BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: d06fe4648bedd9256f6bbb9e9dfa63fc.SwissProt.fasta
           5 sequences; 711 total letters



Query= ACIAD0931

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P54720 Putative oxidoreductase CatD [Bacillus subtilis (strain 168)]  47.0    3e-11
P0AD48 Inner membrane protein YphA [Shigella flexneri]                46.2    7e-11
P0AD47 Inner membrane protein YphA [Escherichia coli (strain K12)]    46.2    7e-11
P44069 Uncharacterized protein HI_0886 [Haemophilus influenzae (s...  36.6    2e-07
O06349 Uncharacterized membrane protein Rv3486 [Mycobacterium tub...  34.3    1e-06


>P54720 Putative oxidoreductase CatD [Bacillus subtilis (strain 
168)]
Length=134

 Score = 47.0 bits (110),  Expect = 3e-11
 Identities = 31/90 (34%), Positives = 50/90 (56%), Gaps = 10/90 (11%)

Query  25   IAALALRCYLTPIFWMAGTNKLMHFQDTVEWFGNTDWGLGLP--FPYVMAALATSTEIAG  82
            I  L LR     IF++ G +K    + T+++FG+    +GLP    YV+AA+    E+ G
Sbjct  7    IGTLLLRVITGIIFFVHGLSKFQGMEGTIQFFGS----IGLPSFMAYVIAAI----ELIG  58

Query  83   AVLLALGLFTRFMSIPLIITMLVAIFSVHL  112
             VL+  GL TR + +   +T++ AI +V L
Sbjct  59   GVLVFFGLATRIVGVLFALTLIGAIITVKL  88


 Score = 15.8 bits (29),  Expect = 1.8
 Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 0/25 (0%)

Query  67   FPYVMAALATSTEIAGAVLLALGLF  91
            F Y++   +    + G+  LAL  F
Sbjct  98   FDYLLLLTSIHLALTGSRFLALDPF  122


>P0AD48 Inner membrane protein YphA [Shigella flexneri]
Length=140

 Score = 46.2 bits (108),  Expect = 7e-11
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 8/102 (8%)

Query  25   IAALALRCYLTPIFWMAGTNKLMHFQDTVEWFGNTDWGLGLPFPYVMAALATSTEIAGAV  84
            +  L  R  +  IF + G  K+M F  TV++  +    LG P P + A +A   E+  A+
Sbjct  15   VLLLIARIAVVLIFIIFGFPKMMGFDGTVQYMAS----LGAPMPMLAAIIAVVMEVPAAI  70

Query  85   LLALGLFTRFMSIPLII-TMLVAIFSVHLPNGWQAIADPNAP  125
            L+ LG FTR +++  I  T+  A+   H    W    D   P
Sbjct  71   LIVLGFFTRPLAVLFIFYTLGTAVIGHHY---WDMTGDAVGP  109


>P0AD47 Inner membrane protein YphA [Escherichia coli (strain 
K12)]
Length=140

 Score = 46.2 bits (108),  Expect = 7e-11
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 8/102 (8%)

Query  25   IAALALRCYLTPIFWMAGTNKLMHFQDTVEWFGNTDWGLGLPFPYVMAALATSTEIAGAV  84
            +  L  R  +  IF + G  K+M F  TV++  +    LG P P + A +A   E+  A+
Sbjct  15   VLLLIARIAVVLIFIIFGFPKMMGFDGTVQYMAS----LGAPMPMLAAIIAVVMEVPAAI  70

Query  85   LLALGLFTRFMSIPLII-TMLVAIFSVHLPNGWQAIADPNAP  125
            L+ LG FTR +++  I  T+  A+   H    W    D   P
Sbjct  71   LIVLGFFTRPLAVLFIFYTLGTAVIGHHY---WDMTGDAVGP  109


>P44069 Uncharacterized protein HI_0886 [Haemophilus influenzae 
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=134

 Score = 36.6 bits (83),  Expect = 2e-07
 Identities = 29/83 (35%), Positives = 43/83 (52%), Gaps = 7/83 (8%)

Query  30   LRCYLTPIFWMAGTNKLMHFQDTVEWFGNTDWGLGLPFPYVMAALATSTEIAGAVLLALG  89
            LR  +  +F + GT K + F  ++   GN    +G P    M  +A   EI G++LL LG
Sbjct  15   LRIVVAYMFILHGTAKFLEFPISMTG-GNG--AVGDP----MLLVAGVIEIVGSILLILG  67

Query  90   LFTRFMSIPLIITMLVAIFSVHL  112
            LFTR  +  L + M  A F +H+
Sbjct  68   LFTRQAAFILSVEMAYAYFFLHV  90


>O06349 Uncharacterized membrane protein Rv3486 [Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=163

 Score = 34.3 bits (77),  Expect = 1e-06
 Identities = 28/90 (31%), Positives = 43/90 (48%), Gaps = 4/90 (4%)

Query  19   LKHADGI-AALALRCYLTPIFWMAGTNKLMHFQDTVEWFGNTDWGLGLPFPYVMAALATS  77
            L HA+G  + + +R  +  +F   G  K M+        G  +  +G+P     A L   
Sbjct  14   LLHAEGPPSVICIRLLVGLVFLSEGIQKFMYPDQLGP--GRFE-RIGIPAATFFADLDGV  70

Query  78   TEIAGAVLLALGLFTRFMSIPLIITMLVAI  107
             EI    L+ LGL TR  ++PL+I M+ AI
Sbjct  71   VEIVCGTLVLLGLLTRVAAVPLLIDMVGAI  100


 Score = 13.9 bits (24),  Expect = 8.2
 Identities = 4/9 (44%), Positives = 4/9 (44%), Gaps = 0/9 (0%)

Query  55   WFGNTDWGL  63
            W G   W L
Sbjct  141  WSGPGRWSL  149



Lambda      K        H        a         alpha
   0.327    0.139    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 103012


  Database: d06fe4648bedd9256f6bbb9e9dfa63fc.SwissProt.fasta
    Posted date:  Jun 3, 2024  12:06 AM
  Number of letters in database: 711
  Number of sequences in database:  5



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40