BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 20bf10f535a235c0d1a9f66c7ebcf044.SwissProt.fasta
           11 sequences; 1,269 total letters



Query= ACIAD1865

Length=103
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q8UAA8 Biofilm growth-associated repressor [Agrobacterium fabrum ...  85.5    5e-27
Q87AD5 Biofilm growth-associated repressor [Xylella fastidiosa (s...  80.9    3e-25
Q9PFB1 Biofilm growth-associated repressor [Xylella fastidiosa (s...  80.9    3e-25
P52695 Transcriptional activator HlyU [Vibrio cholerae serotype O...  70.5    3e-21
P28267 Nodulation protein NolR [Rhizobium meliloti]                   63.9    2e-18
P77295 Probable HTH-type transcriptional regulator YgaV [Escheric...  62.0    5e-18
O31844 HTH-type transcriptional repressor CzrA [Bacillus subtilis...  55.8    2e-15
O53838 HTH-type transcriptional regulator KmtR [Mycobacterium tub...  55.8    3e-15
P30338 Arsenical resistance operon repressor [Staphylococcus aureus]  45.1    2e-11


>Q8UAA8 Biofilm growth-associated repressor [Agrobacterium fabrum 
(strain C58 / ATCC 33970)]
Length=117

 Score = 85.5 bits (210),  Expect = 5e-27
 Identities = 40/97 (41%), Positives = 66/97 (68%), Gaps = 0/97 (0%)

Query  4    ELEIDLIRQSADAVVTILKSLANTDRLLILCYLAKQELNVSQIEEKTNITQPTLSQQLMM  63
            E+ +  + + A  V  +LK+LA+  RL++ C LA+ E +V ++E K +I QPTLSQQL +
Sbjct  15   EIPLPAMEKRATEVAILLKTLAHPARLMLACTLAQGEFSVGELEAKLDIRQPTLSQQLGV  74

Query  64   LRKSDVVHTRRDGKQIFYSIKDEKLIIVLSTLYELYC  100
            LR++ +V TRR+ KQIFY + ++K   ++  LY ++C
Sbjct  75   LREAGIVDTRREAKQIFYRLAEDKAARLIEALYAIFC  111


>Q87AD5 Biofilm growth-associated repressor [Xylella fastidiosa 
(strain Temecula1 / ATCC 700964)]
Length=114

 Score = 80.9 bits (198),  Expect = 3e-25
 Identities = 38/93 (41%), Positives = 65/93 (70%), Gaps = 0/93 (0%)

Query  10   IRQSADAVVTILKSLANTDRLLILCYLAKQELNVSQIEEKTNITQPTLSQQLMMLRKSDV  69
            + + A+ V  +LK+L++  RL+++C L + E +V ++E++  I QPTLSQQL +LR+S +
Sbjct  18   MEKRANEVANLLKTLSHPVRLMLVCTLVEGEFSVGELEQQIGIGQPTLSQQLGVLRESGI  77

Query  70   VHTRRDGKQIFYSIKDEKLIIVLSTLYELYCPQ  102
            V TRR+ KQIFY + + K   +++ LY ++C Q
Sbjct  78   VETRRNIKQIFYRLTEAKAAQLVNALYTIFCTQ  110


>Q9PFB1 Biofilm growth-associated repressor [Xylella fastidiosa 
(strain 9a5c)]
Length=114

 Score = 80.9 bits (198),  Expect = 3e-25
 Identities = 38/93 (41%), Positives = 65/93 (70%), Gaps = 0/93 (0%)

Query  10   IRQSADAVVTILKSLANTDRLLILCYLAKQELNVSQIEEKTNITQPTLSQQLMMLRKSDV  69
            + + A+ V  +LK+L++  RL+++C L + E +V ++E++  I QPTLSQQL +LR+S +
Sbjct  18   MEKRANEVANLLKTLSHPVRLMLVCTLVEGEFSVGELEQQIGIGQPTLSQQLGVLRESGI  77

Query  70   VHTRRDGKQIFYSIKDEKLIIVLSTLYELYCPQ  102
            V TRR+ KQIFY + + K   +++ LY ++C Q
Sbjct  78   VETRRNIKQIFYRLTEAKAAQLVNALYTIFCAQ  110


>P52695 Transcriptional activator HlyU [Vibrio cholerae serotype 
O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=108

 Score = 70.5 bits (171),  Expect = 3e-21
 Identities = 34/93 (37%), Positives = 60/93 (65%), Gaps = 1/93 (1%)

Query  8    DLIRQSADAVVTILKSLANTDRLLILCYLAKQELNVSQIEEKTNITQPTLSQQLMMLRKS  67
            ++ + SA AVV +LK++AN  RL ILC L   EL+V ++  +  ++Q  LSQ L  LR+ 
Sbjct  13   EMEKNSAKAVV-LLKAMANERRLQILCMLLDNELSVGELSSRLELSQSALSQHLAWLRRD  71

Query  68   DVVHTRRDGKQIFYSIKDEKLIIVLSTLYELYC  100
             +V+TR++ + +FY++   ++  ++  L+ LYC
Sbjct  72   GLVNTRKEAQTVFYTLSSTEVKAMIELLHRLYC  104


>P28267 Nodulation protein NolR [Rhizobium meliloti]
Length=122

 Score = 63.9 bits (154),  Expect = 2e-18
 Identities = 32/88 (36%), Positives = 51/88 (58%), Gaps = 0/88 (0%)

Query  12   QSADAVVTILKSLANTDRLLILCYLAKQELNVSQIEEKTNITQPTLSQQLMMLRKSDVVH  71
            + A+     L ++AN  RLLIL  L K+E+ V  +  K  ++Q  LSQ L  LR  ++V 
Sbjct  18   EDAEIAAGFLSAMANPKRLLILDSLVKEEMAVGALAHKVGLSQSALSQHLSKLRAQNLVS  77

Query  72   TRRDGKQIFYSIKDEKLIIVLSTLYELY  99
            TRRD + I+YS   + ++ +L  L ++Y
Sbjct  78   TRRDAQTIYYSSSSDAVLKILGALSDIY  105


>P77295 Probable HTH-type transcriptional regulator YgaV [Escherichia 
coli (strain K12)]
Length=99

 Score = 62.0 bits (149),  Expect = 5e-18
 Identities = 30/97 (31%), Positives = 58/97 (60%), Gaps = 1/97 (1%)

Query  6    EIDLIRQSADAVVTILKSLANTDRLLILCYLAKQE-LNVSQIEEKTNITQPTLSQQLMML  64
            E+  ++ SA+    +LK++++  RLLILC L+     +  ++   T ++    SQ L  +
Sbjct  3    ELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARM  62

Query  65   RKSDVVHTRRDGKQIFYSIKDEKLIIVLSTLYELYCP  101
            R   ++ ++RD ++I YSIK+E +  +++TL  +YCP
Sbjct  63   RDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP  99


>O31844 HTH-type transcriptional repressor CzrA [Bacillus subtilis 
(strain 168)]
Length=107

 Score = 55.8 bits (133),  Expect = 2e-15
 Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 0/88 (0%)

Query  8   DLIRQSADAVVTILKSLANTDRLLILCYLAKQELNVSQIEEKTNITQPTLSQQLMMLRKS  67
           DL  ++   V    K+L++  R+ IL  L++ E  V+ I EK N+ Q T+S QL  L+  
Sbjct  13  DLDEETLFLVAQTFKALSDPTRIRILHLLSQGEHAVNGIAEKLNLLQSTVSHQLRFLKNL  72

Query  68  DVVHTRRDGKQIFYSIKDEKLIIVLSTL  95
            +V +RR+G  I+YS +DE ++ VL  +
Sbjct  73  RLVKSRREGTSIYYSPEDEHVLDVLQQM  100


>O53838 HTH-type transcriptional regulator KmtR [Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=130

 Score = 55.8 bits (133),  Expect = 3e-15
 Identities = 27/70 (39%), Positives = 46/70 (66%), Gaps = 0/70 (0%)

Query  17  VVTILKSLANTDRLLILCYLAKQELNVSQIEEKTNITQPTLSQQLMMLRKSDVVHTRRDG  76
           VV + + LA+  R+ +L  LA +E++V+++ E+     P++SQ L  LR + +V TRRDG
Sbjct  18  VVEVFRMLADATRVQVLWSLADREMSVNELAEQVGKPAPSVSQHLAKLRMARLVRTRRDG  77

Query  77  KQIFYSIKDE  86
             IFY +++E
Sbjct  78  TTIFYRLENE  87


>P30338 Arsenical resistance operon repressor [Staphylococcus 
aureus]
Length=104

 Score = 45.1 bits (105),  Expect = 2e-11
 Identities = 27/77 (35%), Positives = 43/77 (56%), Gaps = 0/77 (0%)

Query  19  TILKSLANTDRLLILCYLAKQELNVSQIEEKTNITQPTLSQQLMMLRKSDVVHTRRDGKQ  78
           TILK L+++ RL IL  L+  EL    + E    +QPTLS  +  L  +++V TR+DG +
Sbjct  8   TILKILSDSSRLEILDLLSCGELCACDLLEHFQFSQPTLSHHMKSLVDNELVTTRKDGNK  67

Query  79  IFYSIKDEKLIIVLSTL  95
            +Y +    L  ++  L
Sbjct  68  HWYQLNHAILDDIIQNL  84



Lambda      K        H        a         alpha
   0.326    0.138    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 73872


  Database: 20bf10f535a235c0d1a9f66c7ebcf044.SwissProt.fasta
    Posted date:  May 20, 2024  9:03 PM
  Number of letters in database: 1,269
  Number of sequences in database:  11



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40