDPQ---KLVVMKG  63

Query  67   HIETKVPLECQRCLEPVEIPLVSDFRLALV---DDESLIERLDEDADFIVLGESESSTKG  123
             ++  V LECQRC EP +  L  +F  + V   D    +  + E  +F   GE       
Sbjct  64   KVQIDVDLECQRCNEPYKQTLECEFTYSPVANWDQADDLPEIYEPIEFNEFGE-------  116

Query  124  DFATPATVDLLSLLEDELLLLMPLSPKHDA--CEHKHQPTVQDIVEE---KRDNPFDVLA  178
                   +DL+  +EDEL+L +PL P H +  CE   Q  V  ++ E   K+ NPF VLA
Sbjct  117  -------IDLIGTVEDELILALPLVPMHSSEHCEVSAQEQVFGVLPEELAKKPNPFAVLA  169

Query  179  SLKGK  183
            +LK K
Sbjct  170  NLKQK  174


>P0AB29 Large ribosomal RNA subunit accumulation protein YceD 
[Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=173

 Score = 67.8 bits (164),  Expect = 1e-18
 Identities = 52/182 (29%), Positives = 88/182 (48%), Gaps = 20/182 (11%)

Query  7    PAQIEPYKWAEQGFTWSGTLPLSRFARIAREAVGSINDQLIYIDCKLSMDAYH-RIVWFE  65
            P  ++P + A++   + G     +  R+A   V   +D    ++C +S    + R+    
Sbjct  7    PLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD----VECSMSFAIDNQRLAVLN  62

Query  66   GHIETKVPLECQRCLEPVEIPLVSDFRLALVDDESLIERLDEDADFIVLGESESSTKGDF  125
            G  +  V LECQRC +P    + + +  + V  +   E L E  + I + E         
Sbjct  63   GDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEF--------  114

Query  126  ATPATVDLLSLLEDELLLLMPLSPKHDA--CEHKHQPTV-QDIVEE-KRDNPFDVLASLK  181
                 +DLL+++EDE++L +P+ P HD+  CE      V  ++ EE ++ NPF VLASLK
Sbjct  115  ---GEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLK  171

Query  182  GK  183
             K
Sbjct  172  RK  173


>P0AB30 Large ribosomal RNA subunit accumulation protein YceD 
[Escherichia coli O157:H7]
Length=173

 Score = 67.8 bits (164),  Expect = 1e-18
 Identities = 52/182 (29%), Positives = 88/182 (48%), Gaps = 20/182 (11%)

Query  7    PAQIEPYKWAEQGFTWSGTLPLSRFARIAREAVGSINDQLIYIDCKLSMDAYH-RIVWFE  65
            P  ++P + A++   + G     +  R+A   V   +D    ++C +S    + R+    
Sbjct  7    PLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD----VECSMSFAIDNQRLAVLN  62

Query  66   GHIETKVPLECQRCLEPVEIPLVSDFRLALVDDESLIERLDEDADFIVLGESESSTKGDF  125
            G  +  V LECQRC +P    + + +  + V  +   E L E  + I + E         
Sbjct  63   GDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEF--------  114

Query  126  ATPATVDLLSLLEDELLLLMPLSPKHDA--CEHKHQPTV-QDIVEE-KRDNPFDVLASLK  181
                 +DLL+++EDE++L +P+ P HD+  CE      V  ++ EE ++ NPF VLASLK
Sbjct  115  ---GEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLK  171

Query  182  GK  183
             K
Sbjct  172  RK  173


>P0AB28 Large ribosomal RNA subunit accumulation protein YceD 
[Escherichia coli (strain K12)]
Length=173

 Score = 67.8 bits (164),  Expect = 1e-18
 Identities = 52/182 (29%), Positives = 88/182 (48%), Gaps = 20/182 (11%)

Query  7    PAQIEPYKWAEQGFTWSGTLPLSRFARIAREAVGSINDQLIYIDCKLSMDAYH-RIVWFE  65
            P  ++P + A++   + G     +  R+A   V   +D    ++C +S    + R+    
Sbjct  7    PLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD----VECSMSFAIDNQRLAVLN  62

Query  66   GHIETKVPLECQRCLEPVEIPLVSDFRLALVDDESLIERLDEDADFIVLGESESSTKGDF  125
            G  +  V LECQRC +P    + + +  + V  +   E L E  + I + E         
Sbjct  63   GDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEALPEAYEPIEVNEF--------  114

Query  126  ATPATVDLLSLLEDELLLLMPLSPKHDA--CEHKHQPTV-QDIVEE-KRDNPFDVLASLK  181
                 +DLL+++EDE++L +P+ P HD+  CE      V  ++ EE ++ NPF VLASLK
Sbjct  115  ---GEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQKPNPFAVLASLK  171

Query  182  GK  183
             K
Sbjct  172  RK  173


>P0A1T3 Large ribosomal RNA subunit accumulation protein YceD 
[Salmonella typhi]
Length=173

 Score = 63.9 bits (154),  Expect = 4e-17
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 20/182 (11%)

Query  7    PAQIEPYKWAEQGFTWSGTLPLSRFARIAREAVGSINDQLIYIDCKLSMDAYH-RIVWFE  65
            P  ++P + A++   + G     +  R+A   V   +D    ++C +S    + R+    
Sbjct  7    PLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD----VECSMSFAIDNQRLAVLT  62

Query  66   GHIETKVPLECQRCLEPVEIPLVSDFRLALVDDESLIERLDEDADFIVLGESESSTKGDF  125
            G     V LECQRC +P    + + +  + V  +   E L E  + I + E         
Sbjct  63   GDAVVTVSLECQRCGKPFTHQVHTTYCFSPVRSDEQAEALPEAYEPIEVNEF--------  114

Query  126  ATPATVDLLSLLEDELLLLMPLSPKHDA--CEHKHQPTVQDIV--EEKRDNPFDVLASLK  181
                 +DLL+ +EDE++L +P+ P HD+  CE      V   +  E ++ NPF VLASLK
Sbjct  115  ---GEIDLLATVEDEIILALPVVPVHDSEHCEVSEADMVFGELPDEAQKPNPFAVLASLK  171

Query  182  GK  183
             K
Sbjct  172  RK  173


>P0A1T2 Large ribosomal RNA subunit accumulation protein YceD 
[Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=173

 Score = 63.9 bits (154),  Expect = 4e-17
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 20/182 (11%)

Query  7    PAQIEPYKWAEQGFTWSGTLPLSRFARIAREAVGSINDQLIYIDCKLSMDAYH-RIVWFE  65
            P  ++P + A++   + G     +  R+A   V   +D    ++C +S    + R+    
Sbjct  7    PLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD----VECSMSFAIDNQRLAVLT  62

Query  66   GHIETKVPLECQRCLEPVEIPLVSDFRLALVDDESLIERLDEDADFIVLGESESSTKGDF  125
            G     V LECQRC +P    + + +  + V  +   E L E  + I + E         
Sbjct  63   GDAVVTVSLECQRCGKPFTHQVHTTYCFSPVRSDEQAEALPEAYEPIEVNEF--------  114

Query  126  ATPATVDLLSLLEDELLLLMPLSPKHDA--CEHKHQPTVQDIV--EEKRDNPFDVLASLK  181
                 +DLL+ +EDE++L +P+ P HD+  CE      V   +  E ++ NPF VLASLK
Sbjct  115  ---GEIDLLATVEDEIILALPVVPVHDSEHCEVSEADMVFGELPDEAQKPNPFAVLASLK  171

Query  182  GK  183
             K
Sbjct  172  RK  173



Lambda      K        H        a         alpha
   0.321    0.138    0.417    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 133068


  Database: ba3cdd3deaa07ce9aa39052c8c0bc6e9.SwissProt.fasta
    Posted date:  May 21, 2024  12:02 AM
  Number of letters in database: 1,039
  Number of sequences in database:  6



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40