BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 79713babfc0a865b45c715c47e11d0d2.SwissProt.fasta
           1 sequences; 245 total letters



Query= ACIAD1247

Length=129
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q05594 Cobalt transport protein CbiM [Salmonella typhimurium (str...  32.3    1e-06


>Q05594 Cobalt transport protein CbiM [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=245

 Score = 32.3 bits (72),  Expect = 1e-06
 Identities = 27/103 (26%), Positives = 44/103 (43%), Gaps = 22/103 (21%)

Query  5    IFLISACMLALGGCATTASVNENTTANTTQQLGMTALKIAVNAECINKINSIPAWQVASK  64
            + L  A +LA GG  T               LG   + +AV    I  +     W++A +
Sbjct  122  VLLFQALLLAHGGLTT---------------LGANGMSMAV----IGPVVGYLVWKMACR  162

Query  65   LMTENQRQNTQTEICGCVSEKAPYSVTAVDLATATFDPNARAS  107
                  R++    +C  +++ A Y VT+V L  A  DP+A A+
Sbjct  163  A---GLRRDVAVFLCAMLADLATYFVTSVQLGVAFPDPHAGAT  202



Lambda      K        H        a         alpha
   0.319    0.124    0.356    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 24860


  Database: 79713babfc0a865b45c715c47e11d0d2.SwissProt.fasta
    Posted date:  May 20, 2024  10:51 PM
  Number of letters in database: 245
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40