BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 24ce46aceeb64422f517950a081c2d3d.SwissProt.fasta
12 sequences; 5,966 total letters
Query= ACIAD1182
Length=478
Score E
Sequences producing significant alignments: (Bits) Value
P57386 Deoxyribodipyrimidine photo-lyase [Buchnera aphidicola sub... 375 2e-129
Q9KNA8 Deoxyribodipyrimidine photo-lyase [Vibrio cholerae serotyp... 371 4e-128
P25078 Deoxyribodipyrimidine photo-lyase [Salmonella typhimurium ... 362 2e-124
P00914 Deoxyribodipyrimidine photo-lyase [Escherichia coli (strai... 354 2e-121
Q89AJ9 Deoxyribodipyrimidine photo-lyase [Buchnera aphidicola sub... 336 2e-114
P27526 Deoxyribodipyrimidine photo-lyase [Neurospora crassa (stra... 328 1e-109
Q55081 Deoxyribodipyrimidine photo-lyase [Synechocystis sp. (stra... 284 5e-94
Q04449 Deoxyribodipyrimidine photo-lyase [Alkalihalophilus pseudo... 283 1e-93
P05066 Deoxyribodipyrimidine photo-lyase, mitochondrial [Saccharo... 277 2e-90
P05327 Deoxyribodipyrimidine photo-lyase [Synechococcus sp. (stra... 263 9e-86
A9CJC9 Deoxyribodipyrimidine photo-lyase [Agrobacterium fabrum (s... 250 6e-81
Q9HQ46 Deoxyribodipyrimidine photo-lyase [Halobacterium salinarum... 249 1e-80
>P57386 Deoxyribodipyrimidine photo-lyase [Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS)]
Length=483
Score = 375 bits (963), Expect = 2e-129
Identities = 202/475 (43%), Positives = 286/475 (60%), Gaps = 12/475 (3%)
Query 4 LIWFRNDLRLNDHAALWHATQ--AGSTIAFVALSPLQWQQHDDAIIKIDFYMRQLTQLKQ 61
LIWFRNDLR+ D+ AL A Q I+ +P QW + KI F L L++
Sbjct 5 LIWFRNDLRVYDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLISLQK 64
Query 62 ELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSKI 121
EL +NI L + + +I ++ + +++ N E INE RD+ V++ LS+
Sbjct 65 ELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKKLSQK 124
Query 122 GKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQPEI 181
G + FHD LF IRN+ Y+VFT FKK + L+ +IP+CFP P K+K +I
Sbjct 125 GFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKSDRDI 184
Query 182 AKKEAAIPSLKQLGYSQIDQHIQNEWPIGETFALNLLEDFTQDKINRYHESRDYPAQDGT 241
++ ++ L +++ N +P+GE A+N L++F K N Y RDYP D T
Sbjct 185 FLTSISLKNVN-LNFNK------NFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDAT 237
Query 242 SHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEIWLNELLWREFYQQLLFDFPKLS 301
S +S YL+ GI+S R C++ + K LN W +++LWREFY LL FPK+S
Sbjct 238 SMLSPYLSAGIISSRYCLKVLL-KTKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKIS 296
Query 302 RHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRMICAMFLS 361
R + K I W N +HF AW +G TG PI+DAGMRQL GWMHNR+RMI + FL
Sbjct 297 RSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLV 356
Query 362 KNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQSQKFDPEG 421
KNLLI+WR+GE+ F+ +LIDGDLA N+GGWQWSAS G D+ PY RIFNP+ QS+ FD G
Sbjct 357 KNLLINWREGEEHFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESG 416
Query 422 VFLKKWIPELKHLDSKHIHDPYAY--QHKTELNYPKPIIDLKATRKNAIEVFKKS 474
F+KK+IPELK++ + HIH P+ + Q +++YP PII+ +RK ++ +FK++
Sbjct 417 NFIKKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQA 471
Score = 18.5 bits (36), Expect = 6.5
Identities = 6/13 (46%), Positives = 9/13 (69%), Gaps = 0/13 (0%)
Query 1 MNQLIWFRNDLRL 13
+N+L W N LR+
Sbjct 337 LNELGWMHNRLRM 349
>Q9KNA8 Deoxyribodipyrimidine photo-lyase [Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=469
Score = 371 bits (953), Expect = 4e-128
Identities = 194/478 (41%), Positives = 286/478 (60%), Gaps = 22/478 (5%)
Query 3 QLIWFRNDLRLNDHAALWHATQAGSTIAFVALS-PLQWQQHDDAIIKIDFYMRQLTQLKQ 61
+L+WFR DLR D+ AL A +G +A + ++ P QW QH A I+ D R+L +L+Q
Sbjct 2 RLVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQ 61
Query 62 ELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSKI 121
EL +N+PL Q + ++ A + ++ + V AN + ++E +RD Q+ LS+
Sbjct 62 ELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSEQ 121
Query 122 GKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQP-E 180
G F DK + P GS+R K ++VFTPFK+ F P K +P
Sbjct 122 GIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLT--------LFQPPVIGKNRPVA 173
Query 181 IAKKEAAIPSL-----KQLGYSQIDQHIQNEWPIGETFALNLLEDFTQDKINRYHESRDY 235
+ +A+ L + Y +ID W L DF ++++ YH++RD+
Sbjct 174 LWNVPSALAELVWHPEQAFDYPRIDS---TPWAADFETVRAQLRDFCRERVQDYHQARDF 230
Query 236 PAQDGTSHISAYLTIGILSIRQCIQAIFQKQH-GQFFLNNKGQEIWLNELLWREFYQQLL 294
PA++GTS +S YL IG+LS RQC+ ++ + G+ ++G ++WL+EL+WREFYQ L+
Sbjct 231 PAREGTSSLSPYLAIGVLSARQCVARLYHESSMGEL---SEGAQVWLSELIWREFYQHLV 287
Query 295 FDFPKLSRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRM 354
P LS+ + F + + W ++E F+ W +GKTG PIVDA MRQL TGWMHNR+RM
Sbjct 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
Query 355 ICAMFLSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQS 414
I A FL+K+L IDWR GE++FM LIDGD AAN+GGWQW ASTG D PYFRIFNPV+Q
Sbjct 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
Query 415 QKFDPEGVFLKKWIPELKHLDSKHIHDPYAYQHKTELNYPKPIIDLKATRKNAIEVFK 472
+KFDP G F+++W+PEL+ + S +IH P+ Y + YP ++D K R+ + ++K
Sbjct 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARLVDHKQEREVTLRLYK 465
>P25078 Deoxyribodipyrimidine photo-lyase [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=473
Score = 362 bits (929), Expect = 2e-124
Identities = 195/474 (41%), Positives = 274/474 (58%), Gaps = 16/474 (3%)
Query 4 LIWFRNDLRLNDHAALWHATQAGST--IAFVALSPLQWQQHDDAIIKIDFYMRQLTQLKQ 61
L+WFR DLRL D+ AL A + S +A +P QWQ HD A + F QL L+
Sbjct 5 LVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLNALQT 64
Query 62 ELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSKI 121
L IPL+ + + + ++ ++ + ++ N + NE +RD AV++ L +
Sbjct 65 ALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKTLPSV 124
Query 122 GKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQPEI 181
F D + G++ + Y+VFTPFK +RL DIP C P P+I
Sbjct 125 ICEG--FDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVP-------APKI 175
Query 182 AKKEAAIPSLKQLGYSQIDQHIQNE-WPIGETFALNLLEDFTQDKINRYHESRDYPAQDG 240
A L + + Q +P+ E + L F + Y RD+PA DG
Sbjct 176 RVSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDG 235
Query 241 TSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEIWLNELLWREFYQQLLFDFPKL 300
TS +SA L G LS RQC+ + +Q L+ +WLNEL+WREFY+ L+ +P L
Sbjct 236 TSRLSASLATGGLSPRQCLHRLLAEQPQA--LDGGPGSVWLNELIWREFYRHLMTWYPAL 293
Query 301 SRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRMICAMFL 360
+HQPF TK + W EN +F+AW +G+TG PIVDA MRQL ATGWMHNR+RMI A FL
Sbjct 294 CKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFL 353
Query 361 SKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQSQKFDPE 420
K+LLIDWR GE++FM LIDGDLAAN+GGWQW+ASTGTDA+PYFRIFNP TQ ++FD +
Sbjct 354 VKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRD 413
Query 421 GVFLKKWIPELKHLDSKHIHDPYAYQHK--TELNYPKPIIDLKATRKNAIEVFK 472
G F+++W+P L+ + K IH+P+ + K L+YP+PI++ K R + ++
Sbjct 414 GEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYE 467
>P00914 Deoxyribodipyrimidine photo-lyase [Escherichia coli (strain
K12)]
Length=472
Score = 354 bits (909), Expect = 2e-121
Identities = 188/475 (40%), Positives = 275/475 (58%), Gaps = 19/475 (4%)
Query 4 LIWFRNDLRLNDHAALWHATQAGST--IAFVALSPLQWQQHDDAIIKIDFYMRQLTQLKQ 61
L+WFR DLRL+D+ AL A + S +A +P QW H+ + + + QL L+
Sbjct 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query 62 ELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSKI 121
L IPL+ + + + + + + ++ N + +NE RD V+ AL
Sbjct 65 ALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL--- 121
Query 122 GKNLIL--FHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQP 179
+N++ F D + P G++ + Y+VFTPFK +RL +P+C P K +
Sbjct 122 -RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAP-KVRSSG 179
Query 180 EIAKKEAAIPSLKQLGYSQIDQHIQNEWPIGETFALNLLEDFTQDKINRYHESRDYPAQD 239
I + + + + +P+ E A+ L F Q+ Y + RD+PA +
Sbjct 180 SIEPSPSITLNYPRQSFDTA------HFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVE 233
Query 240 GTSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEIWLNELLWREFYQQLLFDFPK 299
GTS +SA L G LS RQC+ + +Q L+ +WLNEL+WREFY+ L+ P
Sbjct 234 GTSRLSASLATGGLSPRQCLHRLLAEQPQA--LDGGAGSVWLNELIWREFYRHLITYHPS 291
Query 300 LSRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRMICAMF 359
L +H+PF T + W N H +AW +GKTG PIVDA MRQL +TGWMHNR+RMI A F
Sbjct 292 LCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASF 351
Query 360 LSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQSQKFDP 419
L K+LLIDWR+GE++FM LIDGDLAAN+GGWQW+ASTGTDA+PYFRIFNP TQ +KFD
Sbjct 352 LVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDH 411
Query 420 EGVFLKKWIPELKHLDSKHIHDPYAYQHK--TELNYPKPIIDLKATRKNAIEVFK 472
EG F+++W+PEL+ + K +H+P+ + K L+YP+PI++ K R + ++
Sbjct 412 EGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYE 466
>Q89AJ9 Deoxyribodipyrimidine photo-lyase [Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp)]
Length=478
Score = 336 bits (862), Expect = 2e-114
Identities = 182/474 (38%), Positives = 279/474 (59%), Gaps = 13/474 (3%)
Query 4 LIWFRNDLRLNDHAALWHATQ--AGSTIAFVALSPLQWQQHDDAIIKIDFYMRQLTQLKQ 61
L+WFRNDLRL+D++AL + + A + +A +P QW++H A K + + LK+
Sbjct 5 LMWFRNDLRLSDNSALHFSCRNNASTVLALFIATPKQWERHCLAPKKKMLIYKNIVALKK 64
Query 62 ELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSKI 121
++ + I + + II + + ++ N+E E +RD +++ L K
Sbjct 65 KITELGIIFYYYESTDYLESTNYIIEFCKIHKVTSIFFNLEYEFYERQRDKIIKKKLKKN 124
Query 122 GKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQPEI 181
+ FHD L GSI+N Y+ F+ FK C ++L ++IP CFP P + K +
Sbjct 125 NIIINCFHDSVLITPGSIKNSYGKMYKKFSYFKYKCIKQLQLNIPSCFPKP-QNKNLHDH 183
Query 182 AKKEAAIPSLKQLGYSQIDQHIQNEWPIGETFALNLLEDFTQDKINRYHESRDYPAQDGT 241
+ IP + ++ +++ N +PIGE L+ F + N+Y+ ++ + T
Sbjct 184 YSLDFTIP----IFHTYLEKFDANIFPIGEDIVYEKLKFFIKYAFNKYNFDQEIFELNST 239
Query 242 SHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEI-WLNELLWREFYQQLLFDFPKL 300
S +SA+L+IG++S RQC+ +F++ + +K +E W+NELLWREFYQ LL+ +P +
Sbjct 240 SMLSAHLSIGVISPRQCVTLLFKEYPD---IIHKLEECKWINELLWREFYQHLLYFYPNI 296
Query 301 SRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRMICAMFL 360
++Q I W+ N + W QG TG PI+DAGMRQLK GW+ NR+RMI A FL
Sbjct 297 GQNQSLYHWENRIKWDNNLYYLNLWKQGNTGYPIIDAGMRQLKQLGWISNRLRMITASFL 356
Query 361 SKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQSQKFDPE 420
KNLLIDWRKGE++FM LIDGD A+N+G WQW AS GTD+ PYFRIFNP+ QS+KFD
Sbjct 357 VKNLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGTDSMPYFRIFNPMLQSKKFDIN 416
Query 421 GVFLKKWIPELKHLDSKHIHDPYAYQ--HKTELNYPKPIIDLKATRKNAIEVFK 472
F++K+IPEL ++ + +IH+P +K YP+PII+ ++K + VFK
Sbjct 417 AKFIRKYIPELSNVSTYNIHNPCDNNKTNKIHSKYPQPIINYYHSKKKTLLVFK 470
>P27526 Deoxyribodipyrimidine photo-lyase [Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987)]
Length=615
Score = 328 bits (842), Expect = 1e-109
Identities = 177/498 (36%), Positives = 284/498 (57%), Gaps = 31/498 (6%)
Query 6 WFRNDLRLNDHAALWHATQAGST-----IAFVALSPLQWQQHDDAIIKIDFYMRQLTQLK 60
WF+ DLRL+D+ +LW A+Q I LSP + H A I++DF +R L LK
Sbjct 113 WFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEVLK 172
Query 61 QELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSK 120
+L + IPL V+ + K++ T+I + + ++ +E ++E+ R+ + + L++
Sbjct 173 TDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVDELRREAKLVKLLAE 232
Query 121 IGKN----LILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQK 176
K + HD + G++++ S Y V++P+ + + + + P+C K
Sbjct 233 GEKGEKMAADVVHDTCVVMPGALQSGSGGQYAVYSPWFRAWIKHIE-ENPECLEIYEKPG 291
Query 177 QQPEIAKKE------AAIPSLKQLGYSQIDQHIQNE--WPIGETFALNLLEDFTQDKINR 228
P K++ +IP + + D+ + WP GE AL LE F + I +
Sbjct 292 PNPPGTKEKHENLFACSIPEAPEGKRLRDDEKARYHSLWPAGEHEALKRLEKFCDEAIGK 351
Query 229 YHESRDYPAQDGTSHISAYLTIGILSIRQCIQAIFQKQHGQFFLN-NKGQEIWLNELLWR 287
Y E R+ PA GTS++S + G LS R I+ + + + N+G + W++E+ WR
Sbjct 352 YAERRNIPAMQGTSNLSVHFASGTLSARTAIRTARDRNNTKKLNGGNEGIQRWISEVAWR 411
Query 288 EFYQQLLFDFPKLSRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGW 347
+FY+ +L +P + ++PF+ NI W+ N +HF AW QG+TG PI+DA MRQ+ +TG+
Sbjct 412 DFYKHVLVHWPYVCMNKPFKPTYSNIEWSYNVDHFHAWTQGRTGFPIIDAAMRQVLSTGY 471
Query 348 MHNRVRMICAMFLSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRI 407
MHNR+RMI A FL+K+LL+DWR GE++FM+HLIDGD A+N+GGW ++AS G D PYFR+
Sbjct 472 MHNRLRMIVASFLAKDLLVDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFRV 531
Query 408 FNPVTQSQKFDPEGVFLKKWI------PELKHLDSKHIHDPY------AYQHKTELNYPK 455
FNP+ QS+KFDP+G +++KW+ PELK IHDPY + E YP+
Sbjct 532 FNPLLQSEKFDPDGDYIRKWVEELRDLPELKGGKGGEIHDPYGRGSEKVKKKLEEKGYPR 591
Query 456 PIIDLKATRKNAIEVFKK 473
PI++ R A++ +K+
Sbjct 592 PIVEHSGARDRALDAYKR 609
>Q55081 Deoxyribodipyrimidine photo-lyase [Synechocystis sp. (strain
PCC 6803 / Kazusa)]
Length=488
Score = 284 bits (727), Expect = 5e-94
Identities = 178/469 (38%), Positives = 253/469 (54%), Gaps = 29/469 (6%)
Query 4 LIWFRNDLRLNDHAALWHATQAGSTIAFV-ALSPLQWQQHDDAIIKIDFYMRQLTQLKQE 62
L+W R DLRLNDH AL A Q + I V L Q D A ++ + + L L+
Sbjct 20 LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAEDMAPARVAYLLGCLQSLQDH 79
Query 63 LNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSKIG 122
+ L+V D + +++ V ++T +RD AV +AL + G
Sbjct 80 YQRLGSELLV----FQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERG 135
Query 123 KNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPH-KQKQQPEI 181
+ D+ + G + ++ +PY V+TPF K + +PK P P K Q
Sbjct 136 LAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQ-----LPKTSPVPTPKDLQGLTP 190
Query 182 AKKEA-------AIPSLKQLGYSQIDQHIQNEWPI--GETFALNLLEDFTQDKINRYHES 232
A+KE AIP L LG+ DQ + P+ GE A L+ F + Y ++
Sbjct 191 AEKEKLAPLEPLAIPQLADLGFIW-DQPL----PLTPGEEAAEQRLDWFVAHGLEEYQQN 245
Query 233 RDYPAQDGTSHISAYLTIGILSIRQCIQAIFQK-QHGQFFLNNKGQEIWLNELLWREFYQ 291
R++PA DGTS +SA L G++S R Q + + + E W EL WREFYQ
Sbjct 246 RNFPALDGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFYQ 305
Query 292 QLLFDFPKLSRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNR 351
L+ FP L++ P++ + PW EN +HF+AW +G+TG PI+DA M QL TGWMHNR
Sbjct 306 HCLYSFPALAQG-PYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNR 364
Query 352 VRMICAMFLSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPV 411
RMI A FL K+L+++W+ GE +FMQ L DGDLAAN+GGWQWSAS+G D P RIFNP
Sbjct 365 CRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPH 423
Query 412 TQSQKFDPEGVFLKKWIPELKHLDSKH-IHDPYAYQHKTELNYPKPIID 459
TQ+QKFDPEG +++ W+P+L D+ + + +NYP+PI+D
Sbjct 424 TQAQKFDPEGEYIRTWLPQLARFDTGDLLTGKLTPGSRRSVNYPEPIVD 472
>Q04449 Deoxyribodipyrimidine photo-lyase [Alkalihalophilus pseudofirmus
(strain ATCC BAA-2126 / JCM 17055 / OF4)]
Length=479
Score = 283 bits (724), Expect = 1e-93
Identities = 168/491 (34%), Positives = 260/491 (53%), Gaps = 49/491 (10%)
Query 5 IWFRNDLRLNDHAALWHATQA-----GSTIAFVALSPLQWQQHDDAIIKIDFYMRQLTQL 59
+WFR D RL+DH AL HA +A G +AF L P + D++ + + Q
Sbjct 10 VWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDPKTASVEP---VHHDYFFQTVMQF 66
Query 60 KQELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALS 119
KQ L T L + + ++ + + + I VYAN + + RD A + L+
Sbjct 67 KQMLKTNGGDLYIITGTIEGALSKLLQAFPE---IDAVYANDDRVGDGRLRDEAAEHFLA 123
Query 120 KIGKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQP 179
K F D L + K PY+VFTP+ K + ++K+ P
Sbjct 124 KQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKA--------------WAKERKRTP 169
Query 180 EIAKKEAAIPSLK---------QLGYSQIDQHIQNEWP-IGETFALNLLEDFTQDKINRY 229
+ K++ + S+ + ++ + + +W IGE A+ L+ FT+ +++ Y
Sbjct 170 AVIKRDVLLGSVHKGTAPDREAETLFNNLIKKCSYDWSAIGEEHAIKRLQMFTKKRLSGY 229
Query 230 HESRDYPAQDGTSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEIWLNELLWREF 289
+RD+P+ GTS +S Y+ G +S R I + + E +L EL WR+F
Sbjct 230 KANRDFPSITGTSRLSPYIKTGAVSSRSIYYHILNAEADSY-----SAETFLKELAWRDF 284
Query 290 YQQLLFDFPKLSRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMH 349
Y+ + F P + + + + + W+ + + +W +G+TG PIVDAGMRQL GWMH
Sbjct 285 YRMVHFYEPDCKDREIMEGY-RELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMH 343
Query 350 NRVRMICAMFLSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFN 409
NR+RMI A FL+K+LLIDWR GE++F + LID D ++N GGWQW+AS GTDA PYFRIFN
Sbjct 344 NRLRMITASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFN 403
Query 410 PVTQSQKFDPEGVFLKKWIPELKHLDSKHIHDPY--------AYQHKTELNYPKPIIDLK 461
PVTQS++FD G +++ +IPEL H+ +IH+P+ Y+ + + +YP PI+D
Sbjct 404 PVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDHS 463
Query 462 ATRKNAIEVFK 472
RK A+ FK
Sbjct 464 KQRKKALSFFK 474
>P05066 Deoxyribodipyrimidine photo-lyase, mitochondrial [Saccharomyces
cerevisiae (strain ATCC 204508 / S288c)]
Length=565
Score = 277 bits (709), Expect = 2e-90
Identities = 176/516 (34%), Positives = 264/516 (51%), Gaps = 82/516 (16%)
Query 6 WFRNDLRLNDHAALWHATQAGSTI----------AFVALSPLQWQQHDDAIIKIDFYMRQ 55
WFRNDLRL D+ L+ + + A ++ W+ H D+ K+ F M
Sbjct 80 WFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLMFIMGA 139
Query 56 LTQLKQELNTINIPLIV--------------QIIPLWKDIATE-------IISISDRYHI 94
L L+Q L ++IPL++ + + +K+ II+ + Y
Sbjct 140 LKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITANIEYQT 199
Query 95 QDVYANIETGINEIERDHAVQEALSKIGKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFK 154
++Y +I NE DH +Q L +HD + G I Y VFTP+
Sbjct 200 DELYRDIRLLENE---DHRLQ---------LKYYHDSCIVAPGLITTDRGTNYSVFTPWY 247
Query 155 KTCYERLNIDIPKCFPYPHKQKQQPEIAKKEAAIP-------SLKQLGYSQIDQHIQ--- 204
K +N + +K EI P LK YS D+ +Q
Sbjct 248 KKWVLYVN----------NYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIP 297
Query 205 -NEW---PIGETFALNLLEDFTQDKINRYHESRDYPAQDGTSHISAYLTIGILSIRQCIQ 260
++W + E AL+ L+DF K ++Y+ +D GTS +S Y+T G +S R +
Sbjct 298 KSKWCLPDVSEEAALSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVN 357
Query 261 AIFQKQHGQFFL----NNKGQEIWLNELLWREFYQQLLFDFPKLSRHQPFQDHTKNIPWN 316
FQ +GQ +N + ++ E+ WR+FY+ + ++P S P++ T +I W
Sbjct 358 QAFQSCNGQIMSKALKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWE 417
Query 317 ENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRMICAMFLSKNLLIDWRKGEKWFM 376
N FE W G TGIPIVDA MR+L TG+++NR RMI A FLSKNLLIDWR GE+WFM
Sbjct 418 NNPVAFEKWCTGNTGIPIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFM 477
Query 377 QHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQSQKFDPEGVFLKKWIPELKHLDS 436
+HLIDGD ++N GGW + +STG DA PYFR+FN Q++K+DP+ +F+K+W+PEL
Sbjct 478 KHLIDGDSSSNVGGWGFCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL----- 532
Query 437 KHIHDPYAYQHKTELNYPKPIIDLKATRKNAIEVFK 472
+ ++K NYPKP++DLK +R+ A++V+K
Sbjct 533 ------ISSENKRPENYPKPLVDLKHSRERALKVYK 562
Score = 18.9 bits (37), Expect = 5.0
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 0/27 (0%)
Query 440 HDPYAYQHKTELNYPKPIIDLKATRKN 466
HD Y + YP+PI A + N
Sbjct 23 HDFEQYHSLNKKYYPRPITRTGANQFN 49
>P05327 Deoxyribodipyrimidine photo-lyase [Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1)]
Length=484
Score = 263 bits (671), Expect = 9e-86
Identities = 173/475 (36%), Positives = 240/475 (51%), Gaps = 31/475 (7%)
Query 4 LIWFRNDLRLNDHAALWHA-TQAGSTIAFVALSPLQWQQHDDAIIKIDFYMRQLTQLKQE 62
L W R DLRL+D+ L A Q+ I L P Q D A ++ + L +L+Q
Sbjct 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 65
Query 63 LNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSKIG 122
L++ L D I ++ + + VY N + +RD V AL G
Sbjct 66 YQQAGSRLLL----LQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAG 121
Query 123 KNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQPEIA 182
+ D+ L I + S PY V+ PF K + PK P +
Sbjct 122 IRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQ-----PKPTPVATPTELVDLSP 176
Query 183 KKEAAI--------PSLKQLGYSQIDQHIQNEWPI--GETFALNLLEDFTQDKINRYHES 232
++ AI P+LKQLG+ +P+ GET A+ L++F I Y
Sbjct 177 EQLTAIAPLLLSELPTLKQLGFDW-----DGGFPVEPGETAAIARLQEFCDRAIADYDPQ 231
Query 233 RDYPAQDGTSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEI--WLNELLWREFY 290
R++PA+ GTS +S L G + IRQ +A H + I W EL WREFY
Sbjct 232 RNFPAEAGTSGLSPALKFGAIGIRQAWRAA-SAAHALSRSDEARNSIRVWQQELAWREFY 290
Query 291 QQLLFDFPKLSRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHN 350
Q L+ FP L+ P++ + PW + F AW Q +TG PIVDA MRQL TGWMHN
Sbjct 291 QHALYHFPSLA-DGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHN 349
Query 351 RVRMICAMFLSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNP 410
R MI A FL+K+L+IDWR+GE++FMQHL+DGDLAAN+GGWQWSAS+G D P RIFNP
Sbjct 350 RCWMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNP 408
Query 411 VTQSQKFDPEGVFLKKWIPELKHLDSKHIHDPYAYQHKTELNYPKPIIDLKATRK 465
+Q++KFD ++K+W+PEL+H+ K + YP PI++ +K
Sbjct 409 ASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIGRR-GYPAPIVNHNLRQK 462
>A9CJC9 Deoxyribodipyrimidine photo-lyase [Agrobacterium fabrum
(strain C58 / ATCC 33970)]
Length=479
Score = 250 bits (638), Expect = 6e-81
Identities = 168/486 (35%), Positives = 243/486 (50%), Gaps = 40/486 (8%)
Query 4 LIWFRNDLRLNDHAALWHATQAGSTIAFVAL-----SPL----QWQQHDDAIIKIDFYMR 54
++WFR DLRL+D+ AL A + G + V + PL +W H
Sbjct 9 IVWFRKDLRLSDNLALLAAVEHGGPVIPVYIREKSAGPLGGAQEWWLH-----------H 57
Query 55 QLTQLKQELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAV 114
L L L L++ + I ++IS + V N + D A+
Sbjct 58 SLAALSSSLEKAGGRLVLASGDAER-ILRDLISETGA---DTVVWNRRYDPTGMATDKAL 113
Query 115 QEALSKIGKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHK 174
++ L G + F + L ++ KS PY+V+TPF + D P P K
Sbjct 114 KQKLRDDGLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRALE---GSDEPHAPADPPK 170
Query 175 QKQQPEIAKKEAAIPSLKQLGYS-QIDQHIQNEWPIGETFALNLLEDFTQDKINRYHESR 233
P++ K + + K L + + W GET AL+ L+DF + Y E R
Sbjct 171 SLTAPKVWPKSEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALKGYEEGR 230
Query 234 DYPAQDGTSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEIWLNELLWREFYQQL 293
D+PA+ TS +S +L G +S A K + +N + E++WREF L
Sbjct 231 DFPAKPATSLLSPHLAAGEISPAAVWHAT--KGLSRHIASNDISR-FRKEIVWREFCYHL 287
Query 294 LFDFPKLSRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVR 353
LF FP+L + D W ++++ F+AW +G TG PIVDAGMRQL G MHNRVR
Sbjct 288 LFHFPELGEKN-WNDSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHNRVR 346
Query 354 MICAMFLSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQ 413
MI A FL K+LLIDWRKGEKWF L+D D A+N WQW A +G DASP+FRIFNP+ Q
Sbjct 347 MIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQ 406
Query 414 SQKFDPEGVFLKKWIPELKHLDSKHIHDPY------AYQHKTEL--NYPKPIIDLKATRK 465
+KFD +G ++++++PEL+ L+ K+IH P+ + EL YP PI+D R+
Sbjct 407 GEKFDGDGDYVRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVDHGKARE 466
Query 466 NAIEVF 471
A+ +
Sbjct 467 RALAAY 472
>Q9HQ46 Deoxyribodipyrimidine photo-lyase [Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1)]
Length=481
Score = 249 bits (636), Expect = 1e-80
Identities = 160/487 (33%), Positives = 254/487 (52%), Gaps = 26/487 (5%)
Query 3 QLIWFRNDLRLNDHAALWHATQAGSTI---------AFVALSPLQWQQHDDAIIKIDFYM 53
QL W R DLR D+ L A + + A V + H A ++ F +
Sbjct 2 QLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHA-APPRVAFML 60
Query 54 RQLTQLKQELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHA 113
L L++ + LIV+ D A + ++++ V N + +RD
Sbjct 61 DALAALRERYRDLGSDLIVR----HGDPAAVLPAVANDLDATRVVWNHDYSGLATDRDAG 116
Query 114 VQEALSKIGKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPH 173
V++AL G FHD G IR + PY V+T F + +R + P P P
Sbjct 117 VRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREK-NPPAPEPEPA 175
Query 174 KQKQQPEIAKKEAAIPSLKQLGYSQIDQHIQNEWPIGETFALNLLEDFTQD-KINRYHES 232
+A + +PS+++LG+++ + + + G A +LL+ F + I RY +
Sbjct 176 DLAADTALADT-SPLPSVQELGFAEPEAAVPDA---GTAAARSLLDAFRESGDIYRYEDR 231
Query 233 RDYPAQDGTSHISAYLTIGILSIRQCIQAI-FQKQHGQFFLNNKGQEIWLNELLWREFYQ 291
RDYP ++ TS +S +L G + IR +A K + ++ +L WREFY
Sbjct 232 RDYPHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYA 291
Query 292 QLLFDFPKLSRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNR 351
Q+L+ F + + F+ + I W ++ +AW G+TG PIVDAGMRQL+A +MHNR
Sbjct 292 QVLY-FNQNVVSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNR 350
Query 352 VRMICAMFLSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPV 411
VRMI A FL+K+LL+DWR G WF + L D D A ++GGWQW+ASTGTDA PYFR+FNP+
Sbjct 351 VRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPM 410
Query 412 TQSQKFDPEGVFLKKWIPELKHLDSKHIHD----PYAYQHKTELNYPKPIIDLKATRKNA 467
TQ +++DP+ ++ +++PEL+ + + IH + + + YP PI+D R++A
Sbjct 411 TQGERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQRREDA 470
Query 468 IEVFKKS 474
I +F+++
Sbjct 471 IAMFERA 477
Lambda K H a alpha
0.323 0.138 0.436 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2286158
Database: 24ce46aceeb64422f517950a081c2d3d.SwissProt.fasta
Posted date: May 23, 2024 1:15 PM
Number of letters in database: 5,966
Number of sequences in database: 12
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
