BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 65e2a1f143625731e6dfa7835ad24aec.SwissProt.fasta
           1 sequences; 444 total letters



Query= ACIAD2113

Length=190
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

O25656 Zinc protease PqqE [Helicobacter pylori (strain ATCC 70039...  33.5    2e-06


>O25656 Zinc protease PqqE [Helicobacter pylori (strain ATCC 700392 
/ 26695)]
Length=444

 Score = 33.5 bits (75),  Expect = 2e-06
 Identities = 21/49 (43%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query  72   ADEEKALESSTKIYALFLDYLENNDFIG-ADMARKFLQMGYTRARRYAN  119
            AD    LESS+ +  LF DYL  ND  G  D  R+FL +  +   R AN
Sbjct  381  ADFISNLESSSDVAGLFADYLVQNDIQGLTDYQRQFLDLKVSDLVRVAN  429


 Score = 15.8 bits (29),  Expect = 1.2
 Identities = 18/67 (27%), Positives = 27/67 (40%), Gaps = 10/67 (15%)

Query  15   KVPKRLSRVH--SNSFD---YSLDFKEIDFRKKPELYRIGKGEQGVLLVEPYKSEILPFW  69
            K+ KR   V   S SFD   Y +   + +  K  EL+    G   +      + E LP  
Sbjct  98   KIVKRFGGVSNASTSFDITRYFIKTSQANLDKSLELFAETMGSLNLK-----EDEFLPER  152

Query  70   RFADEEK  76
            +   EE+
Sbjct  153  QVVAEER  159


 Score = 14.6 bits (26),  Expect = 2.8
 Identities = 21/112 (19%), Positives = 48/112 (43%), Gaps = 14/112 (13%)

Query  3    KSMTSKIVENDKKVPKRLSRVHSNSFDY---SLDFKEIDFRKKPELYR------IGKGEQ  53
            K++ +  ++  K+   R + VH +       +L +K   F+ K ++        +G+G+ 
Sbjct  247  KAIPTPYMKEPKQDGARTAVVHKDGVHLEWVALGYKVPAFKHKDQVALDALSRLLGEGKS  306

Query  54   GVLLVEPYKSEILPFWRFADEEKALESSTKIYALFLDYLENNDFIGADMARK  105
              L     +SE++   R A +  +     +  ++FL     N  + A+  +K
Sbjct  307  SWL-----QSELVDKKRLASQAFSHNMQLQDESVFLFIAGGNPNVKAEALQK  353



Lambda      K        H        a         alpha
   0.318    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 68552


  Database: 65e2a1f143625731e6dfa7835ad24aec.SwissProt.fasta
    Posted date:  May 20, 2024  8:25 PM
  Number of letters in database: 444
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40