BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 0cc661bbbb732ace390c14bf538b7248.SwissProt.fasta
6 sequences; 1,047 total letters
Query= ACIAD2139
Length=138
Score E
Sequences producing significant alignments: (Bits) Value
G8Q5R9 Transcription factor AmrZ [Pseudomonas ogarae (strain DSM ... 39.3 7e-09
G3XCY4 Transcription factor AmrZ [Pseudomonas aeruginosa (strain ... 37.7 3e-08
P03050 Transcriptional repressor arc [Salmonella phage P22] 36.2 3e-08
P03049 Regulatory protein mnt [Salmonella phage P22] 35.0 2e-07
Q59PE4 RVS161-like protein RVS162 [Candida albicans (strain SC531... 32.7 4e-06
Q92MK5 Peptide chain release factor 1 [Rhizobium meliloti (strain... 32.7 4e-06
>G8Q5R9 Transcription factor AmrZ [Pseudomonas ogarae (strain
DSM 112162 / CECT 30235 / F113)]
Length=108
Score = 39.3 bits (90), Expect = 7e-09
Identities = 18/41 (44%), Positives = 29/41 (71%), Gaps = 0/41 (0%)
Query 2 SREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEES 42
SR + VRLP ++++I E A N RS+N++++ARLE+S
Sbjct 11 SRTADKFVVRLPDGMRERIAEVARNHHRSMNSEIIARLEQS 51
>G3XCY4 Transcription factor AmrZ [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228
/ 1C / PRS 101 / PAO1)]
Length=108
Score = 37.7 bits (86), Expect = 3e-08
Identities = 17/41 (41%), Positives = 30/41 (73%), Gaps = 0/41 (0%)
Query 2 SREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEES 42
SR + VRLP+ ++++I E A + RS+N++++ARLE+S
Sbjct 13 SRTADKFVVRLPEGMREQIAEVARSHHRSMNSEIIARLEQS 53
>P03050 Transcriptional repressor arc [Salmonella phage P22]
Length=53
Score = 36.2 bits (82), Expect = 3e-08
Identities = 15/39 (38%), Positives = 26/39 (67%), Gaps = 0/39 (0%)
Query 6 PQLKVRLPQELKDKITESASNLGRSINADVVARLEESFQ 44
PQ +R P+E+ D + + A GRS+N+++ R+ ESF+
Sbjct 8 PQFNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFK 46
>P03049 Regulatory protein mnt [Salmonella phage P22]
Length=83
Score = 35.0 bits (79), Expect = 2e-07
Identities = 13/42 (31%), Positives = 29/42 (69%), Gaps = 0/42 (0%)
Query 1 MSREDPQLKVRLPQELKDKITESASNLGRSINADVVARLEES 42
M+R+DP R+P E+++K+ A GRS+N++++ ++++
Sbjct 1 MARDDPHFNFRMPMEVREKLKFRAEANGRSMNSELLQIVQDA 42
>Q59PE4 RVS161-like protein RVS162 [Candida albicans (strain SC5314
/ ATCC MYA-2876)]
Length=335
Score = 32.7 bits (73), Expect = 4e-06
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (9%)
Query 69 YHAAIMDLGN---AFQKEPFPD-LLHEQTRYKILFNEINKLIKSLEEKLLPFDSADNKDA 124
Y+A I L + A + P+ +L+ R+ + EIN++IK KLL +D+ NK
Sbjct 147 YYATIKQLNDSCIANLENPYNQTVLNPIARFNSYYIEINEIIKKRHNKLLDYDAMKNK-- 204
Query 125 ILELLNNP 132
+ +L+ NP
Sbjct 205 LRKLIENP 212
Score = 13.9 bits (24), Expect = 8.0
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query 73 IMDLGNAFQKEPFPDLLHEQTRYKILFNEIN-----KLIKSLEEKLLPFD 117
I++L + +E E T + + EIN +L K + ++ FD
Sbjct 224 IIELNHNQYEEKLKIYNQELTEVESKYVEINNQLLIELPKLINHRISYFD 273
>Q92MK5 Peptide chain release factor 1 [Rhizobium meliloti (strain
1021)]
Length=360
Score = 32.7 bits (73), Expect = 4e-06
Identities = 33/126 (26%), Positives = 59/126 (47%), Gaps = 16/126 (13%)
Query 7 QLKVRLPQELKDKITESASNLGRSINADVVARLEESFQSFTSNKIDFAHGYLIAFLRAQA 66
+L V +EL+ + E + + +ADV +L + +++ + A+ +A A
Sbjct 3 KLPVEKMRELERRFGEIEARMSAGPSADVYVKLASEY-----SELQPVVSKIRAYEKATA 57
Query 67 AIYHAAIMDLGNAFQKEPFPDLLHEQTRYKILFNEINKLIKSLEEK----LLPFDSADNK 122
+ A M A K+ DL + E+ + I++LE++ LLP D+AD K
Sbjct 58 ELADIAAMLADRATDKD-MRDLAEMEKP------EVEEKIEALEQEIQILLLPKDAADEK 110
Query 123 DAILEL 128
AILE+
Sbjct 111 SAILEI 116
Lambda K H a alpha
0.321 0.137 0.378 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 96690
Database: 0cc661bbbb732ace390c14bf538b7248.SwissProt.fasta
Posted date: May 20, 2024 8:22 PM
Number of letters in database: 1,047
Number of sequences in database: 6
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
